Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24600 and RR42_RS24605 are separated by 333 nucleotides RR42_RS24605 and RR42_RS24610 are separated by 815 nucleotides
RR42_RS24600: RR42_RS24600 - phytanoyl-CoA dioxygenase, at 854,197 to 855,027
_RS24600
RR42_RS24605: RR42_RS24605 - TetR family transcriptional regulator, at 855,361 to 856,794
_RS24605
RR42_RS24610: RR42_RS24610 - FAD-dependent oxidoreductase, at 857,610 to 858,983
_RS24610
Position (kb) 855
856
857 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 854.377 kb on + strand, within RR42_RS24600 at 854.378 kb on - strand, within RR42_RS24600 at 854.548 kb on + strand, within RR42_RS24600 at 854.548 kb on + strand, within RR42_RS24600 at 854.549 kb on - strand, within RR42_RS24600 at 854.657 kb on - strand, within RR42_RS24600 at 854.664 kb on + strand, within RR42_RS24600 at 854.665 kb on - strand, within RR42_RS24600 at 854.691 kb on + strand, within RR42_RS24600 at 854.691 kb on + strand, within RR42_RS24600 at 854.691 kb on + strand, within RR42_RS24600 at 854.693 kb on - strand, within RR42_RS24600 at 854.875 kb on - strand, within RR42_RS24600 at 854.956 kb on - strand at 855.007 kb on + strand at 855.059 kb on - strand at 855.168 kb on + strand at 855.168 kb on + strand at 855.169 kb on - strand at 855.169 kb on - strand at 855.281 kb on - strand at 855.333 kb on - strand at 855.378 kb on + strand at 855.594 kb on - strand, within RR42_RS24605 at 855.609 kb on - strand, within RR42_RS24605 at 855.609 kb on - strand, within RR42_RS24605 at 855.762 kb on - strand, within RR42_RS24605 at 855.774 kb on - strand, within RR42_RS24605 at 855.830 kb on + strand, within RR42_RS24605 at 855.897 kb on - strand, within RR42_RS24605 at 856.027 kb on + strand, within RR42_RS24605 at 856.039 kb on + strand, within RR42_RS24605 at 856.040 kb on - strand, within RR42_RS24605 at 856.040 kb on - strand, within RR42_RS24605 at 856.160 kb on - strand, within RR42_RS24605 at 856.193 kb on + strand, within RR42_RS24605 at 856.193 kb on + strand, within RR42_RS24605 at 856.193 kb on + strand, within RR42_RS24605 at 856.351 kb on - strand, within RR42_RS24605 at 856.514 kb on + strand, within RR42_RS24605 at 856.515 kb on - strand, within RR42_RS24605 at 856.536 kb on + strand, within RR42_RS24605 at 856.537 kb on - strand, within RR42_RS24605 at 856.538 kb on + strand, within RR42_RS24605 at 856.584 kb on - strand, within RR42_RS24605 at 856.587 kb on - strand, within RR42_RS24605 at 856.625 kb on - strand, within RR42_RS24605 at 856.633 kb on + strand, within RR42_RS24605 at 856.816 kb on - strand at 856.835 kb on + strand at 856.836 kb on - strand at 856.893 kb on - strand at 856.936 kb on + strand at 856.993 kb on - strand at 856.993 kb on - strand at 856.993 kb on - strand at 856.993 kb on - strand at 856.993 kb on - strand at 857.124 kb on - strand at 857.178 kb on + strand at 857.383 kb on + strand at 857.384 kb on - strand at 857.670 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 854,377 + RR42_RS24600 0.22 +0.4 854,378 - RR42_RS24600 0.22 +0.8 854,548 + RR42_RS24600 0.42 -0.1 854,548 + RR42_RS24600 0.42 +0.7 854,549 - RR42_RS24600 0.42 +0.6 854,657 - RR42_RS24600 0.55 +0.8 854,664 + RR42_RS24600 0.56 -0.9 854,665 - RR42_RS24600 0.56 +0.3 854,691 + RR42_RS24600 0.59 +0.3 854,691 + RR42_RS24600 0.59 +0.4 854,691 + RR42_RS24600 0.59 -2.4 854,693 - RR42_RS24600 0.60 -0.7 854,875 - RR42_RS24600 0.82 +1.1 854,956 - -0.2 855,007 + -0.9 855,059 - +0.7 855,168 + +1.1 855,168 + -0.1 855,169 - -0.7 855,169 - -0.4 855,281 - +0.4 855,333 - -0.4 855,378 + -3.0 855,594 - RR42_RS24605 0.16 -1.1 855,609 - RR42_RS24605 0.17 -2.9 855,609 - RR42_RS24605 0.17 -1.3 855,762 - RR42_RS24605 0.28 -0.6 855,774 - RR42_RS24605 0.29 +1.6 855,830 + RR42_RS24605 0.33 -3.1 855,897 - RR42_RS24605 0.37 -2.5 856,027 + RR42_RS24605 0.46 -0.1 856,039 + RR42_RS24605 0.47 -1.1 856,040 - RR42_RS24605 0.47 -2.4 856,040 - RR42_RS24605 0.47 -1.1 856,160 - RR42_RS24605 0.56 -2.6 856,193 + RR42_RS24605 0.58 -1.3 856,193 + RR42_RS24605 0.58 -0.1 856,193 + RR42_RS24605 0.58 -1.4 856,351 - RR42_RS24605 0.69 -2.7 856,514 + RR42_RS24605 0.80 -0.9 856,515 - RR42_RS24605 0.80 +0.3 856,536 + RR42_RS24605 0.82 -3.8 856,537 - RR42_RS24605 0.82 +0.2 856,538 + RR42_RS24605 0.82 -0.1 856,584 - RR42_RS24605 0.85 -1.4 856,587 - RR42_RS24605 0.85 -0.7 856,625 - RR42_RS24605 0.88 +0.9 856,633 + RR42_RS24605 0.89 -0.1 856,816 - +0.2 856,835 + -1.1 856,836 - +0.0 856,893 - -0.8 856,936 + +0.1 856,993 - +1.2 856,993 - -0.1 856,993 - -0.7 856,993 - +0.2 856,993 - +1.1 857,124 - -0.8 857,178 + +0.0 857,383 + +0.9 857,384 - -0.1 857,670 + -0.4
Or see this region's nucleotide sequence