Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS34810 and RR42_RS34815 are separated by 388 nucleotides RR42_RS34815 and RR42_RS34820 are separated by 291 nucleotides
RR42_RS34810: RR42_RS34810 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,256,661 to 3,259,198
_RS34810
RR42_RS34815: RR42_RS34815 - diguanylate cyclase, at 3,259,587 to 3,260,912
_RS34815
RR42_RS34820: RR42_RS34820 - chemotaxis protein, at 3,261,204 to 3,262,820
_RS34820
Position (kb)
3259
3260
3261 Strain fitness (log2 ratio)
-2
-1
0
1 at 3258.591 kb on + strand, within RR42_RS34810 at 3258.592 kb on - strand, within RR42_RS34810 at 3258.667 kb on + strand, within RR42_RS34810 at 3258.668 kb on - strand, within RR42_RS34810 at 3258.758 kb on + strand, within RR42_RS34810 at 3258.833 kb on + strand, within RR42_RS34810 at 3258.833 kb on + strand, within RR42_RS34810 at 3258.834 kb on - strand, within RR42_RS34810 at 3258.886 kb on + strand, within RR42_RS34810 at 3259.297 kb on + strand at 3259.297 kb on + strand at 3259.297 kb on + strand at 3259.297 kb on + strand at 3259.297 kb on + strand at 3259.297 kb on + strand at 3259.298 kb on - strand at 3259.313 kb on + strand at 3259.313 kb on + strand at 3259.353 kb on + strand at 3259.353 kb on + strand at 3259.353 kb on + strand at 3259.353 kb on + strand at 3259.354 kb on - strand at 3259.354 kb on - strand at 3259.354 kb on - strand at 3259.354 kb on - strand at 3259.398 kb on + strand at 3259.398 kb on + strand at 3259.398 kb on + strand at 3259.398 kb on + strand at 3259.399 kb on - strand at 3259.399 kb on - strand at 3259.399 kb on - strand at 3259.406 kb on + strand at 3259.406 kb on + strand at 3259.407 kb on - strand at 3259.407 kb on - strand at 3259.407 kb on - strand at 3259.588 kb on + strand at 3259.648 kb on + strand at 3259.654 kb on + strand at 3259.654 kb on + strand at 3259.655 kb on - strand at 3259.662 kb on + strand at 3259.663 kb on - strand at 3259.811 kb on + strand, within RR42_RS34815 at 3260.772 kb on + strand, within RR42_RS34815 at 3260.773 kb on - strand, within RR42_RS34815 at 3261.005 kb on + strand at 3261.005 kb on + strand at 3261.005 kb on + strand at 3261.005 kb on + strand at 3261.006 kb on - strand at 3261.006 kb on - strand at 3261.006 kb on - strand at 3261.080 kb on + strand at 3261.080 kb on + strand at 3261.081 kb on - strand at 3261.081 kb on - strand at 3261.085 kb on + strand at 3261.086 kb on - strand at 3261.086 kb on - strand at 3261.090 kb on + strand at 3261.129 kb on - strand at 3261.183 kb on + strand at 3261.183 kb on + strand at 3261.183 kb on + strand at 3261.183 kb on + strand at 3261.184 kb on - strand at 3261.184 kb on - strand at 3261.184 kb on - strand at 3261.184 kb on - strand at 3261.288 kb on + strand at 3261.289 kb on - strand at 3261.289 kb on - strand at 3261.354 kb on + strand at 3261.354 kb on + strand at 3261.354 kb on + strand at 3261.355 kb on - strand at 3261.355 kb on - strand at 3261.355 kb on - strand at 3261.355 kb on - strand at 3261.358 kb on - strand at 3261.393 kb on + strand, within RR42_RS34820 at 3261.393 kb on + strand, within RR42_RS34820 at 3261.393 kb on + strand, within RR42_RS34820 at 3261.393 kb on + strand, within RR42_RS34820 at 3261.394 kb on - strand, within RR42_RS34820 at 3261.394 kb on - strand, within RR42_RS34820 at 3261.394 kb on - strand, within RR42_RS34820 at 3261.394 kb on - strand, within RR42_RS34820 at 3261.394 kb on - strand, within RR42_RS34820 at 3261.447 kb on + strand, within RR42_RS34820 at 3261.447 kb on + strand, within RR42_RS34820 at 3261.448 kb on - strand, within RR42_RS34820 at 3261.501 kb on + strand, within RR42_RS34820 at 3261.545 kb on + strand, within RR42_RS34820 at 3261.549 kb on + strand, within RR42_RS34820 at 3261.549 kb on + strand, within RR42_RS34820 at 3261.549 kb on + strand, within RR42_RS34820 at 3261.550 kb on - strand, within RR42_RS34820 at 3261.550 kb on - strand, within RR42_RS34820 at 3261.570 kb on + strand, within RR42_RS34820 at 3261.571 kb on - strand, within RR42_RS34820 at 3261.836 kb on + strand, within RR42_RS34820 at 3261.837 kb on - strand, within RR42_RS34820 at 3261.837 kb on - strand, within RR42_RS34820 at 3261.837 kb on - strand, within RR42_RS34820 at 3261.841 kb on + strand, within RR42_RS34820
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,258,591 + RR42_RS34810 0.76 +0.6 3,258,592 - RR42_RS34810 0.76 -0.9 3,258,667 + RR42_RS34810 0.79 +0.1 3,258,668 - RR42_RS34810 0.79 -1.0 3,258,758 + RR42_RS34810 0.83 +0.3 3,258,833 + RR42_RS34810 0.86 -0.1 3,258,833 + RR42_RS34810 0.86 -0.8 3,258,834 - RR42_RS34810 0.86 -0.3 3,258,886 + RR42_RS34810 0.88 -1.0 3,259,297 + +0.6 3,259,297 + +0.7 3,259,297 + +0.0 3,259,297 + -0.9 3,259,297 + +0.5 3,259,297 + -1.0 3,259,298 - +0.8 3,259,313 + -0.9 3,259,313 + -0.1 3,259,353 + +0.2 3,259,353 + +0.7 3,259,353 + +0.0 3,259,353 + -0.1 3,259,354 - -0.8 3,259,354 - -0.6 3,259,354 - +0.2 3,259,354 - -2.7 3,259,398 + -0.6 3,259,398 + -0.8 3,259,398 + -1.1 3,259,398 + -0.0 3,259,399 - +0.2 3,259,399 - -0.1 3,259,399 - +0.2 3,259,406 + -0.6 3,259,406 + +1.0 3,259,407 - +0.6 3,259,407 - +0.5 3,259,407 - -0.2 3,259,588 + -1.3 3,259,648 + -0.4 3,259,654 + -0.4 3,259,654 + -0.5 3,259,655 - -0.3 3,259,662 + -2.7 3,259,663 - -0.8 3,259,811 + RR42_RS34815 0.17 -1.3 3,260,772 + RR42_RS34815 0.89 -0.6 3,260,773 - RR42_RS34815 0.89 -1.4 3,261,005 + +0.0 3,261,005 + -1.0 3,261,005 + -2.1 3,261,005 + -1.2 3,261,006 - -0.4 3,261,006 - +0.1 3,261,006 - +1.5 3,261,080 + -1.3 3,261,080 + -0.9 3,261,081 - -0.5 3,261,081 - -0.7 3,261,085 + -1.0 3,261,086 - -0.5 3,261,086 - +1.0 3,261,090 + +1.3 3,261,129 - -0.7 3,261,183 + +0.9 3,261,183 + +0.6 3,261,183 + -1.2 3,261,183 + +0.5 3,261,184 - +0.5 3,261,184 - -0.1 3,261,184 - -0.2 3,261,184 - -0.5 3,261,288 + -0.5 3,261,289 - +0.0 3,261,289 - -2.4 3,261,354 + -1.4 3,261,354 + -0.4 3,261,354 + -1.2 3,261,355 - -1.2 3,261,355 - -0.6 3,261,355 - +0.2 3,261,355 - -0.7 3,261,358 - -0.0 3,261,393 + RR42_RS34820 0.12 -0.4 3,261,393 + RR42_RS34820 0.12 +0.8 3,261,393 + RR42_RS34820 0.12 +0.9 3,261,393 + RR42_RS34820 0.12 -0.2 3,261,394 - RR42_RS34820 0.12 -1.4 3,261,394 - RR42_RS34820 0.12 +0.8 3,261,394 - RR42_RS34820 0.12 -0.8 3,261,394 - RR42_RS34820 0.12 -0.4 3,261,394 - RR42_RS34820 0.12 +0.3 3,261,447 + RR42_RS34820 0.15 -0.3 3,261,447 + RR42_RS34820 0.15 +0.3 3,261,448 - RR42_RS34820 0.15 +0.0 3,261,501 + RR42_RS34820 0.18 +0.9 3,261,545 + RR42_RS34820 0.21 -0.9 3,261,549 + RR42_RS34820 0.21 -0.4 3,261,549 + RR42_RS34820 0.21 -0.7 3,261,549 + RR42_RS34820 0.21 -0.3 3,261,550 - RR42_RS34820 0.21 +1.1 3,261,550 - RR42_RS34820 0.21 -0.5 3,261,570 + RR42_RS34820 0.23 -0.6 3,261,571 - RR42_RS34820 0.23 -2.2 3,261,836 + RR42_RS34820 0.39 +0.1 3,261,837 - RR42_RS34820 0.39 -1.2 3,261,837 - RR42_RS34820 0.39 -1.7 3,261,837 - RR42_RS34820 0.39 -1.0 3,261,841 + RR42_RS34820 0.39 -1.3
Or see this region's nucleotide sequence