Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20605 and RR42_RS20610 are separated by 138 nucleotides RR42_RS20610 and RR42_RS20615 are separated by 16 nucleotides RR42_RS20615 and RR42_RS20620 are separated by 242 nucleotides
RR42_RS20605: RR42_RS20605 - membrane protein, at 4,471,618 to 4,472,676
_RS20605
RR42_RS20610: RR42_RS20610 - tripartite tricarboxylate transporter TctA, at 4,472,815 to 4,474,329
_RS20610
RR42_RS20615: RR42_RS20615 - ripartite tricarboxylate transport (TTT) family transporter, at 4,474,346 to 4,474,819
_RS20615
RR42_RS20620: RR42_RS20620 - C4-dicarboxylate ABC transporter substrate-binding protein, at 4,475,062 to 4,475,994
_RS20620
Position (kb) 4472
4473
4474
4475 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4471.874 kb on + strand, within RR42_RS20605 at 4471.874 kb on + strand, within RR42_RS20605 at 4471.909 kb on - strand, within RR42_RS20605 at 4472.156 kb on + strand, within RR42_RS20605 at 4472.156 kb on + strand, within RR42_RS20605 at 4472.156 kb on + strand, within RR42_RS20605 at 4472.156 kb on + strand, within RR42_RS20605 at 4472.157 kb on - strand, within RR42_RS20605 at 4472.321 kb on + strand, within RR42_RS20605 at 4472.321 kb on + strand, within RR42_RS20605 at 4472.322 kb on - strand, within RR42_RS20605 at 4472.322 kb on - strand, within RR42_RS20605 at 4472.322 kb on - strand, within RR42_RS20605 at 4472.322 kb on - strand, within RR42_RS20605 at 4472.412 kb on + strand, within RR42_RS20605 at 4472.412 kb on + strand, within RR42_RS20605 at 4472.412 kb on + strand, within RR42_RS20605 at 4472.412 kb on + strand, within RR42_RS20605 at 4472.415 kb on - strand, within RR42_RS20605 at 4472.459 kb on + strand, within RR42_RS20605 at 4472.728 kb on + strand at 4472.728 kb on + strand at 4472.729 kb on - strand at 4473.119 kb on + strand, within RR42_RS20610 at 4473.120 kb on - strand, within RR42_RS20610 at 4473.120 kb on - strand, within RR42_RS20610 at 4473.242 kb on + strand, within RR42_RS20610 at 4473.498 kb on - strand, within RR42_RS20610 at 4473.753 kb on - strand, within RR42_RS20610 at 4474.112 kb on + strand, within RR42_RS20610 at 4474.113 kb on - strand, within RR42_RS20610 at 4474.125 kb on - strand, within RR42_RS20610 at 4474.125 kb on - strand, within RR42_RS20610 at 4474.127 kb on + strand, within RR42_RS20610 at 4474.128 kb on - strand, within RR42_RS20610 at 4474.128 kb on - strand, within RR42_RS20610 at 4474.318 kb on - strand at 4474.323 kb on + strand at 4474.324 kb on - strand at 4474.420 kb on + strand, within RR42_RS20615 at 4474.420 kb on + strand, within RR42_RS20615 at 4474.421 kb on - strand, within RR42_RS20615 at 4474.421 kb on - strand, within RR42_RS20615 at 4474.421 kb on - strand, within RR42_RS20615 at 4474.764 kb on + strand, within RR42_RS20615 at 4474.764 kb on + strand, within RR42_RS20615 at 4474.764 kb on + strand, within RR42_RS20615 at 4474.922 kb on + strand at 4474.922 kb on + strand at 4474.923 kb on - strand at 4474.923 kb on - strand at 4475.063 kb on + strand at 4475.063 kb on + strand at 4475.063 kb on + strand at 4475.063 kb on + strand at 4475.064 kb on - strand at 4475.286 kb on - strand, within RR42_RS20620 at 4475.286 kb on - strand, within RR42_RS20620 at 4475.325 kb on + strand, within RR42_RS20620
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,471,874 + RR42_RS20605 0.24 +0.4 4,471,874 + RR42_RS20605 0.24 -0.5 4,471,909 - RR42_RS20605 0.27 +0.5 4,472,156 + RR42_RS20605 0.51 -0.7 4,472,156 + RR42_RS20605 0.51 +1.1 4,472,156 + RR42_RS20605 0.51 -1.2 4,472,156 + RR42_RS20605 0.51 -1.0 4,472,157 - RR42_RS20605 0.51 -0.9 4,472,321 + RR42_RS20605 0.66 -0.1 4,472,321 + RR42_RS20605 0.66 -0.3 4,472,322 - RR42_RS20605 0.66 +0.0 4,472,322 - RR42_RS20605 0.66 -0.6 4,472,322 - RR42_RS20605 0.66 -2.2 4,472,322 - RR42_RS20605 0.66 +0.4 4,472,412 + RR42_RS20605 0.75 -0.1 4,472,412 + RR42_RS20605 0.75 -0.1 4,472,412 + RR42_RS20605 0.75 +0.0 4,472,412 + RR42_RS20605 0.75 -1.8 4,472,415 - RR42_RS20605 0.75 +0.0 4,472,459 + RR42_RS20605 0.79 -0.4 4,472,728 + -1.8 4,472,728 + -0.1 4,472,729 - +0.0 4,473,119 + RR42_RS20610 0.20 +0.1 4,473,120 - RR42_RS20610 0.20 +0.3 4,473,120 - RR42_RS20610 0.20 +0.9 4,473,242 + RR42_RS20610 0.28 +1.8 4,473,498 - RR42_RS20610 0.45 +0.6 4,473,753 - RR42_RS20610 0.62 +0.4 4,474,112 + RR42_RS20610 0.86 +1.1 4,474,113 - RR42_RS20610 0.86 +0.8 4,474,125 - RR42_RS20610 0.86 +0.6 4,474,125 - RR42_RS20610 0.86 -1.6 4,474,127 + RR42_RS20610 0.87 +1.1 4,474,128 - RR42_RS20610 0.87 +1.0 4,474,128 - RR42_RS20610 0.87 -0.2 4,474,318 - +0.4 4,474,323 + -0.5 4,474,324 - -0.9 4,474,420 + RR42_RS20615 0.16 +0.1 4,474,420 + RR42_RS20615 0.16 -1.0 4,474,421 - RR42_RS20615 0.16 +2.0 4,474,421 - RR42_RS20615 0.16 -0.9 4,474,421 - RR42_RS20615 0.16 -0.8 4,474,764 + RR42_RS20615 0.88 -0.4 4,474,764 + RR42_RS20615 0.88 -1.7 4,474,764 + RR42_RS20615 0.88 +0.1 4,474,922 + +0.2 4,474,922 + +0.0 4,474,923 - +0.4 4,474,923 - -0.6 4,475,063 + -0.2 4,475,063 + +0.7 4,475,063 + -0.3 4,475,063 + +0.4 4,475,064 - +0.4 4,475,286 - RR42_RS20620 0.24 -1.2 4,475,286 - RR42_RS20620 0.24 +0.8 4,475,325 + RR42_RS20620 0.28 -3.1
Or see this region's nucleotide sequence