Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20040 and SM_b20041 are separated by 190 nucleotides SM_b20041 and SM_b20042 are separated by 22 nucleotides
SM_b20040: SM_b20040 - hypothetical protein, at 50,652 to 51,512
_b20040
SM_b20041: SM_b20041 - hypothetical protein, at 51,703 to 52,233
_b20041
SM_b20042: SM_b20042 - hypothetical protein, at 52,256 to 53,413
_b20042
Position (kb) 51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 50.753 kb on + strand, within SM_b20040 at 50.754 kb on - strand, within SM_b20040 at 50.898 kb on - strand, within SM_b20040 at 51.136 kb on + strand, within SM_b20040 at 51.696 kb on + strand at 51.696 kb on + strand at 51.696 kb on + strand at 51.697 kb on - strand at 51.720 kb on - strand at 51.770 kb on + strand, within SM_b20041 at 51.925 kb on - strand, within SM_b20041 at 52.002 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.013 kb on - strand, within SM_b20041 at 52.165 kb on - strand, within SM_b20041 at 52.165 kb on - strand, within SM_b20041 at 52.606 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 53.213 kb on + strand, within SM_b20042
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 50,753 + SM_b20040 0.12 +0.5 50,754 - SM_b20040 0.12 -0.7 50,898 - SM_b20040 0.29 +0.2 51,136 + SM_b20040 0.56 -2.9 51,696 + -0.1 51,696 + +0.4 51,696 + +0.8 51,697 - -0.5 51,720 - -0.8 51,770 + SM_b20041 0.13 +2.3 51,925 - SM_b20041 0.42 -3.4 52,002 + SM_b20041 0.56 -1.3 52,012 + SM_b20041 0.58 -2.3 52,012 + SM_b20041 0.58 -1.8 52,012 + SM_b20041 0.58 -0.2 52,013 - SM_b20041 0.58 -1.1 52,165 - SM_b20041 0.87 -0.9 52,165 - SM_b20041 0.87 -2.3 52,606 - SM_b20042 0.30 +0.3 52,700 - SM_b20042 0.38 -3.1 52,700 - SM_b20042 0.38 +0.9 52,700 - SM_b20042 0.38 -0.9 52,700 - SM_b20042 0.38 +0.5 52,700 - SM_b20042 0.38 -0.3 53,213 + SM_b20042 0.83 -0.3
Or see this region's nucleotide sequence