Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28720

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28715 and RR42_RS28720 are separated by 140 nucleotidesRR42_RS28720 and RR42_RS28725 are separated by 285 nucleotides RR42_RS28715: RR42_RS28715 - aldo/keto reductase, at 1,794,013 to 1,794,948 _RS28715 RR42_RS28720: RR42_RS28720 - hypothetical protein, at 1,795,089 to 1,795,553 _RS28720 RR42_RS28725: RR42_RS28725 - ABC transporter permease, at 1,795,839 to 1,796,705 _RS28725 Position (kb) 1795 1796Strain fitness (log2 ratio) -2 -1 0 1at 1794.338 kb on + strand, within RR42_RS28715at 1794.506 kb on - strand, within RR42_RS28715at 1794.506 kb on - strand, within RR42_RS28715at 1794.526 kb on - strand, within RR42_RS28715at 1794.586 kb on + strand, within RR42_RS28715at 1794.587 kb on - strand, within RR42_RS28715at 1794.665 kb on + strand, within RR42_RS28715at 1794.666 kb on - strand, within RR42_RS28715at 1794.666 kb on - strand, within RR42_RS28715at 1794.666 kb on - strand, within RR42_RS28715at 1794.777 kb on + strand, within RR42_RS28715at 1794.778 kb on - strand, within RR42_RS28715at 1794.778 kb on - strand, within RR42_RS28715at 1794.891 kb on + strandat 1794.891 kb on + strandat 1794.892 kb on - strandat 1795.001 kb on + strandat 1795.002 kb on - strandat 1795.036 kb on + strandat 1795.061 kb on + strandat 1795.061 kb on + strandat 1795.061 kb on + strandat 1795.062 kb on - strandat 1795.073 kb on + strandat 1795.074 kb on - strandat 1795.116 kb on + strandat 1795.259 kb on + strand, within RR42_RS28720at 1795.353 kb on - strand, within RR42_RS28720at 1795.491 kb on + strand, within RR42_RS28720at 1795.531 kb on - strandat 1795.531 kb on - strandat 1795.881 kb on + strandat 1795.882 kb on - strandat 1795.882 kb on - strandat 1795.882 kb on - strandat 1795.909 kb on + strandat 1796.041 kb on + strand, within RR42_RS28725at 1796.175 kb on + strand, within RR42_RS28725at 1796.175 kb on + strand, within RR42_RS28725at 1796.175 kb on + strand, within RR42_RS28725at 1796.176 kb on - strand, within RR42_RS28725at 1796.176 kb on - strand, within RR42_RS28725at 1796.176 kb on - strand, within RR42_RS28725at 1796.408 kb on - strand, within RR42_RS28725at 1796.505 kb on + strand, within RR42_RS28725at 1796.505 kb on + strand, within RR42_RS28725at 1796.505 kb on + strand, within RR42_RS28725at 1796.505 kb on + strand, within RR42_RS28725at 1796.506 kb on - strand, within RR42_RS28725at 1796.506 kb on - strand, within RR42_RS28725at 1796.506 kb on - strand, within RR42_RS28725at 1796.506 kb on - strand, within RR42_RS28725at 1796.506 kb on - strand, within RR42_RS28725at 1796.514 kb on + strand, within RR42_RS28725at 1796.514 kb on + strand, within RR42_RS28725at 1796.514 kb on + strand, within RR42_RS28725at 1796.515 kb on - strand, within RR42_RS28725at 1796.515 kb on - strand, within RR42_RS28725at 1796.515 kb on - strand, within RR42_RS28725

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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1,794,338 + RR42_RS28715 0.35 +0.2
1,794,506 - RR42_RS28715 0.53 +0.0
1,794,506 - RR42_RS28715 0.53 +0.6
1,794,526 - RR42_RS28715 0.55 -0.4
1,794,586 + RR42_RS28715 0.61 +0.7
1,794,587 - RR42_RS28715 0.61 -1.1
1,794,665 + RR42_RS28715 0.70 -1.2
1,794,666 - RR42_RS28715 0.70 -1.3
1,794,666 - RR42_RS28715 0.70 -0.1
1,794,666 - RR42_RS28715 0.70 -2.3
1,794,777 + RR42_RS28715 0.82 -1.1
1,794,778 - RR42_RS28715 0.82 -0.6
1,794,778 - RR42_RS28715 0.82 +1.2
1,794,891 + -0.2
1,794,891 + +0.7
1,794,892 - +0.2
1,795,001 + +0.2
1,795,002 - -0.1
1,795,036 + +1.5
1,795,061 + +0.1
1,795,061 + -0.5
1,795,061 + -0.5
1,795,062 - -0.3
1,795,073 + +0.4
1,795,074 - -0.8
1,795,116 + +1.1
1,795,259 + RR42_RS28720 0.37 +0.7
1,795,353 - RR42_RS28720 0.57 -0.5
1,795,491 + RR42_RS28720 0.86 -1.3
1,795,531 - -0.7
1,795,531 - -1.9
1,795,881 + +1.1
1,795,882 - -1.3
1,795,882 - -0.6
1,795,882 - -0.6
1,795,909 + -0.6
1,796,041 + RR42_RS28725 0.23 +0.1
1,796,175 + RR42_RS28725 0.39 +0.8
1,796,175 + RR42_RS28725 0.39 -1.0
1,796,175 + RR42_RS28725 0.39 -1.1
1,796,176 - RR42_RS28725 0.39 -0.3
1,796,176 - RR42_RS28725 0.39 +0.4
1,796,176 - RR42_RS28725 0.39 -0.3
1,796,408 - RR42_RS28725 0.66 +0.3
1,796,505 + RR42_RS28725 0.77 -1.0
1,796,505 + RR42_RS28725 0.77 -1.2
1,796,505 + RR42_RS28725 0.77 +0.1
1,796,505 + RR42_RS28725 0.77 -1.1
1,796,506 - RR42_RS28725 0.77 +1.0
1,796,506 - RR42_RS28725 0.77 -1.0
1,796,506 - RR42_RS28725 0.77 +1.3
1,796,506 - RR42_RS28725 0.77 -0.3
1,796,506 - RR42_RS28725 0.77 +0.3
1,796,514 + RR42_RS28725 0.78 -0.5
1,796,514 + RR42_RS28725 0.78 -0.2
1,796,514 + RR42_RS28725 0.78 -0.3
1,796,515 - RR42_RS28725 0.78 -0.6
1,796,515 - RR42_RS28725 0.78 +0.2
1,796,515 - RR42_RS28725 0.78 +1.0

Or see this region's nucleotide sequence