Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24675 and RR42_RS24680 are separated by 42 nucleotides RR42_RS24680 and RR42_RS24685 are separated by 39 nucleotides RR42_RS24685 and RR42_RS24690 are separated by 41 nucleotides RR42_RS24690 and RR42_RS24695 are separated by 95 nucleotides
RR42_RS24675: RR42_RS24675 - hypothetical protein, at 873,941 to 875,110
_RS24675
RR42_RS24680: RR42_RS24680 - hypothetical protein, at 875,153 to 875,704
_RS24680
RR42_RS24685: RR42_RS24685 - hypothetical protein, at 875,744 to 876,016
_RS24685
RR42_RS24690: RR42_RS24690 - hypothetical protein, at 876,058 to 876,303
_RS24690
RR42_RS24695: RR42_RS24695 - membrane protein, at 876,399 to 877,115
_RS24695
Position (kb) 875
876
877 Strain fitness (log2 ratio) -2
-1
0
1 at 875.019 kb on - strand at 875.117 kb on + strand at 875.117 kb on + strand at 875.117 kb on + strand at 875.118 kb on - strand at 875.128 kb on + strand at 875.218 kb on + strand, within RR42_RS24680 at 875.219 kb on - strand, within RR42_RS24680 at 875.636 kb on - strand, within RR42_RS24680 at 875.646 kb on + strand, within RR42_RS24680 at 875.647 kb on - strand, within RR42_RS24680 at 875.647 kb on - strand, within RR42_RS24680 at 875.658 kb on + strand at 875.698 kb on + strand at 875.699 kb on - strand at 875.837 kb on - strand, within RR42_RS24685 at 875.867 kb on + strand, within RR42_RS24685 at 875.956 kb on - strand, within RR42_RS24685 at 876.135 kb on + strand, within RR42_RS24690 at 876.329 kb on + strand at 876.330 kb on - strand at 876.330 kb on - strand at 876.333 kb on - strand at 876.333 kb on - strand at 876.333 kb on - strand at 876.751 kb on + strand, within RR42_RS24695 at 876.752 kb on - strand, within RR42_RS24695 at 876.752 kb on - strand, within RR42_RS24695 at 876.752 kb on - strand, within RR42_RS24695 at 876.752 kb on - strand, within RR42_RS24695 at 876.816 kb on - strand, within RR42_RS24695 at 876.817 kb on + strand, within RR42_RS24695 at 876.818 kb on - strand, within RR42_RS24695 at 876.887 kb on - strand, within RR42_RS24695 at 876.914 kb on - strand, within RR42_RS24695 at 876.914 kb on - strand, within RR42_RS24695
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 875,019 - -0.3 875,117 + -0.5 875,117 + -0.3 875,117 + -0.3 875,118 - -0.7 875,128 + -0.0 875,218 + RR42_RS24680 0.12 +0.3 875,219 - RR42_RS24680 0.12 -1.7 875,636 - RR42_RS24680 0.88 +0.0 875,646 + RR42_RS24680 0.89 -0.1 875,647 - RR42_RS24680 0.89 +0.5 875,647 - RR42_RS24680 0.89 +1.2 875,658 + +0.3 875,698 + -1.1 875,699 - -0.8 875,837 - RR42_RS24685 0.34 -0.1 875,867 + RR42_RS24685 0.45 -1.3 875,956 - RR42_RS24685 0.78 -1.9 876,135 + RR42_RS24690 0.31 -0.3 876,329 + +0.7 876,330 - -0.6 876,330 - -0.1 876,333 - -0.0 876,333 - +0.2 876,333 - +0.2 876,751 + RR42_RS24695 0.49 -1.1 876,752 - RR42_RS24695 0.49 -0.3 876,752 - RR42_RS24695 0.49 -0.1 876,752 - RR42_RS24695 0.49 -0.5 876,752 - RR42_RS24695 0.49 -0.4 876,816 - RR42_RS24695 0.58 -0.7 876,817 + RR42_RS24695 0.58 -0.9 876,818 - RR42_RS24695 0.58 -1.3 876,887 - RR42_RS24695 0.68 +0.5 876,914 - RR42_RS24695 0.72 +0.9 876,914 - RR42_RS24695 0.72 +0.9
Or see this region's nucleotide sequence