Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32600

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS32595 and RR42_RS32600 are separated by 8 nucleotidesRR42_RS32600 and RR42_RS32605 are separated by 680 nucleotides RR42_RS32595: RR42_RS32595 - cytochrome o ubiquinol oxidase subunit I, at 2,707,794 to 2,709,770 _RS32595 RR42_RS32600: RR42_RS32600 - cytochrome O ubiquinol oxidase subunit II, at 2,709,779 to 2,710,747 _RS32600 RR42_RS32605: RR42_RS32605 - sulfonate ABC transporter substrate-binding protein, at 2,711,428 to 2,712,396 _RS32605 Position (kb) 2709 2710 2711Strain fitness (log2 ratio) -2 -1 0 1 2at 2708.833 kb on + strand, within RR42_RS32595at 2708.909 kb on - strand, within RR42_RS32595at 2708.947 kb on + strand, within RR42_RS32595at 2708.947 kb on + strand, within RR42_RS32595at 2708.948 kb on - strand, within RR42_RS32595at 2709.203 kb on - strand, within RR42_RS32595at 2709.229 kb on + strand, within RR42_RS32595at 2709.475 kb on + strand, within RR42_RS32595at 2709.589 kb on + strandat 2709.590 kb on - strandat 2709.662 kb on - strandat 2709.775 kb on - strandat 2709.915 kb on + strand, within RR42_RS32600at 2709.916 kb on - strand, within RR42_RS32600at 2709.937 kb on - strand, within RR42_RS32600at 2710.200 kb on + strand, within RR42_RS32600at 2710.200 kb on + strand, within RR42_RS32600at 2710.201 kb on - strand, within RR42_RS32600at 2710.739 kb on + strandat 2711.317 kb on + strandat 2711.331 kb on - strandat 2711.382 kb on - strandat 2711.382 kb on - strandat 2711.740 kb on + strand, within RR42_RS32605at 2711.740 kb on + strand, within RR42_RS32605at 2711.740 kb on + strand, within RR42_RS32605

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,708,833 + RR42_RS32595 0.53 -1.1
2,708,909 - RR42_RS32595 0.56 -1.5
2,708,947 + RR42_RS32595 0.58 -0.4
2,708,947 + RR42_RS32595 0.58 -0.4
2,708,948 - RR42_RS32595 0.58 -0.5
2,709,203 - RR42_RS32595 0.71 +1.9
2,709,229 + RR42_RS32595 0.73 -2.3
2,709,475 + RR42_RS32595 0.85 -0.1
2,709,589 + -0.5
2,709,590 - +1.2
2,709,662 - -1.8
2,709,775 - -1.7
2,709,915 + RR42_RS32600 0.14 -1.5
2,709,916 - RR42_RS32600 0.14 -0.3
2,709,937 - RR42_RS32600 0.16 -1.6
2,710,200 + RR42_RS32600 0.43 -0.4
2,710,200 + RR42_RS32600 0.43 -1.9
2,710,201 - RR42_RS32600 0.44 -0.9
2,710,739 + -0.5
2,711,317 + +0.7
2,711,331 - +0.8
2,711,382 - +0.0
2,711,382 - -0.1
2,711,740 + RR42_RS32605 0.32 -0.3
2,711,740 + RR42_RS32605 0.32 -0.1
2,711,740 + RR42_RS32605 0.32 +1.2

Or see this region's nucleotide sequence