Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33215

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS33210 and RR42_RS33215 are separated by 320 nucleotides RR42_RS33210: RR42_RS33210 - teichoic acid biosynthesis protein, at 2,857,770 to 2,858,537 _RS33210 RR42_RS33215: RR42_RS33215 - transferase, at 2,858,858 to 2,860,024 _RS33215 Position (kb) 2858 2859 2860 2861Strain fitness (log2 ratio) -3 -2 -1 0 1at 2857.879 kb on - strand, within RR42_RS33210at 2857.943 kb on + strand, within RR42_RS33210at 2858.089 kb on + strand, within RR42_RS33210at 2858.096 kb on - strand, within RR42_RS33210at 2858.098 kb on - strand, within RR42_RS33210at 2858.125 kb on + strand, within RR42_RS33210at 2858.126 kb on - strand, within RR42_RS33210at 2858.267 kb on - strand, within RR42_RS33210at 2858.358 kb on + strand, within RR42_RS33210at 2858.359 kb on - strand, within RR42_RS33210at 2858.359 kb on - strand, within RR42_RS33210at 2858.475 kb on - strandat 2858.475 kb on - strandat 2858.545 kb on - strandat 2858.556 kb on + strandat 2858.610 kb on - strandat 2858.642 kb on - strandat 2858.681 kb on + strandat 2858.681 kb on + strandat 2858.681 kb on + strandat 2858.682 kb on - strandat 2858.730 kb on - strandat 2858.954 kb on - strandat 2858.994 kb on - strand, within RR42_RS33215at 2859.105 kb on - strand, within RR42_RS33215at 2859.139 kb on + strand, within RR42_RS33215at 2859.139 kb on + strand, within RR42_RS33215at 2859.140 kb on - strand, within RR42_RS33215at 2859.332 kb on + strand, within RR42_RS33215at 2859.356 kb on + strand, within RR42_RS33215at 2859.365 kb on + strand, within RR42_RS33215at 2859.398 kb on + strand, within RR42_RS33215at 2859.464 kb on + strand, within RR42_RS33215at 2859.464 kb on + strand, within RR42_RS33215at 2859.464 kb on + strand, within RR42_RS33215at 2859.502 kb on - strand, within RR42_RS33215at 2859.502 kb on - strand, within RR42_RS33215at 2859.523 kb on - strand, within RR42_RS33215at 2859.530 kb on + strand, within RR42_RS33215at 2859.530 kb on + strand, within RR42_RS33215at 2859.530 kb on + strand, within RR42_RS33215at 2859.545 kb on + strand, within RR42_RS33215at 2859.545 kb on + strand, within RR42_RS33215at 2859.591 kb on + strand, within RR42_RS33215at 2859.605 kb on + strand, within RR42_RS33215at 2859.606 kb on - strand, within RR42_RS33215at 2859.606 kb on - strand, within RR42_RS33215at 2859.772 kb on + strand, within RR42_RS33215at 2859.773 kb on - strand, within RR42_RS33215at 2859.820 kb on + strand, within RR42_RS33215at 2859.851 kb on - strand, within RR42_RS33215at 2859.851 kb on - strand, within RR42_RS33215at 2859.851 kb on - strand, within RR42_RS33215at 2859.896 kb on - strand, within RR42_RS33215at 2859.906 kb on + strand, within RR42_RS33215at 2859.906 kb on + strand, within RR42_RS33215at 2859.906 kb on + strand, within RR42_RS33215at 2859.907 kb on - strand, within RR42_RS33215at 2859.911 kb on - strandat 2860.373 kb on + strandat 2860.731 kb on + strandat 2860.853 kb on + strandat 2860.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,857,879 - RR42_RS33210 0.14 -2.5
2,857,943 + RR42_RS33210 0.23 -1.9
2,858,089 + RR42_RS33210 0.42 -2.7
2,858,096 - RR42_RS33210 0.42 -1.0
2,858,098 - RR42_RS33210 0.43 -2.1
2,858,125 + RR42_RS33210 0.46 -1.7
2,858,126 - RR42_RS33210 0.46 -3.5
2,858,267 - RR42_RS33210 0.65 -1.6
2,858,358 + RR42_RS33210 0.77 -1.9
2,858,359 - RR42_RS33210 0.77 -2.1
2,858,359 - RR42_RS33210 0.77 -1.1
2,858,475 - -1.9
2,858,475 - -2.9
2,858,545 - +1.6
2,858,556 + +0.2
2,858,610 - -0.4
2,858,642 - -0.8
2,858,681 + -0.4
2,858,681 + +1.1
2,858,681 + -1.0
2,858,682 - +0.7
2,858,730 - +0.6
2,858,954 - -2.3
2,858,994 - RR42_RS33215 0.12 -0.6
2,859,105 - RR42_RS33215 0.21 -0.9
2,859,139 + RR42_RS33215 0.24 +0.0
2,859,139 + RR42_RS33215 0.24 -1.4
2,859,140 - RR42_RS33215 0.24 -1.7
2,859,332 + RR42_RS33215 0.41 -2.2
2,859,356 + RR42_RS33215 0.43 -2.2
2,859,365 + RR42_RS33215 0.43 -2.1
2,859,398 + RR42_RS33215 0.46 -1.7
2,859,464 + RR42_RS33215 0.52 -3.2
2,859,464 + RR42_RS33215 0.52 +0.3
2,859,464 + RR42_RS33215 0.52 -1.8
2,859,502 - RR42_RS33215 0.55 -1.7
2,859,502 - RR42_RS33215 0.55 -0.9
2,859,523 - RR42_RS33215 0.57 -0.9
2,859,530 + RR42_RS33215 0.58 -1.7
2,859,530 + RR42_RS33215 0.58 -1.4
2,859,530 + RR42_RS33215 0.58 -1.3
2,859,545 + RR42_RS33215 0.59 +0.7
2,859,545 + RR42_RS33215 0.59 +0.5
2,859,591 + RR42_RS33215 0.63 -1.2
2,859,605 + RR42_RS33215 0.64 +1.6
2,859,606 - RR42_RS33215 0.64 -2.8
2,859,606 - RR42_RS33215 0.64 +0.2
2,859,772 + RR42_RS33215 0.78 -1.9
2,859,773 - RR42_RS33215 0.78 -2.9
2,859,820 + RR42_RS33215 0.82 -1.1
2,859,851 - RR42_RS33215 0.85 -2.7
2,859,851 - RR42_RS33215 0.85 -1.4
2,859,851 - RR42_RS33215 0.85 -0.9
2,859,896 - RR42_RS33215 0.89 -0.9
2,859,906 + RR42_RS33215 0.90 -0.5
2,859,906 + RR42_RS33215 0.90 -1.8
2,859,906 + RR42_RS33215 0.90 -0.8
2,859,907 - RR42_RS33215 0.90 -1.9
2,859,911 - -1.6
2,860,373 + -1.2
2,860,731 + -2.6
2,860,853 + -1.9
2,860,900 - -0.7

Or see this region's nucleotide sequence