Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28760 and RR42_RS28765 are separated by 350 nucleotides RR42_RS28765 and RR42_RS28770 are separated by 195 nucleotides RR42_RS28770 and RR42_RS28775 are separated by 220 nucleotides RR42_RS28775 and RR42_RS28780 are separated by 26 nucleotides
RR42_RS28760: RR42_RS28760 - membrane protein, at 1,801,863 to 1,803,407
_RS28760
RR42_RS28765: RR42_RS28765 - DNA-binding protein, at 1,803,758 to 1,804,189
_RS28765
RR42_RS28770: RR42_RS28770 - ubiquinone biosynthesis protein, at 1,804,385 to 1,805,122
_RS28770
RR42_RS28775: RR42_RS28775 - hypothetical protein, at 1,805,343 to 1,806,008
_RS28775
RR42_RS28780: RR42_RS28780 - molecular chaperone DnaK, at 1,806,035 to 1,808,845
_RS28780
Position (kb)
1804
1805
1806 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1803.429 kb on + strand at 1803.429 kb on + strand at 1803.430 kb on - strand at 1803.432 kb on + strand at 1803.473 kb on + strand at 1803.473 kb on + strand at 1803.735 kb on + strand at 1803.760 kb on - strand at 1803.760 kb on - strand at 1803.853 kb on - strand, within RR42_RS28765 at 1804.163 kb on + strand at 1804.164 kb on - strand at 1804.183 kb on + strand at 1804.183 kb on + strand at 1804.195 kb on - strand at 1804.256 kb on + strand at 1804.256 kb on + strand at 1804.256 kb on + strand at 1804.256 kb on + strand at 1804.257 kb on - strand at 1804.352 kb on - strand at 1804.386 kb on + strand at 1804.387 kb on - strand at 1804.435 kb on - strand at 1804.503 kb on + strand, within RR42_RS28770 at 1804.503 kb on + strand, within RR42_RS28770 at 1804.504 kb on - strand, within RR42_RS28770 at 1804.609 kb on + strand, within RR42_RS28770 at 1804.701 kb on + strand, within RR42_RS28770 at 1804.752 kb on - strand, within RR42_RS28770 at 1804.761 kb on + strand, within RR42_RS28770 at 1804.824 kb on + strand, within RR42_RS28770 at 1804.932 kb on + strand, within RR42_RS28770 at 1804.932 kb on + strand, within RR42_RS28770 at 1804.933 kb on - strand, within RR42_RS28770 at 1804.933 kb on - strand, within RR42_RS28770 at 1804.974 kb on + strand, within RR42_RS28770 at 1804.975 kb on - strand, within RR42_RS28770 at 1804.975 kb on - strand, within RR42_RS28770 at 1805.092 kb on + strand at 1805.094 kb on + strand at 1805.095 kb on - strand at 1805.114 kb on + strand at 1805.114 kb on + strand at 1805.114 kb on + strand at 1805.114 kb on + strand at 1805.115 kb on - strand at 1805.115 kb on - strand at 1805.115 kb on - strand at 1805.115 kb on - strand at 1805.115 kb on - strand at 1805.265 kb on - strand at 1805.285 kb on + strand at 1805.285 kb on + strand at 1805.286 kb on - strand at 1805.286 kb on - strand at 1805.286 kb on - strand at 1805.291 kb on + strand at 1805.291 kb on + strand at 1805.292 kb on - strand at 1805.332 kb on - strand at 1805.422 kb on + strand, within RR42_RS28775 at 1805.422 kb on + strand, within RR42_RS28775 at 1805.422 kb on + strand, within RR42_RS28775 at 1805.422 kb on + strand, within RR42_RS28775 at 1805.423 kb on - strand, within RR42_RS28775 at 1805.472 kb on + strand, within RR42_RS28775 at 1805.473 kb on - strand, within RR42_RS28775 at 1805.473 kb on - strand, within RR42_RS28775 at 1805.473 kb on - strand, within RR42_RS28775
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 1,803,429 + +1.1 1,803,429 + +1.4 1,803,430 - +0.7 1,803,432 + -0.0 1,803,473 + +0.5 1,803,473 + -0.8 1,803,735 + -0.4 1,803,760 - -1.2 1,803,760 - +0.7 1,803,853 - RR42_RS28765 0.22 +0.3 1,804,163 + +0.7 1,804,164 - +0.0 1,804,183 + -0.4 1,804,183 + +0.3 1,804,195 - -0.6 1,804,256 + -0.6 1,804,256 + +1.8 1,804,256 + -0.1 1,804,256 + -0.3 1,804,257 - -0.9 1,804,352 - -0.6 1,804,386 + -0.2 1,804,387 - +0.2 1,804,435 - +0.3 1,804,503 + RR42_RS28770 0.16 -0.2 1,804,503 + RR42_RS28770 0.16 -2.1 1,804,504 - RR42_RS28770 0.16 -0.7 1,804,609 + RR42_RS28770 0.30 -0.9 1,804,701 + RR42_RS28770 0.43 -2.0 1,804,752 - RR42_RS28770 0.50 -1.1 1,804,761 + RR42_RS28770 0.51 +0.1 1,804,824 + RR42_RS28770 0.59 +0.3 1,804,932 + RR42_RS28770 0.74 -0.3 1,804,932 + RR42_RS28770 0.74 -1.6 1,804,933 - RR42_RS28770 0.74 -0.6 1,804,933 - RR42_RS28770 0.74 -1.3 1,804,974 + RR42_RS28770 0.80 -0.3 1,804,975 - RR42_RS28770 0.80 -2.3 1,804,975 - RR42_RS28770 0.80 -2.2 1,805,092 + -1.9 1,805,094 + -0.7 1,805,095 - +1.2 1,805,114 + +0.0 1,805,114 + -3.9 1,805,114 + +0.0 1,805,114 + +0.1 1,805,115 - +0.1 1,805,115 - -0.3 1,805,115 - -0.0 1,805,115 - -0.7 1,805,115 - +1.7 1,805,265 - +0.5 1,805,285 + -0.3 1,805,285 + +0.9 1,805,286 - +0.6 1,805,286 - +2.5 1,805,286 - -0.3 1,805,291 + +0.1 1,805,291 + +0.8 1,805,292 - -0.3 1,805,332 - -0.5 1,805,422 + RR42_RS28775 0.12 +0.2 1,805,422 + RR42_RS28775 0.12 -0.3 1,805,422 + RR42_RS28775 0.12 +0.2 1,805,422 + RR42_RS28775 0.12 -0.4 1,805,423 - RR42_RS28775 0.12 +0.1 1,805,472 + RR42_RS28775 0.19 -0.2 1,805,473 - RR42_RS28775 0.20 -0.1 1,805,473 - RR42_RS28775 0.20 -1.5 1,805,473 - RR42_RS28775 0.20 +0.4
Or see this region's nucleotide sequence