Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24505 and RR42_RS24510 are separated by 8 nucleotides RR42_RS24510 and RR42_RS24515 overlap by 4 nucleotides RR42_RS24515 and RR42_RS24520 overlap by 4 nucleotides
RR42_RS24505: RR42_RS24505 - hypothetical protein, at 830,264 to 831,919
_RS24505
RR42_RS24510: RR42_RS24510 - hypothetical protein, at 831,928 to 832,356
_RS24510
RR42_RS24515: RR42_RS24515 - hypothetical protein, at 832,353 to 833,003
_RS24515
RR42_RS24520: RR42_RS24520 - hypothetical protein, at 833,000 to 833,551
_RS24520
Position (kb) 831
832
833 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 831.111 kb on - strand, within RR42_RS24505 at 831.214 kb on - strand, within RR42_RS24505 at 831.214 kb on - strand, within RR42_RS24505 at 831.399 kb on + strand, within RR42_RS24505 at 831.425 kb on + strand, within RR42_RS24505 at 831.444 kb on + strand, within RR42_RS24505 at 831.444 kb on + strand, within RR42_RS24505 at 831.445 kb on - strand, within RR42_RS24505 at 831.529 kb on - strand, within RR42_RS24505 at 831.570 kb on + strand, within RR42_RS24505 at 831.623 kb on + strand, within RR42_RS24505 at 831.750 kb on + strand, within RR42_RS24505 at 831.751 kb on - strand, within RR42_RS24505 at 831.751 kb on - strand, within RR42_RS24505 at 831.764 kb on + strand at 831.767 kb on + strand at 831.767 kb on + strand at 831.768 kb on - strand at 831.768 kb on - strand at 831.817 kb on - strand at 831.933 kb on + strand at 831.934 kb on - strand at 832.212 kb on + strand, within RR42_RS24510 at 832.213 kb on - strand, within RR42_RS24510 at 832.670 kb on + strand, within RR42_RS24515 at 832.671 kb on - strand, within RR42_RS24515 at 832.756 kb on + strand, within RR42_RS24515 at 832.756 kb on + strand, within RR42_RS24515 at 832.793 kb on - strand, within RR42_RS24515 at 833.035 kb on - strand at 833.035 kb on - strand at 833.035 kb on - strand at 833.052 kb on + strand at 833.053 kb on - strand at 833.053 kb on - strand at 833.053 kb on - strand at 833.053 kb on - strand at 833.194 kb on - strand, within RR42_RS24520 at 833.194 kb on - strand, within RR42_RS24520 at 833.280 kb on + strand, within RR42_RS24520 at 833.281 kb on - strand, within RR42_RS24520
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 831,111 - RR42_RS24505 0.51 -0.2 831,214 - RR42_RS24505 0.57 -2.1 831,214 - RR42_RS24505 0.57 +0.6 831,399 + RR42_RS24505 0.69 +0.0 831,425 + RR42_RS24505 0.70 +0.4 831,444 + RR42_RS24505 0.71 -3.0 831,444 + RR42_RS24505 0.71 +2.5 831,445 - RR42_RS24505 0.71 +1.1 831,529 - RR42_RS24505 0.76 -0.1 831,570 + RR42_RS24505 0.79 +0.3 831,623 + RR42_RS24505 0.82 +0.0 831,750 + RR42_RS24505 0.90 -0.7 831,751 - RR42_RS24505 0.90 +0.2 831,751 - RR42_RS24505 0.90 -0.5 831,764 + -0.6 831,767 + +0.2 831,767 + +0.1 831,768 - -1.1 831,768 - +0.1 831,817 - +1.0 831,933 + +0.5 831,934 - -1.1 832,212 + RR42_RS24510 0.66 -1.4 832,213 - RR42_RS24510 0.66 -0.6 832,670 + RR42_RS24515 0.49 -0.1 832,671 - RR42_RS24515 0.49 -0.9 832,756 + RR42_RS24515 0.62 +0.9 832,756 + RR42_RS24515 0.62 -0.1 832,793 - RR42_RS24515 0.68 +1.4 833,035 - +0.2 833,035 - -0.1 833,035 - +1.5 833,052 + +0.7 833,053 - +0.0 833,053 - -0.1 833,053 - +1.1 833,053 - +1.0 833,194 - RR42_RS24520 0.35 +1.3 833,194 - RR42_RS24520 0.35 -0.1 833,280 + RR42_RS24520 0.51 +0.3 833,281 - RR42_RS24520 0.51 -0.5
Or see this region's nucleotide sequence