Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28770

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28760 and RR42_RS28765 are separated by 350 nucleotidesRR42_RS28765 and RR42_RS28770 are separated by 195 nucleotidesRR42_RS28770 and RR42_RS28775 are separated by 220 nucleotidesRR42_RS28775 and RR42_RS28780 are separated by 26 nucleotides RR42_RS28760: RR42_RS28760 - membrane protein, at 1,801,863 to 1,803,407 _RS28760 RR42_RS28765: RR42_RS28765 - DNA-binding protein, at 1,803,758 to 1,804,189 _RS28765 RR42_RS28770: RR42_RS28770 - ubiquinone biosynthesis protein, at 1,804,385 to 1,805,122 _RS28770 RR42_RS28775: RR42_RS28775 - hypothetical protein, at 1,805,343 to 1,806,008 _RS28775 RR42_RS28780: RR42_RS28780 - molecular chaperone DnaK, at 1,806,035 to 1,808,845 _RS28780 Position (kb) 1804 1805 1806Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1803.429 kb on + strandat 1803.429 kb on + strandat 1803.430 kb on - strandat 1803.432 kb on + strandat 1803.473 kb on + strandat 1803.473 kb on + strandat 1803.735 kb on + strandat 1803.760 kb on - strandat 1803.760 kb on - strandat 1803.853 kb on - strand, within RR42_RS28765at 1804.163 kb on + strandat 1804.164 kb on - strandat 1804.183 kb on + strandat 1804.183 kb on + strandat 1804.195 kb on - strandat 1804.256 kb on + strandat 1804.256 kb on + strandat 1804.256 kb on + strandat 1804.256 kb on + strandat 1804.257 kb on - strandat 1804.352 kb on - strandat 1804.386 kb on + strandat 1804.387 kb on - strandat 1804.435 kb on - strandat 1804.503 kb on + strand, within RR42_RS28770at 1804.503 kb on + strand, within RR42_RS28770at 1804.504 kb on - strand, within RR42_RS28770at 1804.609 kb on + strand, within RR42_RS28770at 1804.701 kb on + strand, within RR42_RS28770at 1804.752 kb on - strand, within RR42_RS28770at 1804.761 kb on + strand, within RR42_RS28770at 1804.824 kb on + strand, within RR42_RS28770at 1804.932 kb on + strand, within RR42_RS28770at 1804.932 kb on + strand, within RR42_RS28770at 1804.933 kb on - strand, within RR42_RS28770at 1804.933 kb on - strand, within RR42_RS28770at 1804.974 kb on + strand, within RR42_RS28770at 1804.975 kb on - strand, within RR42_RS28770at 1804.975 kb on - strand, within RR42_RS28770at 1805.092 kb on + strandat 1805.094 kb on + strandat 1805.095 kb on - strandat 1805.114 kb on + strandat 1805.114 kb on + strandat 1805.114 kb on + strandat 1805.114 kb on + strandat 1805.115 kb on - strandat 1805.115 kb on - strandat 1805.115 kb on - strandat 1805.115 kb on - strandat 1805.115 kb on - strandat 1805.265 kb on - strandat 1805.285 kb on + strandat 1805.285 kb on + strandat 1805.286 kb on - strandat 1805.286 kb on - strandat 1805.286 kb on - strandat 1805.291 kb on + strandat 1805.291 kb on + strandat 1805.292 kb on - strandat 1805.332 kb on - strandat 1805.422 kb on + strand, within RR42_RS28775at 1805.422 kb on + strand, within RR42_RS28775at 1805.422 kb on + strand, within RR42_RS28775at 1805.422 kb on + strand, within RR42_RS28775at 1805.423 kb on - strand, within RR42_RS28775at 1805.472 kb on + strand, within RR42_RS28775at 1805.473 kb on - strand, within RR42_RS28775at 1805.473 kb on - strand, within RR42_RS28775at 1805.473 kb on - strand, within RR42_RS28775

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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1,803,429 + +1.1
1,803,429 + +1.4
1,803,430 - +0.7
1,803,432 + -0.0
1,803,473 + +0.5
1,803,473 + -0.8
1,803,735 + -0.4
1,803,760 - -1.2
1,803,760 - +0.7
1,803,853 - RR42_RS28765 0.22 +0.3
1,804,163 + +0.7
1,804,164 - +0.0
1,804,183 + -0.4
1,804,183 + +0.3
1,804,195 - -0.6
1,804,256 + -0.6
1,804,256 + +1.8
1,804,256 + -0.1
1,804,256 + -0.3
1,804,257 - -0.9
1,804,352 - -0.6
1,804,386 + -0.2
1,804,387 - +0.2
1,804,435 - +0.3
1,804,503 + RR42_RS28770 0.16 -0.2
1,804,503 + RR42_RS28770 0.16 -2.1
1,804,504 - RR42_RS28770 0.16 -0.7
1,804,609 + RR42_RS28770 0.30 -0.9
1,804,701 + RR42_RS28770 0.43 -2.0
1,804,752 - RR42_RS28770 0.50 -1.1
1,804,761 + RR42_RS28770 0.51 +0.1
1,804,824 + RR42_RS28770 0.59 +0.3
1,804,932 + RR42_RS28770 0.74 -0.3
1,804,932 + RR42_RS28770 0.74 -1.6
1,804,933 - RR42_RS28770 0.74 -0.6
1,804,933 - RR42_RS28770 0.74 -1.3
1,804,974 + RR42_RS28770 0.80 -0.3
1,804,975 - RR42_RS28770 0.80 -2.3
1,804,975 - RR42_RS28770 0.80 -2.2
1,805,092 + -1.9
1,805,094 + -0.7
1,805,095 - +1.2
1,805,114 + +0.0
1,805,114 + -3.9
1,805,114 + +0.0
1,805,114 + +0.1
1,805,115 - +0.1
1,805,115 - -0.3
1,805,115 - -0.0
1,805,115 - -0.7
1,805,115 - +1.7
1,805,265 - +0.5
1,805,285 + -0.3
1,805,285 + +0.9
1,805,286 - +0.6
1,805,286 - +2.5
1,805,286 - -0.3
1,805,291 + +0.1
1,805,291 + +0.8
1,805,292 - -0.3
1,805,332 - -0.5
1,805,422 + RR42_RS28775 0.12 +0.2
1,805,422 + RR42_RS28775 0.12 -0.3
1,805,422 + RR42_RS28775 0.12 +0.2
1,805,422 + RR42_RS28775 0.12 -0.4
1,805,423 - RR42_RS28775 0.12 +0.1
1,805,472 + RR42_RS28775 0.19 -0.2
1,805,473 - RR42_RS28775 0.20 -0.1
1,805,473 - RR42_RS28775 0.20 -1.5
1,805,473 - RR42_RS28775 0.20 +0.4

Or see this region's nucleotide sequence