Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS33250 and RR42_RS33255 are separated by 20 nucleotides RR42_RS33255 and RR42_RS33260 overlap by 4 nucleotides
RR42_RS33250: RR42_RS33250 - tyrosine protein kinase, at 2,874,255 to 2,876,510
_RS33250
RR42_RS33255: RR42_RS33255 - protein-tyrosine phosphatase, at 2,876,531 to 2,876,968
_RS33255
RR42_RS33260: RR42_RS33260 - multidrug MFS transporter, at 2,876,965 to 2,878,104
_RS33260
Position (kb)
2876
2877
2878
2879 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2876.080 kb on + strand, within RR42_RS33250 at 2876.177 kb on + strand, within RR42_RS33250 at 2876.177 kb on + strand, within RR42_RS33250 at 2876.178 kb on - strand, within RR42_RS33250 at 2876.179 kb on + strand, within RR42_RS33250 at 2876.179 kb on + strand at 2876.306 kb on + strand at 2876.306 kb on + strand at 2876.368 kb on + strand at 2876.384 kb on + strand at 2876.430 kb on + strand at 2876.443 kb on + strand at 2876.517 kb on + strand at 2876.699 kb on + strand, within RR42_RS33255 at 2876.700 kb on - strand, within RR42_RS33255 at 2876.858 kb on + strand, within RR42_RS33255 at 2877.062 kb on + strand at 2877.176 kb on + strand, within RR42_RS33260 at 2877.176 kb on + strand, within RR42_RS33260 at 2877.176 kb on + strand, within RR42_RS33260 at 2877.401 kb on - strand, within RR42_RS33260 at 2877.403 kb on + strand, within RR42_RS33260 at 2877.403 kb on + strand, within RR42_RS33260 at 2877.407 kb on + strand, within RR42_RS33260 at 2877.414 kb on + strand, within RR42_RS33260 at 2877.668 kb on - strand, within RR42_RS33260 at 2877.715 kb on + strand, within RR42_RS33260 at 2877.715 kb on + strand, within RR42_RS33260 at 2877.715 kb on + strand, within RR42_RS33260 at 2877.715 kb on + strand, within RR42_RS33260 at 2877.715 kb on + strand, within RR42_RS33260 at 2877.716 kb on - strand, within RR42_RS33260 at 2877.722 kb on + strand, within RR42_RS33260 at 2877.782 kb on + strand, within RR42_RS33260 at 2877.821 kb on - strand, within RR42_RS33260 at 2877.837 kb on + strand, within RR42_RS33260 at 2877.844 kb on + strand, within RR42_RS33260 at 2877.855 kb on + strand, within RR42_RS33260 at 2877.857 kb on + strand, within RR42_RS33260 at 2877.857 kb on + strand, within RR42_RS33260 at 2877.912 kb on + strand, within RR42_RS33260 at 2878.071 kb on + strand at 2878.112 kb on + strand at 2878.113 kb on - strand at 2878.113 kb on - strand at 2878.321 kb on - strand at 2878.321 kb on - strand at 2878.722 kb on + strand at 2878.722 kb on + strand at 2878.768 kb on - strand at 2878.768 kb on - strand at 2878.914 kb on - strand at 2878.914 kb on - strand at 2878.990 kb on - strand at 2878.990 kb on - strand at 2879.003 kb on + strand at 2879.003 kb on + strand at 2879.020 kb on + strand at 2879.020 kb on + strand at 2879.020 kb on + strand at 2879.021 kb on - strand at 2879.021 kb on - strand at 2879.021 kb on - strand at 2879.021 kb on - strand at 2879.038 kb on - strand at 2879.038 kb on - strand at 2879.067 kb on + strand at 2879.068 kb on - strand at 2879.068 kb on - strand at 2879.068 kb on - strand at 2879.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 2,876,080 + RR42_RS33250 0.81 -4.5 2,876,177 + RR42_RS33250 0.85 -1.4 2,876,177 + RR42_RS33250 0.85 -5.6 2,876,178 - RR42_RS33250 0.85 -3.6 2,876,179 + RR42_RS33250 0.85 -2.6 2,876,179 + -0.7 2,876,306 + -1.1 2,876,306 + -3.6 2,876,368 + -6.0 2,876,384 + -3.9 2,876,430 + -1.1 2,876,443 + -2.6 2,876,517 + -1.3 2,876,699 + RR42_RS33255 0.38 -5.5 2,876,700 - RR42_RS33255 0.39 -2.3 2,876,858 + RR42_RS33255 0.75 -1.4 2,877,062 + -5.4 2,877,176 + RR42_RS33260 0.19 -3.6 2,877,176 + RR42_RS33260 0.19 -3.3 2,877,176 + RR42_RS33260 0.19 -0.1 2,877,401 - RR42_RS33260 0.38 -2.9 2,877,403 + RR42_RS33260 0.38 -4.7 2,877,403 + RR42_RS33260 0.38 -2.6 2,877,407 + RR42_RS33260 0.39 -2.3 2,877,414 + RR42_RS33260 0.39 -2.6 2,877,668 - RR42_RS33260 0.62 -1.4 2,877,715 + RR42_RS33260 0.66 -1.1 2,877,715 + RR42_RS33260 0.66 -0.9 2,877,715 + RR42_RS33260 0.66 -3.0 2,877,715 + RR42_RS33260 0.66 -3.9 2,877,715 + RR42_RS33260 0.66 -3.4 2,877,716 - RR42_RS33260 0.66 -4.2 2,877,722 + RR42_RS33260 0.66 -4.6 2,877,782 + RR42_RS33260 0.72 -2.7 2,877,821 - RR42_RS33260 0.75 -1.7 2,877,837 + RR42_RS33260 0.76 -2.6 2,877,844 + RR42_RS33260 0.77 -1.4 2,877,855 + RR42_RS33260 0.78 -0.1 2,877,857 + RR42_RS33260 0.78 -2.6 2,877,857 + RR42_RS33260 0.78 -5.3 2,877,912 + RR42_RS33260 0.83 -1.9 2,878,071 + -4.8 2,878,112 + -3.0 2,878,113 - -0.4 2,878,113 - -0.0 2,878,321 - +0.1 2,878,321 - +0.9 2,878,722 + -2.3 2,878,722 + +1.5 2,878,768 - -0.6 2,878,768 - -0.1 2,878,914 - +0.1 2,878,914 - -0.1 2,878,990 - -0.4 2,878,990 - -0.1 2,879,003 + -0.2 2,879,003 + +0.0 2,879,020 + -1.9 2,879,020 + +0.1 2,879,020 + +0.2 2,879,021 - -0.3 2,879,021 - +0.1 2,879,021 - +1.7 2,879,021 - -2.1 2,879,038 - -0.7 2,879,038 - -0.1 2,879,067 + +0.1 2,879,068 - +0.5 2,879,068 - +1.0 2,879,068 - -0.4 2,879,101 - -0.1
Or see this region's nucleotide sequence