Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33260

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS33250 and RR42_RS33255 are separated by 20 nucleotidesRR42_RS33255 and RR42_RS33260 overlap by 4 nucleotides RR42_RS33250: RR42_RS33250 - tyrosine protein kinase, at 2,874,255 to 2,876,510 _RS33250 RR42_RS33255: RR42_RS33255 - protein-tyrosine phosphatase, at 2,876,531 to 2,876,968 _RS33255 RR42_RS33260: RR42_RS33260 - multidrug MFS transporter, at 2,876,965 to 2,878,104 _RS33260 Position (kb) 2876 2877 2878 2879Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2876.080 kb on + strand, within RR42_RS33250at 2876.177 kb on + strand, within RR42_RS33250at 2876.177 kb on + strand, within RR42_RS33250at 2876.178 kb on - strand, within RR42_RS33250at 2876.179 kb on + strand, within RR42_RS33250at 2876.179 kb on + strandat 2876.306 kb on + strandat 2876.306 kb on + strandat 2876.368 kb on + strandat 2876.384 kb on + strandat 2876.430 kb on + strandat 2876.443 kb on + strandat 2876.517 kb on + strandat 2876.699 kb on + strand, within RR42_RS33255at 2876.700 kb on - strand, within RR42_RS33255at 2876.858 kb on + strand, within RR42_RS33255at 2877.062 kb on + strandat 2877.176 kb on + strand, within RR42_RS33260at 2877.176 kb on + strand, within RR42_RS33260at 2877.176 kb on + strand, within RR42_RS33260at 2877.401 kb on - strand, within RR42_RS33260at 2877.403 kb on + strand, within RR42_RS33260at 2877.403 kb on + strand, within RR42_RS33260at 2877.407 kb on + strand, within RR42_RS33260at 2877.414 kb on + strand, within RR42_RS33260at 2877.668 kb on - strand, within RR42_RS33260at 2877.715 kb on + strand, within RR42_RS33260at 2877.715 kb on + strand, within RR42_RS33260at 2877.715 kb on + strand, within RR42_RS33260at 2877.715 kb on + strand, within RR42_RS33260at 2877.715 kb on + strand, within RR42_RS33260at 2877.716 kb on - strand, within RR42_RS33260at 2877.722 kb on + strand, within RR42_RS33260at 2877.782 kb on + strand, within RR42_RS33260at 2877.821 kb on - strand, within RR42_RS33260at 2877.837 kb on + strand, within RR42_RS33260at 2877.844 kb on + strand, within RR42_RS33260at 2877.855 kb on + strand, within RR42_RS33260at 2877.857 kb on + strand, within RR42_RS33260at 2877.857 kb on + strand, within RR42_RS33260at 2877.912 kb on + strand, within RR42_RS33260at 2878.071 kb on + strandat 2878.112 kb on + strandat 2878.113 kb on - strandat 2878.113 kb on - strandat 2878.321 kb on - strandat 2878.321 kb on - strandat 2878.722 kb on + strandat 2878.722 kb on + strandat 2878.768 kb on - strandat 2878.768 kb on - strandat 2878.914 kb on - strandat 2878.914 kb on - strandat 2878.990 kb on - strandat 2878.990 kb on - strandat 2879.003 kb on + strandat 2879.003 kb on + strandat 2879.020 kb on + strandat 2879.020 kb on + strandat 2879.020 kb on + strandat 2879.021 kb on - strandat 2879.021 kb on - strandat 2879.021 kb on - strandat 2879.021 kb on - strandat 2879.038 kb on - strandat 2879.038 kb on - strandat 2879.067 kb on + strandat 2879.068 kb on - strandat 2879.068 kb on - strandat 2879.068 kb on - strandat 2879.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,876,080 + RR42_RS33250 0.81 -4.5
2,876,177 + RR42_RS33250 0.85 -1.4
2,876,177 + RR42_RS33250 0.85 -5.6
2,876,178 - RR42_RS33250 0.85 -3.6
2,876,179 + RR42_RS33250 0.85 -2.6
2,876,179 + -0.7
2,876,306 + -1.1
2,876,306 + -3.6
2,876,368 + -6.0
2,876,384 + -3.9
2,876,430 + -1.1
2,876,443 + -2.6
2,876,517 + -1.3
2,876,699 + RR42_RS33255 0.38 -5.5
2,876,700 - RR42_RS33255 0.39 -2.3
2,876,858 + RR42_RS33255 0.75 -1.4
2,877,062 + -5.4
2,877,176 + RR42_RS33260 0.19 -3.6
2,877,176 + RR42_RS33260 0.19 -3.3
2,877,176 + RR42_RS33260 0.19 -0.1
2,877,401 - RR42_RS33260 0.38 -2.9
2,877,403 + RR42_RS33260 0.38 -4.7
2,877,403 + RR42_RS33260 0.38 -2.6
2,877,407 + RR42_RS33260 0.39 -2.3
2,877,414 + RR42_RS33260 0.39 -2.6
2,877,668 - RR42_RS33260 0.62 -1.4
2,877,715 + RR42_RS33260 0.66 -1.1
2,877,715 + RR42_RS33260 0.66 -0.9
2,877,715 + RR42_RS33260 0.66 -3.0
2,877,715 + RR42_RS33260 0.66 -3.9
2,877,715 + RR42_RS33260 0.66 -3.4
2,877,716 - RR42_RS33260 0.66 -4.2
2,877,722 + RR42_RS33260 0.66 -4.6
2,877,782 + RR42_RS33260 0.72 -2.7
2,877,821 - RR42_RS33260 0.75 -1.7
2,877,837 + RR42_RS33260 0.76 -2.6
2,877,844 + RR42_RS33260 0.77 -1.4
2,877,855 + RR42_RS33260 0.78 -0.1
2,877,857 + RR42_RS33260 0.78 -2.6
2,877,857 + RR42_RS33260 0.78 -5.3
2,877,912 + RR42_RS33260 0.83 -1.9
2,878,071 + -4.8
2,878,112 + -3.0
2,878,113 - -0.4
2,878,113 - -0.0
2,878,321 - +0.1
2,878,321 - +0.9
2,878,722 + -2.3
2,878,722 + +1.5
2,878,768 - -0.6
2,878,768 - -0.1
2,878,914 - +0.1
2,878,914 - -0.1
2,878,990 - -0.4
2,878,990 - -0.1
2,879,003 + -0.2
2,879,003 + +0.0
2,879,020 + -1.9
2,879,020 + +0.1
2,879,020 + +0.2
2,879,021 - -0.3
2,879,021 - +0.1
2,879,021 - +1.7
2,879,021 - -2.1
2,879,038 - -0.7
2,879,038 - -0.1
2,879,067 + +0.1
2,879,068 - +0.5
2,879,068 - +1.0
2,879,068 - -0.4
2,879,101 - -0.1

Or see this region's nucleotide sequence