Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20695 and RR42_RS20700 are separated by 279 nucleotides RR42_RS20700 and RR42_RS20705 are separated by 21 nucleotides RR42_RS20705 and RR42_RS20710 are separated by 161 nucleotides
RR42_RS20695: RR42_RS20695 - TetR family transcriptional regulator, at 4,493,682 to 4,494,617
_RS20695
RR42_RS20700: RR42_RS20700 - GMC family oxidoreductase, at 4,494,897 to 4,496,492
_RS20700
RR42_RS20705: RR42_RS20705 - hypothetical protein, at 4,496,514 to 4,497,098
_RS20705
RR42_RS20710: RR42_RS20710 - AraC family transcriptional regulator, at 4,497,260 to 4,498,363
_RS20710
Position (kb) 4494
4495
4496
4497 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4494.202 kb on + strand, within RR42_RS20695 at 4494.203 kb on - strand, within RR42_RS20695 at 4494.217 kb on + strand, within RR42_RS20695 at 4494.217 kb on + strand, within RR42_RS20695 at 4494.218 kb on - strand, within RR42_RS20695 at 4494.240 kb on - strand, within RR42_RS20695 at 4494.248 kb on - strand, within RR42_RS20695 at 4494.473 kb on - strand, within RR42_RS20695 at 4494.473 kb on - strand, within RR42_RS20695 at 4494.646 kb on + strand at 4494.646 kb on + strand at 4494.647 kb on - strand at 4494.647 kb on - strand at 4494.719 kb on + strand at 4494.720 kb on - strand at 4494.720 kb on - strand at 4494.720 kb on - strand at 4494.720 kb on - strand at 4494.720 kb on - strand at 4495.178 kb on - strand, within RR42_RS20700 at 4495.486 kb on + strand, within RR42_RS20700 at 4495.486 kb on + strand, within RR42_RS20700 at 4495.487 kb on - strand, within RR42_RS20700 at 4495.487 kb on - strand, within RR42_RS20700 at 4495.555 kb on + strand, within RR42_RS20700 at 4495.556 kb on - strand, within RR42_RS20700 at 4495.702 kb on + strand, within RR42_RS20700 at 4495.703 kb on - strand, within RR42_RS20700 at 4495.703 kb on - strand, within RR42_RS20700 at 4496.473 kb on + strand at 4496.473 kb on + strand at 4496.474 kb on - strand at 4496.474 kb on - strand at 4496.474 kb on - strand at 4496.474 kb on - strand at 4496.474 kb on - strand at 4496.505 kb on + strand at 4496.590 kb on + strand, within RR42_RS20705 at 4496.590 kb on + strand, within RR42_RS20705 at 4496.590 kb on + strand, within RR42_RS20705 at 4496.591 kb on - strand, within RR42_RS20705 at 4496.591 kb on - strand, within RR42_RS20705 at 4496.593 kb on + strand, within RR42_RS20705 at 4496.594 kb on - strand, within RR42_RS20705 at 4496.847 kb on + strand, within RR42_RS20705 at 4496.847 kb on + strand, within RR42_RS20705 at 4496.848 kb on - strand, within RR42_RS20705 at 4497.320 kb on + strand at 4497.320 kb on + strand at 4497.321 kb on - strand at 4497.321 kb on - strand at 4497.321 kb on - strand at 4497.321 kb on - strand at 4497.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,494,202 + RR42_RS20695 0.56 -0.3 4,494,203 - RR42_RS20695 0.56 +1.0 4,494,217 + RR42_RS20695 0.57 +0.5 4,494,217 + RR42_RS20695 0.57 -1.2 4,494,218 - RR42_RS20695 0.57 +0.9 4,494,240 - RR42_RS20695 0.60 -0.3 4,494,248 - RR42_RS20695 0.60 -0.6 4,494,473 - RR42_RS20695 0.85 +0.4 4,494,473 - RR42_RS20695 0.85 +0.7 4,494,646 + -0.2 4,494,646 + -1.0 4,494,647 - +0.1 4,494,647 - -2.6 4,494,719 + +1.4 4,494,720 - +0.1 4,494,720 - -0.0 4,494,720 - -0.2 4,494,720 - +1.6 4,494,720 - +0.0 4,495,178 - RR42_RS20700 0.18 +0.4 4,495,486 + RR42_RS20700 0.37 +0.5 4,495,486 + RR42_RS20700 0.37 +0.9 4,495,487 - RR42_RS20700 0.37 -0.3 4,495,487 - RR42_RS20700 0.37 -0.1 4,495,555 + RR42_RS20700 0.41 +0.7 4,495,556 - RR42_RS20700 0.41 +2.5 4,495,702 + RR42_RS20700 0.50 -0.7 4,495,703 - RR42_RS20700 0.51 +0.8 4,495,703 - RR42_RS20700 0.51 +0.7 4,496,473 + -0.9 4,496,473 + +0.1 4,496,474 - -0.9 4,496,474 - -0.3 4,496,474 - -1.7 4,496,474 - -0.5 4,496,474 - +0.3 4,496,505 + -0.2 4,496,590 + RR42_RS20705 0.13 -0.1 4,496,590 + RR42_RS20705 0.13 -0.1 4,496,590 + RR42_RS20705 0.13 +1.2 4,496,591 - RR42_RS20705 0.13 +0.0 4,496,591 - RR42_RS20705 0.13 +0.8 4,496,593 + RR42_RS20705 0.14 -0.9 4,496,594 - RR42_RS20705 0.14 +0.1 4,496,847 + RR42_RS20705 0.57 +1.0 4,496,847 + RR42_RS20705 0.57 +0.1 4,496,848 - RR42_RS20705 0.57 -1.7 4,497,320 + -0.4 4,497,320 + -1.5 4,497,321 - -1.6 4,497,321 - -0.1 4,497,321 - +1.6 4,497,321 - -0.7 4,497,321 - +0.3
Or see this region's nucleotide sequence