Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27880

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27875 and RR42_RS27880 are separated by 79 nucleotidesRR42_RS27880 and RR42_RS27885 are separated by 32 nucleotidesRR42_RS27885 and RR42_RS27890 are separated by 52 nucleotides RR42_RS27875: RR42_RS27875 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 1,616,279 to 1,618,063 _RS27875 RR42_RS27880: RR42_RS27880 - 3-(2,3-dihydroxyphenyl)propionate dioxygenase, at 1,618,143 to 1,619,093 _RS27880 RR42_RS27885: RR42_RS27885 - 2-keto-4-pentenoate hydratase, at 1,619,126 to 1,619,902 _RS27885 RR42_RS27890: RR42_RS27890 - hypothetical protein, at 1,619,955 to 1,620,935 _RS27890 Position (kb) 1618 1619 1620Strain fitness (log2 ratio) -2 -1 0 1at 1617.210 kb on - strand, within RR42_RS27875at 1617.210 kb on - strand, within RR42_RS27875at 1617.299 kb on + strand, within RR42_RS27875at 1617.300 kb on - strand, within RR42_RS27875at 1617.446 kb on + strand, within RR42_RS27875at 1617.446 kb on + strand, within RR42_RS27875at 1617.706 kb on + strand, within RR42_RS27875at 1617.707 kb on - strand, within RR42_RS27875at 1617.980 kb on - strandat 1618.094 kb on - strandat 1619.002 kb on - strandat 1619.507 kb on + strand, within RR42_RS27885at 1619.557 kb on + strand, within RR42_RS27885at 1619.565 kb on - strand, within RR42_RS27885

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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1,617,210 - RR42_RS27875 0.52 +1.3
1,617,210 - RR42_RS27875 0.52 -0.1
1,617,299 + RR42_RS27875 0.57 -0.4
1,617,300 - RR42_RS27875 0.57 +0.5
1,617,446 + RR42_RS27875 0.65 -0.6
1,617,446 + RR42_RS27875 0.65 -0.3
1,617,706 + RR42_RS27875 0.80 +0.3
1,617,707 - RR42_RS27875 0.80 -1.2
1,617,980 - -0.1
1,618,094 - -2.1
1,619,002 - -1.6
1,619,507 + RR42_RS27885 0.49 +1.2
1,619,557 + RR42_RS27885 0.55 +1.7
1,619,565 - RR42_RS27885 0.56 -0.3

Or see this region's nucleotide sequence