Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28715 and RR42_RS28720 are separated by 140 nucleotides RR42_RS28720 and RR42_RS28725 are separated by 285 nucleotides
RR42_RS28715: RR42_RS28715 - aldo/keto reductase, at 1,794,013 to 1,794,948
_RS28715
RR42_RS28720: RR42_RS28720 - hypothetical protein, at 1,795,089 to 1,795,553
_RS28720
RR42_RS28725: RR42_RS28725 - ABC transporter permease, at 1,795,839 to 1,796,705
_RS28725
Position (kb)
1795
1796 Strain fitness (log2 ratio)
-2
-1
0
1 at 1794.338 kb on + strand, within RR42_RS28715 at 1794.506 kb on - strand, within RR42_RS28715 at 1794.506 kb on - strand, within RR42_RS28715 at 1794.526 kb on - strand, within RR42_RS28715 at 1794.586 kb on + strand, within RR42_RS28715 at 1794.587 kb on - strand, within RR42_RS28715 at 1794.665 kb on + strand, within RR42_RS28715 at 1794.666 kb on - strand, within RR42_RS28715 at 1794.666 kb on - strand, within RR42_RS28715 at 1794.666 kb on - strand, within RR42_RS28715 at 1794.777 kb on + strand, within RR42_RS28715 at 1794.778 kb on - strand, within RR42_RS28715 at 1794.778 kb on - strand, within RR42_RS28715 at 1794.891 kb on + strand at 1794.891 kb on + strand at 1794.892 kb on - strand at 1795.001 kb on + strand at 1795.002 kb on - strand at 1795.036 kb on + strand at 1795.061 kb on + strand at 1795.061 kb on + strand at 1795.061 kb on + strand at 1795.062 kb on - strand at 1795.073 kb on + strand at 1795.074 kb on - strand at 1795.116 kb on + strand at 1795.259 kb on + strand, within RR42_RS28720 at 1795.353 kb on - strand, within RR42_RS28720 at 1795.491 kb on + strand, within RR42_RS28720 at 1795.531 kb on - strand at 1795.531 kb on - strand at 1795.881 kb on + strand at 1795.882 kb on - strand at 1795.882 kb on - strand at 1795.882 kb on - strand at 1795.909 kb on + strand at 1796.041 kb on + strand, within RR42_RS28725 at 1796.175 kb on + strand, within RR42_RS28725 at 1796.175 kb on + strand, within RR42_RS28725 at 1796.175 kb on + strand, within RR42_RS28725 at 1796.176 kb on - strand, within RR42_RS28725 at 1796.176 kb on - strand, within RR42_RS28725 at 1796.176 kb on - strand, within RR42_RS28725 at 1796.408 kb on - strand, within RR42_RS28725 at 1796.505 kb on + strand, within RR42_RS28725 at 1796.505 kb on + strand, within RR42_RS28725 at 1796.505 kb on + strand, within RR42_RS28725 at 1796.505 kb on + strand, within RR42_RS28725 at 1796.506 kb on - strand, within RR42_RS28725 at 1796.506 kb on - strand, within RR42_RS28725 at 1796.506 kb on - strand, within RR42_RS28725 at 1796.506 kb on - strand, within RR42_RS28725 at 1796.506 kb on - strand, within RR42_RS28725 at 1796.514 kb on + strand, within RR42_RS28725 at 1796.514 kb on + strand, within RR42_RS28725 at 1796.514 kb on + strand, within RR42_RS28725 at 1796.515 kb on - strand, within RR42_RS28725 at 1796.515 kb on - strand, within RR42_RS28725 at 1796.515 kb on - strand, within RR42_RS28725
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 1,794,338 + RR42_RS28715 0.35 +0.2 1,794,506 - RR42_RS28715 0.53 +0.0 1,794,506 - RR42_RS28715 0.53 +0.6 1,794,526 - RR42_RS28715 0.55 -0.4 1,794,586 + RR42_RS28715 0.61 +0.7 1,794,587 - RR42_RS28715 0.61 -1.1 1,794,665 + RR42_RS28715 0.70 -1.2 1,794,666 - RR42_RS28715 0.70 -1.3 1,794,666 - RR42_RS28715 0.70 -0.1 1,794,666 - RR42_RS28715 0.70 -2.3 1,794,777 + RR42_RS28715 0.82 -1.1 1,794,778 - RR42_RS28715 0.82 -0.6 1,794,778 - RR42_RS28715 0.82 +1.2 1,794,891 + -0.2 1,794,891 + +0.7 1,794,892 - +0.2 1,795,001 + +0.2 1,795,002 - -0.1 1,795,036 + +1.5 1,795,061 + +0.1 1,795,061 + -0.5 1,795,061 + -0.5 1,795,062 - -0.3 1,795,073 + +0.4 1,795,074 - -0.8 1,795,116 + +1.1 1,795,259 + RR42_RS28720 0.37 +0.7 1,795,353 - RR42_RS28720 0.57 -0.5 1,795,491 + RR42_RS28720 0.86 -1.3 1,795,531 - -0.7 1,795,531 - -1.9 1,795,881 + +1.1 1,795,882 - -1.3 1,795,882 - -0.6 1,795,882 - -0.6 1,795,909 + -0.6 1,796,041 + RR42_RS28725 0.23 +0.1 1,796,175 + RR42_RS28725 0.39 +0.8 1,796,175 + RR42_RS28725 0.39 -1.0 1,796,175 + RR42_RS28725 0.39 -1.1 1,796,176 - RR42_RS28725 0.39 -0.3 1,796,176 - RR42_RS28725 0.39 +0.4 1,796,176 - RR42_RS28725 0.39 -0.3 1,796,408 - RR42_RS28725 0.66 +0.3 1,796,505 + RR42_RS28725 0.77 -1.0 1,796,505 + RR42_RS28725 0.77 -1.2 1,796,505 + RR42_RS28725 0.77 +0.1 1,796,505 + RR42_RS28725 0.77 -1.1 1,796,506 - RR42_RS28725 0.77 +1.0 1,796,506 - RR42_RS28725 0.77 -1.0 1,796,506 - RR42_RS28725 0.77 +1.3 1,796,506 - RR42_RS28725 0.77 -0.3 1,796,506 - RR42_RS28725 0.77 +0.3 1,796,514 + RR42_RS28725 0.78 -0.5 1,796,514 + RR42_RS28725 0.78 -0.2 1,796,514 + RR42_RS28725 0.78 -0.3 1,796,515 - RR42_RS28725 0.78 -0.6 1,796,515 - RR42_RS28725 0.78 +0.2 1,796,515 - RR42_RS28725 0.78 +1.0
Or see this region's nucleotide sequence