Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS34180 and RR42_RS34185 are separated by 609 nucleotides RR42_RS34185 and RR42_RS34190 are separated by 320 nucleotides
RR42_RS34180: RR42_RS34180 - hypothetical protein, at 3,093,777 to 3,094,625
_RS34180
RR42_RS34185: RR42_RS34185 - hypothetical protein, at 3,095,235 to 3,095,978
_RS34185
RR42_RS34190: RR42_RS34190 - LysR family transcriptional regulator, at 3,096,299 to 3,097,201
_RS34190
Position (kb)
3095
3096 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3094.480 kb on - strand, within RR42_RS34180 at 3094.615 kb on + strand at 3094.615 kb on + strand at 3094.616 kb on - strand at 3094.884 kb on + strand at 3094.884 kb on + strand at 3094.885 kb on - strand at 3094.886 kb on + strand at 3094.887 kb on - strand at 3094.887 kb on - strand at 3094.933 kb on + strand at 3094.933 kb on + strand at 3094.945 kb on + strand at 3094.946 kb on - strand at 3094.946 kb on - strand at 3094.946 kb on - strand at 3094.967 kb on + strand at 3094.967 kb on + strand at 3094.967 kb on + strand at 3094.968 kb on - strand at 3094.968 kb on - strand at 3094.976 kb on - strand at 3094.976 kb on - strand at 3094.999 kb on + strand at 3095.000 kb on - strand at 3095.123 kb on - strand at 3095.206 kb on + strand at 3095.206 kb on + strand at 3095.233 kb on + strand at 3095.233 kb on + strand at 3095.234 kb on - strand at 3095.576 kb on + strand, within RR42_RS34185 at 3095.576 kb on + strand, within RR42_RS34185 at 3095.576 kb on + strand, within RR42_RS34185 at 3095.708 kb on + strand, within RR42_RS34185 at 3095.709 kb on - strand, within RR42_RS34185 at 3095.977 kb on - strand at 3096.044 kb on + strand at 3096.045 kb on - strand at 3096.134 kb on + strand at 3096.135 kb on - strand at 3096.135 kb on - strand at 3096.135 kb on - strand at 3096.135 kb on - strand at 3096.136 kb on + strand at 3096.136 kb on + strand at 3096.136 kb on + strand at 3096.137 kb on - strand at 3096.141 kb on + strand at 3096.141 kb on + strand at 3096.142 kb on - strand at 3096.151 kb on + strand at 3096.151 kb on + strand at 3096.151 kb on + strand at 3096.281 kb on + strand at 3096.488 kb on + strand, within RR42_RS34190 at 3096.488 kb on + strand, within RR42_RS34190 at 3096.489 kb on - strand, within RR42_RS34190 at 3096.491 kb on + strand, within RR42_RS34190 at 3096.540 kb on + strand, within RR42_RS34190 at 3096.540 kb on + strand, within RR42_RS34190 at 3096.541 kb on - strand, within RR42_RS34190 at 3096.614 kb on - strand, within RR42_RS34190 at 3096.614 kb on - strand, within RR42_RS34190 at 3096.614 kb on - strand, within RR42_RS34190 at 3096.614 kb on - strand, within RR42_RS34190 at 3096.795 kb on - strand, within RR42_RS34190 at 3096.972 kb on - strand, within RR42_RS34190
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,094,480 - RR42_RS34180 0.83 -0.0 3,094,615 + -0.1 3,094,615 + +0.9 3,094,616 - +1.4 3,094,884 + -0.5 3,094,884 + -0.3 3,094,885 - -0.3 3,094,886 + +0.1 3,094,887 - +1.2 3,094,887 - +0.9 3,094,933 + +0.3 3,094,933 + -2.3 3,094,945 + +0.0 3,094,946 - -1.3 3,094,946 - +0.7 3,094,946 - -0.5 3,094,967 + -1.1 3,094,967 + -0.4 3,094,967 + -1.0 3,094,968 - -0.2 3,094,968 - -0.3 3,094,976 - -1.3 3,094,976 - -0.8 3,094,999 + +0.6 3,095,000 - -0.2 3,095,123 - +0.5 3,095,206 + +0.0 3,095,206 + -0.5 3,095,233 + +0.5 3,095,233 + -0.1 3,095,234 - +0.0 3,095,576 + RR42_RS34185 0.46 -0.7 3,095,576 + RR42_RS34185 0.46 -1.0 3,095,576 + RR42_RS34185 0.46 -0.1 3,095,708 + RR42_RS34185 0.64 -1.2 3,095,709 - RR42_RS34185 0.64 -3.9 3,095,977 - +0.6 3,096,044 + -0.2 3,096,045 - +0.4 3,096,134 + -0.1 3,096,135 - +0.4 3,096,135 - -0.5 3,096,135 - -0.7 3,096,135 - +0.6 3,096,136 + +0.4 3,096,136 + +0.7 3,096,136 + +0.3 3,096,137 - +0.6 3,096,141 + +0.5 3,096,141 + +0.4 3,096,142 - -0.8 3,096,151 + -0.9 3,096,151 + -0.9 3,096,151 + -0.6 3,096,281 + -2.2 3,096,488 + RR42_RS34190 0.21 -0.6 3,096,488 + RR42_RS34190 0.21 -0.2 3,096,489 - RR42_RS34190 0.21 -1.3 3,096,491 + RR42_RS34190 0.21 -1.5 3,096,540 + RR42_RS34190 0.27 -0.5 3,096,540 + RR42_RS34190 0.27 +0.5 3,096,541 - RR42_RS34190 0.27 +0.0 3,096,614 - RR42_RS34190 0.35 -0.6 3,096,614 - RR42_RS34190 0.35 +1.0 3,096,614 - RR42_RS34190 0.35 +0.3 3,096,614 - RR42_RS34190 0.35 -0.8 3,096,795 - RR42_RS34190 0.55 -0.0 3,096,972 - RR42_RS34190 0.75 +0.4
Or see this region's nucleotide sequence