Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27870

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27865 and RR42_RS27870 are separated by 248 nucleotidesRR42_RS27870 and RR42_RS27875 are separated by 33 nucleotides RR42_RS27865: RR42_RS27865 - transcriptional regulator, at 1,614,291 to 1,615,112 _RS27865 RR42_RS27870: RR42_RS27870 - 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase, at 1,615,361 to 1,616,245 _RS27870 RR42_RS27875: RR42_RS27875 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 1,616,279 to 1,618,063 _RS27875 Position (kb) 1615 1616 1617Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1614.412 kb on + strand, within RR42_RS27865at 1614.413 kb on - strand, within RR42_RS27865at 1614.413 kb on - strand, within RR42_RS27865at 1614.641 kb on + strand, within RR42_RS27865at 1614.655 kb on + strand, within RR42_RS27865at 1614.656 kb on - strand, within RR42_RS27865at 1614.796 kb on - strand, within RR42_RS27865at 1614.901 kb on + strand, within RR42_RS27865at 1614.902 kb on - strand, within RR42_RS27865at 1614.902 kb on - strand, within RR42_RS27865at 1615.115 kb on + strandat 1615.115 kb on + strandat 1615.116 kb on - strandat 1615.120 kb on - strandat 1615.125 kb on - strandat 1615.125 kb on - strandat 1615.158 kb on - strandat 1615.235 kb on + strandat 1615.247 kb on + strandat 1615.256 kb on + strandat 1615.256 kb on + strandat 1615.445 kb on + strandat 1615.517 kb on + strand, within RR42_RS27870at 1615.518 kb on - strand, within RR42_RS27870at 1615.931 kb on + strand, within RR42_RS27870at 1615.932 kb on - strand, within RR42_RS27870at 1615.932 kb on - strand, within RR42_RS27870at 1616.024 kb on + strand, within RR42_RS27870at 1616.025 kb on - strand, within RR42_RS27870at 1616.386 kb on - strandat 1616.560 kb on + strand, within RR42_RS27875at 1616.629 kb on + strand, within RR42_RS27875at 1616.792 kb on + strand, within RR42_RS27875at 1616.920 kb on + strand, within RR42_RS27875at 1616.920 kb on + strand, within RR42_RS27875at 1616.920 kb on + strand, within RR42_RS27875at 1616.921 kb on - strand, within RR42_RS27875at 1616.921 kb on - strand, within RR42_RS27875at 1616.921 kb on - strand, within RR42_RS27875at 1616.924 kb on + strand, within RR42_RS27875at 1616.925 kb on - strand, within RR42_RS27875at 1616.925 kb on - strand, within RR42_RS27875at 1616.951 kb on + strand, within RR42_RS27875at 1616.951 kb on + strand, within RR42_RS27875at 1616.952 kb on - strand, within RR42_RS27875at 1617.092 kb on + strand, within RR42_RS27875at 1617.093 kb on - strand, within RR42_RS27875at 1617.210 kb on - strand, within RR42_RS27875at 1617.210 kb on - strand, within RR42_RS27875

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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1,614,412 + RR42_RS27865 0.15 -0.3
1,614,413 - RR42_RS27865 0.15 -0.2
1,614,413 - RR42_RS27865 0.15 +0.6
1,614,641 + RR42_RS27865 0.43 +0.0
1,614,655 + RR42_RS27865 0.44 -0.9
1,614,656 - RR42_RS27865 0.44 -0.7
1,614,796 - RR42_RS27865 0.61 -1.1
1,614,901 + RR42_RS27865 0.74 +0.5
1,614,902 - RR42_RS27865 0.74 -0.2
1,614,902 - RR42_RS27865 0.74 -0.3
1,615,115 + +0.1
1,615,115 + +0.7
1,615,116 - +0.9
1,615,120 - +0.0
1,615,125 - -0.8
1,615,125 - +1.0
1,615,158 - +0.6
1,615,235 + -0.2
1,615,247 + +0.1
1,615,256 + -0.6
1,615,256 + -2.1
1,615,445 + -0.1
1,615,517 + RR42_RS27870 0.18 -3.2
1,615,518 - RR42_RS27870 0.18 +1.3
1,615,931 + RR42_RS27870 0.64 +0.7
1,615,932 - RR42_RS27870 0.65 +0.8
1,615,932 - RR42_RS27870 0.65 +0.6
1,616,024 + RR42_RS27870 0.75 -0.1
1,616,025 - RR42_RS27870 0.75 -0.7
1,616,386 - -0.1
1,616,560 + RR42_RS27875 0.16 +0.3
1,616,629 + RR42_RS27875 0.20 -0.8
1,616,792 + RR42_RS27875 0.29 -1.7
1,616,920 + RR42_RS27875 0.36 +1.0
1,616,920 + RR42_RS27875 0.36 +1.1
1,616,920 + RR42_RS27875 0.36 +1.2
1,616,921 - RR42_RS27875 0.36 +0.7
1,616,921 - RR42_RS27875 0.36 -1.0
1,616,921 - RR42_RS27875 0.36 -1.6
1,616,924 + RR42_RS27875 0.36 +0.4
1,616,925 - RR42_RS27875 0.36 +0.7
1,616,925 - RR42_RS27875 0.36 +0.2
1,616,951 + RR42_RS27875 0.38 +0.6
1,616,951 + RR42_RS27875 0.38 -0.6
1,616,952 - RR42_RS27875 0.38 +2.7
1,617,092 + RR42_RS27875 0.46 -0.4
1,617,093 - RR42_RS27875 0.46 -0.9
1,617,210 - RR42_RS27875 0.52 +1.3
1,617,210 - RR42_RS27875 0.52 -0.1

Or see this region's nucleotide sequence