Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21040

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS21030 and RR42_RS21035 are separated by 33 nucleotidesRR42_RS21035 and RR42_RS21040 are separated by 67 nucleotidesRR42_RS21040 and RR42_RS21045 are separated by 652 nucleotides RR42_RS21030: RR42_RS21030 - hypothetical protein, at 45,479 to 45,658 _RS21030 RR42_RS21035: RR42_RS21035 - GntR family transcriptional regulator, at 45,692 to 46,408 _RS21035 RR42_RS21040: RR42_RS21040 - hypothetical protein, at 46,476 to 46,667 _RS21040 RR42_RS21045: RR42_RS21045 - cyanate hydratase, at 47,320 to 47,763 _RS21045 Position (kb) 46 47Strain fitness (log2 ratio) -1 0 1 2at 45.480 kb on + strandat 45.481 kb on - strandat 45.683 kb on + strandat 45.693 kb on + strandat 45.889 kb on - strand, within RR42_RS21035at 46.156 kb on - strand, within RR42_RS21035at 46.212 kb on + strand, within RR42_RS21035at 46.212 kb on + strand, within RR42_RS21035at 46.212 kb on + strand, within RR42_RS21035at 46.244 kb on + strand, within RR42_RS21035at 46.245 kb on - strand, within RR42_RS21035at 46.363 kb on - strandat 46.633 kb on + strand, within RR42_RS21040at 46.724 kb on - strandat 46.736 kb on - strandat 46.736 kb on - strandat 46.908 kb on - strandat 47.173 kb on + strandat 47.174 kb on - strandat 47.174 kb on - strandat 47.335 kb on - strandat 47.533 kb on + strand, within RR42_RS21045at 47.533 kb on + strand, within RR42_RS21045at 47.534 kb on - strand, within RR42_RS21045at 47.534 kb on - strand, within RR42_RS21045at 47.587 kb on + strand, within RR42_RS21045at 47.587 kb on + strand, within RR42_RS21045at 47.587 kb on + strand, within RR42_RS21045at 47.587 kb on + strand, within RR42_RS21045at 47.587 kb on + strand, within RR42_RS21045at 47.588 kb on - strand, within RR42_RS21045at 47.588 kb on - strand, within RR42_RS21045at 47.588 kb on - strand, within RR42_RS21045at 47.606 kb on - strand, within RR42_RS21045at 47.606 kb on - strand, within RR42_RS21045at 47.606 kb on - strand, within RR42_RS21045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
45,480 + +2.4
45,481 - -0.3
45,683 + -0.4
45,693 + -0.2
45,889 - RR42_RS21035 0.27 -0.7
46,156 - RR42_RS21035 0.65 -0.2
46,212 + RR42_RS21035 0.73 +0.3
46,212 + RR42_RS21035 0.73 +2.2
46,212 + RR42_RS21035 0.73 -0.4
46,244 + RR42_RS21035 0.77 -0.2
46,245 - RR42_RS21035 0.77 +0.7
46,363 - +0.1
46,633 + RR42_RS21040 0.82 -1.3
46,724 - -0.1
46,736 - -1.0
46,736 - -1.5
46,908 - +0.6
47,173 + +1.3
47,174 - -0.2
47,174 - -0.2
47,335 - +0.3
47,533 + RR42_RS21045 0.48 +0.9
47,533 + RR42_RS21045 0.48 -0.3
47,534 - RR42_RS21045 0.48 -0.3
47,534 - RR42_RS21045 0.48 +0.6
47,587 + RR42_RS21045 0.60 +0.8
47,587 + RR42_RS21045 0.60 -1.4
47,587 + RR42_RS21045 0.60 +0.0
47,587 + RR42_RS21045 0.60 -0.6
47,587 + RR42_RS21045 0.60 +0.8
47,588 - RR42_RS21045 0.60 -0.7
47,588 - RR42_RS21045 0.60 -1.1
47,588 - RR42_RS21045 0.60 +0.1
47,606 - RR42_RS21045 0.64 -1.4
47,606 - RR42_RS21045 0.64 +0.4
47,606 - RR42_RS21045 0.64 +0.2

Or see this region's nucleotide sequence