Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS33210 and RR42_RS33215 are separated by 320 nucleotides
RR42_RS33210: RR42_RS33210 - teichoic acid biosynthesis protein, at 2,857,770 to 2,858,537
_RS33210
RR42_RS33215: RR42_RS33215 - transferase, at 2,858,858 to 2,860,024
_RS33215
Position (kb)
2858
2859
2860
2861 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2857.879 kb on - strand, within RR42_RS33210 at 2857.943 kb on + strand, within RR42_RS33210 at 2858.089 kb on + strand, within RR42_RS33210 at 2858.096 kb on - strand, within RR42_RS33210 at 2858.098 kb on - strand, within RR42_RS33210 at 2858.125 kb on + strand, within RR42_RS33210 at 2858.126 kb on - strand, within RR42_RS33210 at 2858.267 kb on - strand, within RR42_RS33210 at 2858.358 kb on + strand, within RR42_RS33210 at 2858.359 kb on - strand, within RR42_RS33210 at 2858.359 kb on - strand, within RR42_RS33210 at 2858.475 kb on - strand at 2858.475 kb on - strand at 2858.545 kb on - strand at 2858.556 kb on + strand at 2858.610 kb on - strand at 2858.642 kb on - strand at 2858.681 kb on + strand at 2858.681 kb on + strand at 2858.681 kb on + strand at 2858.682 kb on - strand at 2858.730 kb on - strand at 2858.954 kb on - strand at 2858.994 kb on - strand, within RR42_RS33215 at 2859.105 kb on - strand, within RR42_RS33215 at 2859.139 kb on + strand, within RR42_RS33215 at 2859.139 kb on + strand, within RR42_RS33215 at 2859.140 kb on - strand, within RR42_RS33215 at 2859.332 kb on + strand, within RR42_RS33215 at 2859.356 kb on + strand, within RR42_RS33215 at 2859.365 kb on + strand, within RR42_RS33215 at 2859.398 kb on + strand, within RR42_RS33215 at 2859.464 kb on + strand, within RR42_RS33215 at 2859.464 kb on + strand, within RR42_RS33215 at 2859.464 kb on + strand, within RR42_RS33215 at 2859.502 kb on - strand, within RR42_RS33215 at 2859.502 kb on - strand, within RR42_RS33215 at 2859.523 kb on - strand, within RR42_RS33215 at 2859.530 kb on + strand, within RR42_RS33215 at 2859.530 kb on + strand, within RR42_RS33215 at 2859.530 kb on + strand, within RR42_RS33215 at 2859.545 kb on + strand, within RR42_RS33215 at 2859.545 kb on + strand, within RR42_RS33215 at 2859.591 kb on + strand, within RR42_RS33215 at 2859.605 kb on + strand, within RR42_RS33215 at 2859.606 kb on - strand, within RR42_RS33215 at 2859.606 kb on - strand, within RR42_RS33215 at 2859.772 kb on + strand, within RR42_RS33215 at 2859.773 kb on - strand, within RR42_RS33215 at 2859.820 kb on + strand, within RR42_RS33215 at 2859.851 kb on - strand, within RR42_RS33215 at 2859.851 kb on - strand, within RR42_RS33215 at 2859.851 kb on - strand, within RR42_RS33215 at 2859.896 kb on - strand, within RR42_RS33215 at 2859.906 kb on + strand, within RR42_RS33215 at 2859.906 kb on + strand, within RR42_RS33215 at 2859.906 kb on + strand, within RR42_RS33215 at 2859.907 kb on - strand, within RR42_RS33215 at 2859.911 kb on - strand at 2860.373 kb on + strand at 2860.731 kb on + strand at 2860.853 kb on + strand at 2860.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 2,857,879 - RR42_RS33210 0.14 -2.5 2,857,943 + RR42_RS33210 0.23 -1.9 2,858,089 + RR42_RS33210 0.42 -2.7 2,858,096 - RR42_RS33210 0.42 -1.0 2,858,098 - RR42_RS33210 0.43 -2.1 2,858,125 + RR42_RS33210 0.46 -1.7 2,858,126 - RR42_RS33210 0.46 -3.5 2,858,267 - RR42_RS33210 0.65 -1.6 2,858,358 + RR42_RS33210 0.77 -1.9 2,858,359 - RR42_RS33210 0.77 -2.1 2,858,359 - RR42_RS33210 0.77 -1.1 2,858,475 - -1.9 2,858,475 - -2.9 2,858,545 - +1.6 2,858,556 + +0.2 2,858,610 - -0.4 2,858,642 - -0.8 2,858,681 + -0.4 2,858,681 + +1.1 2,858,681 + -1.0 2,858,682 - +0.7 2,858,730 - +0.6 2,858,954 - -2.3 2,858,994 - RR42_RS33215 0.12 -0.6 2,859,105 - RR42_RS33215 0.21 -0.9 2,859,139 + RR42_RS33215 0.24 +0.0 2,859,139 + RR42_RS33215 0.24 -1.4 2,859,140 - RR42_RS33215 0.24 -1.7 2,859,332 + RR42_RS33215 0.41 -2.2 2,859,356 + RR42_RS33215 0.43 -2.2 2,859,365 + RR42_RS33215 0.43 -2.1 2,859,398 + RR42_RS33215 0.46 -1.7 2,859,464 + RR42_RS33215 0.52 -3.2 2,859,464 + RR42_RS33215 0.52 +0.3 2,859,464 + RR42_RS33215 0.52 -1.8 2,859,502 - RR42_RS33215 0.55 -1.7 2,859,502 - RR42_RS33215 0.55 -0.9 2,859,523 - RR42_RS33215 0.57 -0.9 2,859,530 + RR42_RS33215 0.58 -1.7 2,859,530 + RR42_RS33215 0.58 -1.4 2,859,530 + RR42_RS33215 0.58 -1.3 2,859,545 + RR42_RS33215 0.59 +0.7 2,859,545 + RR42_RS33215 0.59 +0.5 2,859,591 + RR42_RS33215 0.63 -1.2 2,859,605 + RR42_RS33215 0.64 +1.6 2,859,606 - RR42_RS33215 0.64 -2.8 2,859,606 - RR42_RS33215 0.64 +0.2 2,859,772 + RR42_RS33215 0.78 -1.9 2,859,773 - RR42_RS33215 0.78 -2.9 2,859,820 + RR42_RS33215 0.82 -1.1 2,859,851 - RR42_RS33215 0.85 -2.7 2,859,851 - RR42_RS33215 0.85 -1.4 2,859,851 - RR42_RS33215 0.85 -0.9 2,859,896 - RR42_RS33215 0.89 -0.9 2,859,906 + RR42_RS33215 0.90 -0.5 2,859,906 + RR42_RS33215 0.90 -1.8 2,859,906 + RR42_RS33215 0.90 -0.8 2,859,907 - RR42_RS33215 0.90 -1.9 2,859,911 - -1.6 2,860,373 + -1.2 2,860,731 + -2.6 2,860,853 + -1.9 2,860,900 - -0.7
Or see this region's nucleotide sequence