Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24605

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS24600 and RR42_RS24605 are separated by 333 nucleotidesRR42_RS24605 and RR42_RS24610 are separated by 815 nucleotides RR42_RS24600: RR42_RS24600 - phytanoyl-CoA dioxygenase, at 854,197 to 855,027 _RS24600 RR42_RS24605: RR42_RS24605 - TetR family transcriptional regulator, at 855,361 to 856,794 _RS24605 RR42_RS24610: RR42_RS24610 - FAD-dependent oxidoreductase, at 857,610 to 858,983 _RS24610 Position (kb) 855 856 857Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 854.377 kb on + strand, within RR42_RS24600at 854.378 kb on - strand, within RR42_RS24600at 854.548 kb on + strand, within RR42_RS24600at 854.548 kb on + strand, within RR42_RS24600at 854.549 kb on - strand, within RR42_RS24600at 854.657 kb on - strand, within RR42_RS24600at 854.664 kb on + strand, within RR42_RS24600at 854.665 kb on - strand, within RR42_RS24600at 854.691 kb on + strand, within RR42_RS24600at 854.691 kb on + strand, within RR42_RS24600at 854.691 kb on + strand, within RR42_RS24600at 854.693 kb on - strand, within RR42_RS24600at 854.875 kb on - strand, within RR42_RS24600at 854.956 kb on - strandat 855.007 kb on + strandat 855.059 kb on - strandat 855.168 kb on + strandat 855.168 kb on + strandat 855.169 kb on - strandat 855.169 kb on - strandat 855.281 kb on - strandat 855.333 kb on - strandat 855.378 kb on + strandat 855.594 kb on - strand, within RR42_RS24605at 855.609 kb on - strand, within RR42_RS24605at 855.609 kb on - strand, within RR42_RS24605at 855.762 kb on - strand, within RR42_RS24605at 855.774 kb on - strand, within RR42_RS24605at 855.830 kb on + strand, within RR42_RS24605at 855.897 kb on - strand, within RR42_RS24605at 856.027 kb on + strand, within RR42_RS24605at 856.039 kb on + strand, within RR42_RS24605at 856.040 kb on - strand, within RR42_RS24605at 856.040 kb on - strand, within RR42_RS24605at 856.160 kb on - strand, within RR42_RS24605at 856.193 kb on + strand, within RR42_RS24605at 856.193 kb on + strand, within RR42_RS24605at 856.193 kb on + strand, within RR42_RS24605at 856.351 kb on - strand, within RR42_RS24605at 856.514 kb on + strand, within RR42_RS24605at 856.515 kb on - strand, within RR42_RS24605at 856.536 kb on + strand, within RR42_RS24605at 856.537 kb on - strand, within RR42_RS24605at 856.538 kb on + strand, within RR42_RS24605at 856.584 kb on - strand, within RR42_RS24605at 856.587 kb on - strand, within RR42_RS24605at 856.625 kb on - strand, within RR42_RS24605at 856.633 kb on + strand, within RR42_RS24605at 856.816 kb on - strandat 856.835 kb on + strandat 856.836 kb on - strandat 856.893 kb on - strandat 856.936 kb on + strandat 856.993 kb on - strandat 856.993 kb on - strandat 856.993 kb on - strandat 856.993 kb on - strandat 856.993 kb on - strandat 857.124 kb on - strandat 857.178 kb on + strandat 857.383 kb on + strandat 857.384 kb on - strandat 857.670 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
854,377 + RR42_RS24600 0.22 +0.4
854,378 - RR42_RS24600 0.22 +0.8
854,548 + RR42_RS24600 0.42 -0.1
854,548 + RR42_RS24600 0.42 +0.7
854,549 - RR42_RS24600 0.42 +0.6
854,657 - RR42_RS24600 0.55 +0.8
854,664 + RR42_RS24600 0.56 -0.9
854,665 - RR42_RS24600 0.56 +0.3
854,691 + RR42_RS24600 0.59 +0.3
854,691 + RR42_RS24600 0.59 +0.4
854,691 + RR42_RS24600 0.59 -2.4
854,693 - RR42_RS24600 0.60 -0.7
854,875 - RR42_RS24600 0.82 +1.1
854,956 - -0.2
855,007 + -0.9
855,059 - +0.7
855,168 + +1.1
855,168 + -0.1
855,169 - -0.7
855,169 - -0.4
855,281 - +0.4
855,333 - -0.4
855,378 + -3.0
855,594 - RR42_RS24605 0.16 -1.1
855,609 - RR42_RS24605 0.17 -2.9
855,609 - RR42_RS24605 0.17 -1.3
855,762 - RR42_RS24605 0.28 -0.6
855,774 - RR42_RS24605 0.29 +1.6
855,830 + RR42_RS24605 0.33 -3.1
855,897 - RR42_RS24605 0.37 -2.5
856,027 + RR42_RS24605 0.46 -0.1
856,039 + RR42_RS24605 0.47 -1.1
856,040 - RR42_RS24605 0.47 -2.4
856,040 - RR42_RS24605 0.47 -1.1
856,160 - RR42_RS24605 0.56 -2.6
856,193 + RR42_RS24605 0.58 -1.3
856,193 + RR42_RS24605 0.58 -0.1
856,193 + RR42_RS24605 0.58 -1.4
856,351 - RR42_RS24605 0.69 -2.7
856,514 + RR42_RS24605 0.80 -0.9
856,515 - RR42_RS24605 0.80 +0.3
856,536 + RR42_RS24605 0.82 -3.8
856,537 - RR42_RS24605 0.82 +0.2
856,538 + RR42_RS24605 0.82 -0.1
856,584 - RR42_RS24605 0.85 -1.4
856,587 - RR42_RS24605 0.85 -0.7
856,625 - RR42_RS24605 0.88 +0.9
856,633 + RR42_RS24605 0.89 -0.1
856,816 - +0.2
856,835 + -1.1
856,836 - +0.0
856,893 - -0.8
856,936 + +0.1
856,993 - +1.2
856,993 - -0.1
856,993 - -0.7
856,993 - +0.2
856,993 - +1.1
857,124 - -0.8
857,178 + +0.0
857,383 + +0.9
857,384 - -0.1
857,670 + -0.4

Or see this region's nucleotide sequence