Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34185

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34180 and RR42_RS34185 are separated by 609 nucleotidesRR42_RS34185 and RR42_RS34190 are separated by 320 nucleotides RR42_RS34180: RR42_RS34180 - hypothetical protein, at 3,093,777 to 3,094,625 _RS34180 RR42_RS34185: RR42_RS34185 - hypothetical protein, at 3,095,235 to 3,095,978 _RS34185 RR42_RS34190: RR42_RS34190 - LysR family transcriptional regulator, at 3,096,299 to 3,097,201 _RS34190 Position (kb) 3095 3096Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3094.480 kb on - strand, within RR42_RS34180at 3094.615 kb on + strandat 3094.615 kb on + strandat 3094.616 kb on - strandat 3094.884 kb on + strandat 3094.884 kb on + strandat 3094.885 kb on - strandat 3094.886 kb on + strandat 3094.887 kb on - strandat 3094.887 kb on - strandat 3094.933 kb on + strandat 3094.933 kb on + strandat 3094.945 kb on + strandat 3094.946 kb on - strandat 3094.946 kb on - strandat 3094.946 kb on - strandat 3094.967 kb on + strandat 3094.967 kb on + strandat 3094.967 kb on + strandat 3094.968 kb on - strandat 3094.968 kb on - strandat 3094.976 kb on - strandat 3094.976 kb on - strandat 3094.999 kb on + strandat 3095.000 kb on - strandat 3095.123 kb on - strandat 3095.206 kb on + strandat 3095.206 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.234 kb on - strandat 3095.576 kb on + strand, within RR42_RS34185at 3095.576 kb on + strand, within RR42_RS34185at 3095.576 kb on + strand, within RR42_RS34185at 3095.708 kb on + strand, within RR42_RS34185at 3095.709 kb on - strand, within RR42_RS34185at 3095.977 kb on - strandat 3096.044 kb on + strandat 3096.045 kb on - strandat 3096.134 kb on + strandat 3096.135 kb on - strandat 3096.135 kb on - strandat 3096.135 kb on - strandat 3096.135 kb on - strandat 3096.136 kb on + strandat 3096.136 kb on + strandat 3096.136 kb on + strandat 3096.137 kb on - strandat 3096.141 kb on + strandat 3096.141 kb on + strandat 3096.142 kb on - strandat 3096.151 kb on + strandat 3096.151 kb on + strandat 3096.151 kb on + strandat 3096.281 kb on + strandat 3096.488 kb on + strand, within RR42_RS34190at 3096.488 kb on + strand, within RR42_RS34190at 3096.489 kb on - strand, within RR42_RS34190at 3096.491 kb on + strand, within RR42_RS34190at 3096.540 kb on + strand, within RR42_RS34190at 3096.540 kb on + strand, within RR42_RS34190at 3096.541 kb on - strand, within RR42_RS34190at 3096.614 kb on - strand, within RR42_RS34190at 3096.614 kb on - strand, within RR42_RS34190at 3096.614 kb on - strand, within RR42_RS34190at 3096.614 kb on - strand, within RR42_RS34190at 3096.795 kb on - strand, within RR42_RS34190at 3096.972 kb on - strand, within RR42_RS34190

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,094,480 - RR42_RS34180 0.83 -0.0
3,094,615 + -0.1
3,094,615 + +0.9
3,094,616 - +1.4
3,094,884 + -0.5
3,094,884 + -0.3
3,094,885 - -0.3
3,094,886 + +0.1
3,094,887 - +1.2
3,094,887 - +0.9
3,094,933 + +0.3
3,094,933 + -2.3
3,094,945 + +0.0
3,094,946 - -1.3
3,094,946 - +0.7
3,094,946 - -0.5
3,094,967 + -1.1
3,094,967 + -0.4
3,094,967 + -1.0
3,094,968 - -0.2
3,094,968 - -0.3
3,094,976 - -1.3
3,094,976 - -0.8
3,094,999 + +0.6
3,095,000 - -0.2
3,095,123 - +0.5
3,095,206 + +0.0
3,095,206 + -0.5
3,095,233 + +0.5
3,095,233 + -0.1
3,095,234 - +0.0
3,095,576 + RR42_RS34185 0.46 -0.7
3,095,576 + RR42_RS34185 0.46 -1.0
3,095,576 + RR42_RS34185 0.46 -0.1
3,095,708 + RR42_RS34185 0.64 -1.2
3,095,709 - RR42_RS34185 0.64 -3.9
3,095,977 - +0.6
3,096,044 + -0.2
3,096,045 - +0.4
3,096,134 + -0.1
3,096,135 - +0.4
3,096,135 - -0.5
3,096,135 - -0.7
3,096,135 - +0.6
3,096,136 + +0.4
3,096,136 + +0.7
3,096,136 + +0.3
3,096,137 - +0.6
3,096,141 + +0.5
3,096,141 + +0.4
3,096,142 - -0.8
3,096,151 + -0.9
3,096,151 + -0.9
3,096,151 + -0.6
3,096,281 + -2.2
3,096,488 + RR42_RS34190 0.21 -0.6
3,096,488 + RR42_RS34190 0.21 -0.2
3,096,489 - RR42_RS34190 0.21 -1.3
3,096,491 + RR42_RS34190 0.21 -1.5
3,096,540 + RR42_RS34190 0.27 -0.5
3,096,540 + RR42_RS34190 0.27 +0.5
3,096,541 - RR42_RS34190 0.27 +0.0
3,096,614 - RR42_RS34190 0.35 -0.6
3,096,614 - RR42_RS34190 0.35 +1.0
3,096,614 - RR42_RS34190 0.35 +0.3
3,096,614 - RR42_RS34190 0.35 -0.8
3,096,795 - RR42_RS34190 0.55 -0.0
3,096,972 - RR42_RS34190 0.75 +0.4

Or see this region's nucleotide sequence