Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20138 and SM_b20139 are separated by 311 nucleotides SM_b20139 and SM_b20140 are separated by 19 nucleotides SM_b20140 and SM_b20141 overlap by 1 nucleotides
SM_b20138: SM_b20138 - hypothetical protein, at 152,176 to 153,102
_b20138
SM_b20139: SM_b20139 - hypothetical protein, at 153,414 to 153,908
_b20139
SM_b20140: SM_b20140 - dihydrodipicolinate synthase, at 153,928 to 154,809
_b20140
SM_b20141: SM_b20141 - oligopeptide ABC transporter ATP-binding protein, at 154,809 to 156,455
_b20141
Position (kb) 153
154
155 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 152.990 kb on + strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.993 kb on + strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 153.087 kb on + strand at 153.258 kb on + strand at 153.268 kb on + strand at 153.268 kb on + strand at 153.271 kb on + strand at 153.272 kb on - strand at 153.290 kb on + strand at 153.290 kb on + strand at 153.291 kb on - strand at 153.587 kb on + strand, within SM_b20139 at 153.588 kb on - strand, within SM_b20139 at 153.588 kb on - strand, within SM_b20139 at 153.588 kb on - strand, within SM_b20139 at 153.698 kb on + strand, within SM_b20139 at 153.887 kb on + strand at 154.100 kb on + strand, within SM_b20140 at 154.101 kb on - strand, within SM_b20140 at 154.256 kb on + strand, within SM_b20140 at 154.296 kb on - strand, within SM_b20140 at 154.344 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.416 kb on - strand, within SM_b20140 at 154.421 kb on + strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.698 kb on + strand, within SM_b20140 at 154.698 kb on + strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.749 kb on - strand at 154.863 kb on + strand at 154.864 kb on - strand at 154.922 kb on + strand at 154.923 kb on - strand at 154.925 kb on - strand at 154.940 kb on + strand at 155.002 kb on + strand, within SM_b20141 at 155.341 kb on + strand, within SM_b20141 at 155.413 kb on + strand, within SM_b20141 at 155.413 kb on + strand, within SM_b20141 at 155.414 kb on - strand, within SM_b20141 at 155.603 kb on - strand, within SM_b20141 at 155.704 kb on + strand, within SM_b20141 at 155.705 kb on - strand, within SM_b20141 at 155.726 kb on - strand, within SM_b20141
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 152,990 + SM_b20138 0.88 -0.5 152,991 - SM_b20138 0.88 -2.2 152,991 - SM_b20138 0.88 +1.3 152,991 - SM_b20138 0.88 -1.3 152,991 - SM_b20138 0.88 +1.0 152,993 + SM_b20138 0.88 +0.7 152,994 - SM_b20138 0.88 +0.7 152,994 - SM_b20138 0.88 +0.1 152,994 - SM_b20138 0.88 -0.4 153,087 + +0.3 153,258 + +0.4 153,268 + -0.9 153,268 + +0.4 153,271 + +0.7 153,272 - +0.7 153,290 + +0.2 153,290 + +0.4 153,291 - -0.0 153,587 + SM_b20139 0.35 +1.7 153,588 - SM_b20139 0.35 +0.8 153,588 - SM_b20139 0.35 -0.7 153,588 - SM_b20139 0.35 +0.2 153,698 + SM_b20139 0.57 -0.9 153,887 + -1.2 154,100 + SM_b20140 0.20 -0.3 154,101 - SM_b20140 0.20 -2.3 154,256 + SM_b20140 0.37 +0.2 154,296 - SM_b20140 0.42 -0.6 154,344 + SM_b20140 0.47 +0.8 154,415 + SM_b20140 0.55 -0.1 154,415 + SM_b20140 0.55 -0.8 154,415 + SM_b20140 0.55 -1.4 154,416 - SM_b20140 0.55 -1.2 154,421 + SM_b20140 0.56 -0.3 154,422 - SM_b20140 0.56 +0.3 154,422 - SM_b20140 0.56 +1.7 154,422 - SM_b20140 0.56 -0.1 154,698 + SM_b20140 0.87 -0.3 154,698 + SM_b20140 0.87 +0.1 154,699 - SM_b20140 0.87 -1.6 154,699 - SM_b20140 0.87 -0.7 154,699 - SM_b20140 0.87 +0.0 154,749 - -0.2 154,863 + -0.1 154,864 - +0.1 154,922 + -3.8 154,923 - +0.6 154,925 - -0.5 154,940 + +0.5 155,002 + SM_b20141 0.12 +2.8 155,341 + SM_b20141 0.32 +0.3 155,413 + SM_b20141 0.37 -0.4 155,413 + SM_b20141 0.37 -1.8 155,414 - SM_b20141 0.37 -0.0 155,603 - SM_b20141 0.48 +0.1 155,704 + SM_b20141 0.54 +0.7 155,705 - SM_b20141 0.54 -0.7 155,726 - SM_b20141 0.56 -1.8
Or see this region's nucleotide sequence