Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26540

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26530 and RR42_RS26535 are separated by 110 nucleotidesRR42_RS26535 and RR42_RS26540 overlap by 4 nucleotidesRR42_RS26540 and RR42_RS26545 are separated by 89 nucleotides RR42_RS26530: RR42_RS26530 - LacI family transcriptional regulator, at 1,308,382 to 1,309,356 _RS26530 RR42_RS26535: RR42_RS26535 - diguanylate cyclase, at 1,309,467 to 1,310,150 _RS26535 RR42_RS26540: RR42_RS26540 - 3-phosphoglycerate dehydrogenase, at 1,310,147 to 1,311,082 _RS26540 RR42_RS26545: RR42_RS26545 - ABC transporter substrate-binding protein, at 1,311,172 to 1,312,155 _RS26545 Position (kb) 1310 1311 1312Strain fitness (log2 ratio) -2 -1 0 1 2at 1309.260 kb on - strandat 1309.260 kb on - strandat 1309.383 kb on + strandat 1309.391 kb on + strandat 1309.392 kb on - strandat 1309.392 kb on - strandat 1309.392 kb on - strandat 1309.399 kb on + strandat 1309.399 kb on + strandat 1309.399 kb on + strandat 1309.399 kb on + strandat 1309.400 kb on - strandat 1309.400 kb on - strandat 1309.400 kb on - strandat 1309.423 kb on + strandat 1309.424 kb on - strandat 1309.424 kb on - strandat 1309.613 kb on + strand, within RR42_RS26535at 1309.614 kb on - strand, within RR42_RS26535at 1309.614 kb on - strand, within RR42_RS26535at 1309.848 kb on + strand, within RR42_RS26535at 1310.309 kb on + strand, within RR42_RS26540at 1311.011 kb on + strandat 1311.012 kb on - strandat 1311.012 kb on - strandat 1311.012 kb on - strandat 1311.012 kb on - strandat 1311.012 kb on - strandat 1311.019 kb on + strandat 1311.020 kb on - strandat 1311.020 kb on - strandat 1311.043 kb on + strandat 1311.412 kb on - strand, within RR42_RS26545at 1311.472 kb on + strand, within RR42_RS26545at 1311.472 kb on + strand, within RR42_RS26545at 1311.514 kb on + strand, within RR42_RS26545at 1311.514 kb on + strand, within RR42_RS26545at 1311.515 kb on - strand, within RR42_RS26545at 1311.589 kb on + strand, within RR42_RS26545at 1311.646 kb on + strand, within RR42_RS26545at 1311.646 kb on + strand, within RR42_RS26545at 1311.647 kb on - strand, within RR42_RS26545at 1311.647 kb on - strand, within RR42_RS26545at 1311.647 kb on - strand, within RR42_RS26545

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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1,309,260 - -0.9
1,309,260 - -0.2
1,309,383 + -0.2
1,309,391 + +0.4
1,309,392 - -1.5
1,309,392 - +0.9
1,309,392 - +0.0
1,309,399 + -1.8
1,309,399 + +0.5
1,309,399 + -1.2
1,309,399 + +0.1
1,309,400 - -0.3
1,309,400 - -0.2
1,309,400 - -1.5
1,309,423 + +0.6
1,309,424 - +0.4
1,309,424 - +0.7
1,309,613 + RR42_RS26535 0.21 +2.1
1,309,614 - RR42_RS26535 0.21 -0.3
1,309,614 - RR42_RS26535 0.21 +0.8
1,309,848 + RR42_RS26535 0.56 -0.5
1,310,309 + RR42_RS26540 0.17 -1.3
1,311,011 + -0.5
1,311,012 - +0.8
1,311,012 - +0.0
1,311,012 - -0.7
1,311,012 - -0.1
1,311,012 - +0.5
1,311,019 + +0.3
1,311,020 - +0.4
1,311,020 - -0.8
1,311,043 + -1.2
1,311,412 - RR42_RS26545 0.24 +1.8
1,311,472 + RR42_RS26545 0.30 -0.0
1,311,472 + RR42_RS26545 0.30 -1.1
1,311,514 + RR42_RS26545 0.35 +0.3
1,311,514 + RR42_RS26545 0.35 +0.1
1,311,515 - RR42_RS26545 0.35 +0.1
1,311,589 + RR42_RS26545 0.42 +0.4
1,311,646 + RR42_RS26545 0.48 -0.1
1,311,646 + RR42_RS26545 0.48 +0.4
1,311,647 - RR42_RS26545 0.48 +0.4
1,311,647 - RR42_RS26545 0.48 -1.3
1,311,647 - RR42_RS26545 0.48 +0.1

Or see this region's nucleotide sequence