Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21430

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21425 and RR42_RS21430 are separated by 12 nucleotidesRR42_RS21430 and RR42_RS21435 are separated by 345 nucleotidesRR42_RS21435 and RR42_RS21440 are separated by 222 nucleotides RR42_RS21425: RR42_RS21425 - hypothetical protein, at 136,106 to 136,963 _RS21425 RR42_RS21430: RR42_RS21430 - alpha-ketoglutarate permease, at 136,976 to 138,286 _RS21430 RR42_RS21435: RR42_RS21435 - hypothetical protein, at 138,632 to 139,015 _RS21435 RR42_RS21440: RR42_RS21440 - DNA-3-methyladenine glycosylase, at 139,238 to 142,051 _RS21440 Position (kb) 136 137 138 139Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 136.020 kb on + strandat 136.139 kb on + strandat 136.289 kb on + strand, within RR42_RS21425at 136.289 kb on + strand, within RR42_RS21425at 136.290 kb on - strand, within RR42_RS21425at 136.404 kb on - strand, within RR42_RS21425at 136.436 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.523 kb on + strand, within RR42_RS21425at 136.523 kb on + strand, within RR42_RS21425at 136.589 kb on + strand, within RR42_RS21425at 136.590 kb on - strand, within RR42_RS21425at 136.590 kb on - strand, within RR42_RS21425at 136.590 kb on - strand, within RR42_RS21425at 136.730 kb on + strand, within RR42_RS21425at 136.730 kb on + strand, within RR42_RS21425at 136.731 kb on - strand, within RR42_RS21425at 136.731 kb on - strand, within RR42_RS21425at 136.732 kb on + strand, within RR42_RS21425at 136.732 kb on + strand, within RR42_RS21425at 136.733 kb on - strand, within RR42_RS21425at 136.995 kb on + strandat 136.996 kb on - strandat 137.059 kb on - strandat 137.064 kb on + strandat 137.065 kb on - strandat 137.065 kb on - strandat 137.065 kb on - strandat 137.065 kb on - strandat 137.110 kb on - strand, within RR42_RS21430at 137.148 kb on + strand, within RR42_RS21430at 137.148 kb on + strand, within RR42_RS21430at 137.148 kb on + strand, within RR42_RS21430at 137.149 kb on - strand, within RR42_RS21430at 137.223 kb on + strand, within RR42_RS21430at 137.224 kb on - strand, within RR42_RS21430at 137.224 kb on - strand, within RR42_RS21430at 137.347 kb on + strand, within RR42_RS21430at 137.347 kb on + strand, within RR42_RS21430at 137.348 kb on - strand, within RR42_RS21430at 137.348 kb on - strand, within RR42_RS21430at 137.348 kb on - strand, within RR42_RS21430at 137.406 kb on + strand, within RR42_RS21430at 137.406 kb on + strand, within RR42_RS21430at 137.406 kb on + strand, within RR42_RS21430at 137.406 kb on + strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.433 kb on + strand, within RR42_RS21430at 137.433 kb on + strand, within RR42_RS21430at 137.433 kb on + strand, within RR42_RS21430at 137.434 kb on - strand, within RR42_RS21430at 137.434 kb on - strand, within RR42_RS21430at 137.485 kb on + strand, within RR42_RS21430at 137.485 kb on + strand, within RR42_RS21430at 137.486 kb on - strand, within RR42_RS21430at 137.486 kb on - strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.500 kb on + strand, within RR42_RS21430at 137.502 kb on + strand, within RR42_RS21430at 137.503 kb on - strand, within RR42_RS21430at 137.503 kb on - strand, within RR42_RS21430at 137.527 kb on + strand, within RR42_RS21430at 137.527 kb on + strand, within RR42_RS21430at 137.530 kb on - strand, within RR42_RS21430at 137.557 kb on + strand, within RR42_RS21430at 137.557 kb on + strand, within RR42_RS21430at 137.557 kb on + strand, within RR42_RS21430at 137.558 kb on - strand, within RR42_RS21430at 137.558 kb on - strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.840 kb on - strand, within RR42_RS21430at 137.840 kb on - strand, within RR42_RS21430at 137.840 kb on - strand, within RR42_RS21430at 137.840 kb on - strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.860 kb on - strand, within RR42_RS21430at 137.937 kb on + strand, within RR42_RS21430at 137.937 kb on + strand, within RR42_RS21430at 137.938 kb on - strand, within RR42_RS21430at 137.938 kb on - strand, within RR42_RS21430at 138.144 kb on + strand, within RR42_RS21430at 138.169 kb on - strandat 138.169 kb on - strandat 138.220 kb on - strandat 138.321 kb on + strandat 138.321 kb on + strandat 138.322 kb on - strandat 138.362 kb on + strandat 138.363 kb on - strandat 138.409 kb on + strandat 138.409 kb on + strandat 138.410 kb on - strandat 138.410 kb on - strandat 138.410 kb on - strandat 138.410 kb on - strandat 138.594 kb on + strandat 138.594 kb on + strandat 138.595 kb on - strandat 138.595 kb on - strandat 138.662 kb on + strandat 138.693 kb on + strand, within RR42_RS21435at 138.771 kb on + strand, within RR42_RS21435at 138.933 kb on + strand, within RR42_RS21435at 138.933 kb on + strand, within RR42_RS21435at 138.997 kb on + strandat 138.998 kb on - strandat 138.998 kb on - strandat 139.026 kb on + strandat 139.026 kb on + strandat 139.026 kb on + strandat 139.026 kb on + strandat 139.026 kb on + strandat 139.027 kb on - strandat 139.027 kb on - strandat 139.027 kb on - strandat 139.027 kb on - strandat 139.027 kb on - strandat 139.029 kb on - strandat 139.029 kb on - strandat 139.029 kb on - strandat 139.038 kb on + strandat 139.051 kb on + strandat 139.101 kb on + strandat 139.101 kb on + strandat 139.101 kb on + strandat 139.102 kb on - strandat 139.102 kb on - strandat 139.154 kb on + strandat 139.154 kb on + strandat 139.154 kb on + strandat 139.154 kb on + strandat 139.155 kb on - strandat 139.155 kb on - strandat 139.155 kb on - strandat 139.232 kb on + strandat 139.232 kb on + strandat 139.281 kb on + strandat 139.281 kb on + strandat 139.281 kb on + strandat 139.282 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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136,020 + +0.9
136,139 + +0.1
136,289 + RR42_RS21425 0.21 -2.1
136,289 + RR42_RS21425 0.21 -0.4
136,290 - RR42_RS21425 0.21 +0.6
136,404 - RR42_RS21425 0.35 +0.8
136,436 + RR42_RS21425 0.38 +0.5
136,481 + RR42_RS21425 0.44 +0.8
136,481 + RR42_RS21425 0.44 -0.6
136,481 + RR42_RS21425 0.44 +0.1
136,481 + RR42_RS21425 0.44 -0.6
136,523 + RR42_RS21425 0.49 -0.1
136,523 + RR42_RS21425 0.49 +0.1
136,589 + RR42_RS21425 0.56 +0.6
136,590 - RR42_RS21425 0.56 +1.3
136,590 - RR42_RS21425 0.56 +0.9
136,590 - RR42_RS21425 0.56 -0.3
136,730 + RR42_RS21425 0.73 -0.0
136,730 + RR42_RS21425 0.73 +0.7
136,731 - RR42_RS21425 0.73 +1.6
136,731 - RR42_RS21425 0.73 -0.8
136,732 + RR42_RS21425 0.73 +0.9
136,732 + RR42_RS21425 0.73 -0.3
136,733 - RR42_RS21425 0.73 +0.7
136,995 + +1.1
136,996 - -0.5
137,059 - -0.5
137,064 + +0.3
137,065 - -0.6
137,065 - -0.1
137,065 - +0.2
137,065 - +0.6
137,110 - RR42_RS21430 0.10 -0.3
137,148 + RR42_RS21430 0.13 -1.2
137,148 + RR42_RS21430 0.13 +0.2
137,148 + RR42_RS21430 0.13 +0.1
137,149 - RR42_RS21430 0.13 -0.1
137,223 + RR42_RS21430 0.19 -0.8
137,224 - RR42_RS21430 0.19 +0.1
137,224 - RR42_RS21430 0.19 +0.5
137,347 + RR42_RS21430 0.28 +0.3
137,347 + RR42_RS21430 0.28 +0.0
137,348 - RR42_RS21430 0.28 -1.2
137,348 - RR42_RS21430 0.28 -0.0
137,348 - RR42_RS21430 0.28 +1.8
137,406 + RR42_RS21430 0.33 -0.1
137,406 + RR42_RS21430 0.33 +0.9
137,406 + RR42_RS21430 0.33 +0.5
137,406 + RR42_RS21430 0.33 -0.8
137,407 - RR42_RS21430 0.33 +1.4
137,407 - RR42_RS21430 0.33 -0.7
137,407 - RR42_RS21430 0.33 +0.6
137,407 - RR42_RS21430 0.33 +0.6
137,407 - RR42_RS21430 0.33 -0.1
137,407 - RR42_RS21430 0.33 -0.6
137,407 - RR42_RS21430 0.33 -0.6
137,433 + RR42_RS21430 0.35 +0.8
137,433 + RR42_RS21430 0.35 -1.0
137,433 + RR42_RS21430 0.35 -0.5
137,434 - RR42_RS21430 0.35 -0.2
137,434 - RR42_RS21430 0.35 +0.1
137,485 + RR42_RS21430 0.39 -1.5
137,485 + RR42_RS21430 0.39 +0.4
137,486 - RR42_RS21430 0.39 -2.0
137,486 - RR42_RS21430 0.39 -0.2
137,487 + RR42_RS21430 0.39 -1.5
137,487 + RR42_RS21430 0.39 +0.0
137,487 + RR42_RS21430 0.39 +0.5
137,487 + RR42_RS21430 0.39 +0.3
137,487 + RR42_RS21430 0.39 -1.3
137,487 + RR42_RS21430 0.39 -0.4
137,487 + RR42_RS21430 0.39 -1.8
137,487 + RR42_RS21430 0.39 -1.3
137,488 - RR42_RS21430 0.39 -0.2
137,488 - RR42_RS21430 0.39 +1.2
137,488 - RR42_RS21430 0.39 -0.2
137,488 - RR42_RS21430 0.39 +0.2
137,488 - RR42_RS21430 0.39 +0.6
137,500 + RR42_RS21430 0.40 -0.7
137,502 + RR42_RS21430 0.40 +0.5
137,503 - RR42_RS21430 0.40 +0.0
137,503 - RR42_RS21430 0.40 +0.2
137,527 + RR42_RS21430 0.42 +0.3
137,527 + RR42_RS21430 0.42 +2.0
137,530 - RR42_RS21430 0.42 +0.2
137,557 + RR42_RS21430 0.44 -2.1
137,557 + RR42_RS21430 0.44 +0.5
137,557 + RR42_RS21430 0.44 +0.3
137,558 - RR42_RS21430 0.44 +0.7
137,558 - RR42_RS21430 0.44 +0.3
137,839 + RR42_RS21430 0.66 -0.6
137,839 + RR42_RS21430 0.66 -1.4
137,839 + RR42_RS21430 0.66 -0.4
137,839 + RR42_RS21430 0.66 -1.3
137,839 + RR42_RS21430 0.66 -0.0
137,839 + RR42_RS21430 0.66 -0.4
137,840 - RR42_RS21430 0.66 +0.3
137,840 - RR42_RS21430 0.66 +0.2
137,840 - RR42_RS21430 0.66 -0.1
137,840 - RR42_RS21430 0.66 +0.2
137,841 + RR42_RS21430 0.66 -0.4
137,841 + RR42_RS21430 0.66 +0.1
137,841 + RR42_RS21430 0.66 -0.1
137,841 + RR42_RS21430 0.66 -1.1
137,841 + RR42_RS21430 0.66 +1.7
137,841 + RR42_RS21430 0.66 +1.2
137,842 - RR42_RS21430 0.66 +0.1
137,842 - RR42_RS21430 0.66 -1.5
137,842 - RR42_RS21430 0.66 -1.4
137,842 - RR42_RS21430 0.66 -0.2
137,842 - RR42_RS21430 0.66 +0.9
137,860 - RR42_RS21430 0.67 -0.7
137,937 + RR42_RS21430 0.73 +0.7
137,937 + RR42_RS21430 0.73 -1.3
137,938 - RR42_RS21430 0.73 -1.8
137,938 - RR42_RS21430 0.73 +0.9
138,144 + RR42_RS21430 0.89 -0.0
138,169 - +0.1
138,169 - -0.5
138,220 - -0.1
138,321 + +0.8
138,321 + +0.9
138,322 - +0.4
138,362 + -0.7
138,363 - +0.4
138,409 + +1.5
138,409 + -0.1
138,410 - +1.5
138,410 - -1.1
138,410 - +0.8
138,410 - -3.5
138,594 + +0.3
138,594 + +0.3
138,595 - -0.0
138,595 - -0.7
138,662 + -0.3
138,693 + RR42_RS21435 0.16 +1.2
138,771 + RR42_RS21435 0.36 -0.5
138,933 + RR42_RS21435 0.78 -1.6
138,933 + RR42_RS21435 0.78 -2.3
138,997 + -0.0
138,998 - -0.5
138,998 - +1.3
139,026 + -0.4
139,026 + -1.0
139,026 + -0.5
139,026 + +0.2
139,026 + -0.4
139,027 - -2.6
139,027 - +0.5
139,027 - -0.7
139,027 - -0.1
139,027 - -0.7
139,029 - +0.7
139,029 - +1.1
139,029 - +1.2
139,038 + -0.3
139,051 + -0.8
139,101 + +0.4
139,101 + +0.5
139,101 + -1.2
139,102 - -0.7
139,102 - +0.8
139,154 + +1.2
139,154 + +0.9
139,154 + -2.5
139,154 + -2.3
139,155 - -0.6
139,155 - +0.0
139,155 - -0.4
139,232 + -1.4
139,232 + -0.4
139,281 + +0.4
139,281 + -0.9
139,281 + +0.5
139,282 - -1.0

Or see this region's nucleotide sequence