Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24510

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24505 and RR42_RS24510 are separated by 8 nucleotidesRR42_RS24510 and RR42_RS24515 overlap by 4 nucleotidesRR42_RS24515 and RR42_RS24520 overlap by 4 nucleotides RR42_RS24505: RR42_RS24505 - hypothetical protein, at 830,264 to 831,919 _RS24505 RR42_RS24510: RR42_RS24510 - hypothetical protein, at 831,928 to 832,356 _RS24510 RR42_RS24515: RR42_RS24515 - hypothetical protein, at 832,353 to 833,003 _RS24515 RR42_RS24520: RR42_RS24520 - hypothetical protein, at 833,000 to 833,551 _RS24520 Position (kb) 831 832 833Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 831.111 kb on - strand, within RR42_RS24505at 831.214 kb on - strand, within RR42_RS24505at 831.214 kb on - strand, within RR42_RS24505at 831.399 kb on + strand, within RR42_RS24505at 831.425 kb on + strand, within RR42_RS24505at 831.444 kb on + strand, within RR42_RS24505at 831.444 kb on + strand, within RR42_RS24505at 831.445 kb on - strand, within RR42_RS24505at 831.529 kb on - strand, within RR42_RS24505at 831.570 kb on + strand, within RR42_RS24505at 831.623 kb on + strand, within RR42_RS24505at 831.750 kb on + strand, within RR42_RS24505at 831.751 kb on - strand, within RR42_RS24505at 831.751 kb on - strand, within RR42_RS24505at 831.764 kb on + strandat 831.767 kb on + strandat 831.767 kb on + strandat 831.768 kb on - strandat 831.768 kb on - strandat 831.817 kb on - strandat 831.933 kb on + strandat 831.934 kb on - strandat 832.212 kb on + strand, within RR42_RS24510at 832.213 kb on - strand, within RR42_RS24510at 832.670 kb on + strand, within RR42_RS24515at 832.671 kb on - strand, within RR42_RS24515at 832.756 kb on + strand, within RR42_RS24515at 832.756 kb on + strand, within RR42_RS24515at 832.793 kb on - strand, within RR42_RS24515at 833.035 kb on - strandat 833.035 kb on - strandat 833.035 kb on - strandat 833.052 kb on + strandat 833.053 kb on - strandat 833.053 kb on - strandat 833.053 kb on - strandat 833.053 kb on - strandat 833.194 kb on - strand, within RR42_RS24520at 833.194 kb on - strand, within RR42_RS24520at 833.280 kb on + strand, within RR42_RS24520at 833.281 kb on - strand, within RR42_RS24520

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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831,111 - RR42_RS24505 0.51 -0.2
831,214 - RR42_RS24505 0.57 -2.1
831,214 - RR42_RS24505 0.57 +0.6
831,399 + RR42_RS24505 0.69 +0.0
831,425 + RR42_RS24505 0.70 +0.4
831,444 + RR42_RS24505 0.71 -3.0
831,444 + RR42_RS24505 0.71 +2.5
831,445 - RR42_RS24505 0.71 +1.1
831,529 - RR42_RS24505 0.76 -0.1
831,570 + RR42_RS24505 0.79 +0.3
831,623 + RR42_RS24505 0.82 +0.0
831,750 + RR42_RS24505 0.90 -0.7
831,751 - RR42_RS24505 0.90 +0.2
831,751 - RR42_RS24505 0.90 -0.5
831,764 + -0.6
831,767 + +0.2
831,767 + +0.1
831,768 - -1.1
831,768 - +0.1
831,817 - +1.0
831,933 + +0.5
831,934 - -1.1
832,212 + RR42_RS24510 0.66 -1.4
832,213 - RR42_RS24510 0.66 -0.6
832,670 + RR42_RS24515 0.49 -0.1
832,671 - RR42_RS24515 0.49 -0.9
832,756 + RR42_RS24515 0.62 +0.9
832,756 + RR42_RS24515 0.62 -0.1
832,793 - RR42_RS24515 0.68 +1.4
833,035 - +0.2
833,035 - -0.1
833,035 - +1.5
833,052 + +0.7
833,053 - +0.0
833,053 - -0.1
833,053 - +1.1
833,053 - +1.0
833,194 - RR42_RS24520 0.35 +1.3
833,194 - RR42_RS24520 0.35 -0.1
833,280 + RR42_RS24520 0.51 +0.3
833,281 - RR42_RS24520 0.51 -0.5

Or see this region's nucleotide sequence