Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34815

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34810 and RR42_RS34815 are separated by 388 nucleotidesRR42_RS34815 and RR42_RS34820 are separated by 291 nucleotides RR42_RS34810: RR42_RS34810 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,256,661 to 3,259,198 _RS34810 RR42_RS34815: RR42_RS34815 - diguanylate cyclase, at 3,259,587 to 3,260,912 _RS34815 RR42_RS34820: RR42_RS34820 - chemotaxis protein, at 3,261,204 to 3,262,820 _RS34820 Position (kb) 3259 3260 3261Strain fitness (log2 ratio) -2 -1 0 1at 3258.591 kb on + strand, within RR42_RS34810at 3258.592 kb on - strand, within RR42_RS34810at 3258.667 kb on + strand, within RR42_RS34810at 3258.668 kb on - strand, within RR42_RS34810at 3258.758 kb on + strand, within RR42_RS34810at 3258.833 kb on + strand, within RR42_RS34810at 3258.833 kb on + strand, within RR42_RS34810at 3258.834 kb on - strand, within RR42_RS34810at 3258.886 kb on + strand, within RR42_RS34810at 3259.297 kb on + strandat 3259.297 kb on + strandat 3259.297 kb on + strandat 3259.297 kb on + strandat 3259.297 kb on + strandat 3259.297 kb on + strandat 3259.298 kb on - strandat 3259.313 kb on + strandat 3259.313 kb on + strandat 3259.353 kb on + strandat 3259.353 kb on + strandat 3259.353 kb on + strandat 3259.353 kb on + strandat 3259.354 kb on - strandat 3259.354 kb on - strandat 3259.354 kb on - strandat 3259.354 kb on - strandat 3259.398 kb on + strandat 3259.398 kb on + strandat 3259.398 kb on + strandat 3259.398 kb on + strandat 3259.399 kb on - strandat 3259.399 kb on - strandat 3259.399 kb on - strandat 3259.406 kb on + strandat 3259.406 kb on + strandat 3259.407 kb on - strandat 3259.407 kb on - strandat 3259.407 kb on - strandat 3259.588 kb on + strandat 3259.648 kb on + strandat 3259.654 kb on + strandat 3259.654 kb on + strandat 3259.655 kb on - strandat 3259.662 kb on + strandat 3259.663 kb on - strandat 3259.811 kb on + strand, within RR42_RS34815at 3260.772 kb on + strand, within RR42_RS34815at 3260.773 kb on - strand, within RR42_RS34815at 3261.005 kb on + strandat 3261.005 kb on + strandat 3261.005 kb on + strandat 3261.005 kb on + strandat 3261.006 kb on - strandat 3261.006 kb on - strandat 3261.006 kb on - strandat 3261.080 kb on + strandat 3261.080 kb on + strandat 3261.081 kb on - strandat 3261.081 kb on - strandat 3261.085 kb on + strandat 3261.086 kb on - strandat 3261.086 kb on - strandat 3261.090 kb on + strandat 3261.129 kb on - strandat 3261.183 kb on + strandat 3261.183 kb on + strandat 3261.183 kb on + strandat 3261.183 kb on + strandat 3261.184 kb on - strandat 3261.184 kb on - strandat 3261.184 kb on - strandat 3261.184 kb on - strandat 3261.288 kb on + strandat 3261.289 kb on - strandat 3261.289 kb on - strandat 3261.354 kb on + strandat 3261.354 kb on + strandat 3261.354 kb on + strandat 3261.355 kb on - strandat 3261.355 kb on - strandat 3261.355 kb on - strandat 3261.355 kb on - strandat 3261.358 kb on - strandat 3261.393 kb on + strand, within RR42_RS34820at 3261.393 kb on + strand, within RR42_RS34820at 3261.393 kb on + strand, within RR42_RS34820at 3261.393 kb on + strand, within RR42_RS34820at 3261.394 kb on - strand, within RR42_RS34820at 3261.394 kb on - strand, within RR42_RS34820at 3261.394 kb on - strand, within RR42_RS34820at 3261.394 kb on - strand, within RR42_RS34820at 3261.394 kb on - strand, within RR42_RS34820at 3261.447 kb on + strand, within RR42_RS34820at 3261.447 kb on + strand, within RR42_RS34820at 3261.448 kb on - strand, within RR42_RS34820at 3261.501 kb on + strand, within RR42_RS34820at 3261.545 kb on + strand, within RR42_RS34820at 3261.549 kb on + strand, within RR42_RS34820at 3261.549 kb on + strand, within RR42_RS34820at 3261.549 kb on + strand, within RR42_RS34820at 3261.550 kb on - strand, within RR42_RS34820at 3261.550 kb on - strand, within RR42_RS34820at 3261.570 kb on + strand, within RR42_RS34820at 3261.571 kb on - strand, within RR42_RS34820at 3261.836 kb on + strand, within RR42_RS34820at 3261.837 kb on - strand, within RR42_RS34820at 3261.837 kb on - strand, within RR42_RS34820at 3261.837 kb on - strand, within RR42_RS34820at 3261.841 kb on + strand, within RR42_RS34820

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,258,591 + RR42_RS34810 0.76 +0.6
3,258,592 - RR42_RS34810 0.76 -0.9
3,258,667 + RR42_RS34810 0.79 +0.1
3,258,668 - RR42_RS34810 0.79 -1.0
3,258,758 + RR42_RS34810 0.83 +0.3
3,258,833 + RR42_RS34810 0.86 -0.1
3,258,833 + RR42_RS34810 0.86 -0.8
3,258,834 - RR42_RS34810 0.86 -0.3
3,258,886 + RR42_RS34810 0.88 -1.0
3,259,297 + +0.6
3,259,297 + +0.7
3,259,297 + +0.0
3,259,297 + -0.9
3,259,297 + +0.5
3,259,297 + -1.0
3,259,298 - +0.8
3,259,313 + -0.9
3,259,313 + -0.1
3,259,353 + +0.2
3,259,353 + +0.7
3,259,353 + +0.0
3,259,353 + -0.1
3,259,354 - -0.8
3,259,354 - -0.6
3,259,354 - +0.2
3,259,354 - -2.7
3,259,398 + -0.6
3,259,398 + -0.8
3,259,398 + -1.1
3,259,398 + -0.0
3,259,399 - +0.2
3,259,399 - -0.1
3,259,399 - +0.2
3,259,406 + -0.6
3,259,406 + +1.0
3,259,407 - +0.6
3,259,407 - +0.5
3,259,407 - -0.2
3,259,588 + -1.3
3,259,648 + -0.4
3,259,654 + -0.4
3,259,654 + -0.5
3,259,655 - -0.3
3,259,662 + -2.7
3,259,663 - -0.8
3,259,811 + RR42_RS34815 0.17 -1.3
3,260,772 + RR42_RS34815 0.89 -0.6
3,260,773 - RR42_RS34815 0.89 -1.4
3,261,005 + +0.0
3,261,005 + -1.0
3,261,005 + -2.1
3,261,005 + -1.2
3,261,006 - -0.4
3,261,006 - +0.1
3,261,006 - +1.5
3,261,080 + -1.3
3,261,080 + -0.9
3,261,081 - -0.5
3,261,081 - -0.7
3,261,085 + -1.0
3,261,086 - -0.5
3,261,086 - +1.0
3,261,090 + +1.3
3,261,129 - -0.7
3,261,183 + +0.9
3,261,183 + +0.6
3,261,183 + -1.2
3,261,183 + +0.5
3,261,184 - +0.5
3,261,184 - -0.1
3,261,184 - -0.2
3,261,184 - -0.5
3,261,288 + -0.5
3,261,289 - +0.0
3,261,289 - -2.4
3,261,354 + -1.4
3,261,354 + -0.4
3,261,354 + -1.2
3,261,355 - -1.2
3,261,355 - -0.6
3,261,355 - +0.2
3,261,355 - -0.7
3,261,358 - -0.0
3,261,393 + RR42_RS34820 0.12 -0.4
3,261,393 + RR42_RS34820 0.12 +0.8
3,261,393 + RR42_RS34820 0.12 +0.9
3,261,393 + RR42_RS34820 0.12 -0.2
3,261,394 - RR42_RS34820 0.12 -1.4
3,261,394 - RR42_RS34820 0.12 +0.8
3,261,394 - RR42_RS34820 0.12 -0.8
3,261,394 - RR42_RS34820 0.12 -0.4
3,261,394 - RR42_RS34820 0.12 +0.3
3,261,447 + RR42_RS34820 0.15 -0.3
3,261,447 + RR42_RS34820 0.15 +0.3
3,261,448 - RR42_RS34820 0.15 +0.0
3,261,501 + RR42_RS34820 0.18 +0.9
3,261,545 + RR42_RS34820 0.21 -0.9
3,261,549 + RR42_RS34820 0.21 -0.4
3,261,549 + RR42_RS34820 0.21 -0.7
3,261,549 + RR42_RS34820 0.21 -0.3
3,261,550 - RR42_RS34820 0.21 +1.1
3,261,550 - RR42_RS34820 0.21 -0.5
3,261,570 + RR42_RS34820 0.23 -0.6
3,261,571 - RR42_RS34820 0.23 -2.2
3,261,836 + RR42_RS34820 0.39 +0.1
3,261,837 - RR42_RS34820 0.39 -1.2
3,261,837 - RR42_RS34820 0.39 -1.7
3,261,837 - RR42_RS34820 0.39 -1.0
3,261,841 + RR42_RS34820 0.39 -1.3

Or see this region's nucleotide sequence