Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31755

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31750 and RR42_RS31755 are separated by 293 nucleotidesRR42_RS31755 and RR42_RS31760 are separated by 208 nucleotides RR42_RS31750: RR42_RS31750 - IclR family transcriptional regulator, at 2,499,279 to 2,500,046 _RS31750 RR42_RS31755: RR42_RS31755 - short-chain dehydrogenase, at 2,500,340 to 2,501,056 _RS31755 RR42_RS31760: RR42_RS31760 - IclR family transcriptional regulator, at 2,501,265 to 2,503,364 _RS31760 Position (kb) 2500 2501 2502Strain fitness (log2 ratio) -1 0 1at 2499.479 kb on - strand, within RR42_RS31750at 2499.724 kb on - strand, within RR42_RS31750at 2499.838 kb on + strand, within RR42_RS31750at 2499.838 kb on + strand, within RR42_RS31750at 2500.012 kb on + strandat 2500.078 kb on - strandat 2500.099 kb on - strandat 2500.128 kb on + strandat 2500.129 kb on - strandat 2500.129 kb on - strandat 2500.129 kb on - strandat 2500.129 kb on - strandat 2500.195 kb on + strandat 2500.195 kb on + strandat 2500.195 kb on + strandat 2500.195 kb on + strandat 2500.195 kb on + strandat 2500.195 kb on + strandat 2500.196 kb on - strandat 2500.196 kb on - strandat 2500.196 kb on - strandat 2500.229 kb on + strandat 2500.294 kb on + strandat 2500.295 kb on - strandat 2500.296 kb on + strandat 2500.296 kb on + strandat 2500.296 kb on + strandat 2501.087 kb on - strandat 2501.095 kb on + strandat 2501.187 kb on - strandat 2501.225 kb on - strandat 2501.719 kb on + strand, within RR42_RS31760at 2501.719 kb on + strand, within RR42_RS31760at 2501.756 kb on + strand, within RR42_RS31760at 2501.809 kb on + strand, within RR42_RS31760at 2501.817 kb on + strand, within RR42_RS31760at 2501.817 kb on + strand, within RR42_RS31760at 2501.818 kb on - strand, within RR42_RS31760at 2501.926 kb on - strand, within RR42_RS31760at 2501.926 kb on - strand, within RR42_RS31760at 2501.926 kb on - strand, within RR42_RS31760at 2501.932 kb on - strand, within RR42_RS31760at 2501.932 kb on - strand, within RR42_RS31760at 2501.932 kb on - strand, within RR42_RS31760at 2501.946 kb on + strand, within RR42_RS31760at 2501.949 kb on - strand, within RR42_RS31760at 2502.024 kb on + strand, within RR42_RS31760at 2502.025 kb on - strand, within RR42_RS31760

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,499,479 - RR42_RS31750 0.26 +1.4
2,499,724 - RR42_RS31750 0.58 +0.0
2,499,838 + RR42_RS31750 0.73 -0.2
2,499,838 + RR42_RS31750 0.73 -0.5
2,500,012 + -1.1
2,500,078 - +1.2
2,500,099 - +0.5
2,500,128 + +0.0
2,500,129 - -0.4
2,500,129 - -0.3
2,500,129 - -1.1
2,500,129 - +0.1
2,500,195 + -0.4
2,500,195 + +0.3
2,500,195 + +0.1
2,500,195 + +0.7
2,500,195 + +0.5
2,500,195 + -0.2
2,500,196 - -1.2
2,500,196 - -0.0
2,500,196 - -0.1
2,500,229 + -0.0
2,500,294 + -0.9
2,500,295 - -0.3
2,500,296 + -0.3
2,500,296 + +0.6
2,500,296 + +0.3
2,501,087 - +1.3
2,501,095 + -0.1
2,501,187 - -0.0
2,501,225 - -0.6
2,501,719 + RR42_RS31760 0.22 -1.5
2,501,719 + RR42_RS31760 0.22 -0.5
2,501,756 + RR42_RS31760 0.23 +0.9
2,501,809 + RR42_RS31760 0.26 -0.8
2,501,817 + RR42_RS31760 0.26 -0.6
2,501,817 + RR42_RS31760 0.26 +0.3
2,501,818 - RR42_RS31760 0.26 +0.8
2,501,926 - RR42_RS31760 0.31 -0.7
2,501,926 - RR42_RS31760 0.31 -1.1
2,501,926 - RR42_RS31760 0.31 -0.5
2,501,932 - RR42_RS31760 0.32 -0.5
2,501,932 - RR42_RS31760 0.32 +0.0
2,501,932 - RR42_RS31760 0.32 -0.4
2,501,946 + RR42_RS31760 0.32 +0.3
2,501,949 - RR42_RS31760 0.33 +0.3
2,502,024 + RR42_RS31760 0.36 -0.2
2,502,025 - RR42_RS31760 0.36 +0.6

Or see this region's nucleotide sequence