Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20200 and RR42_RS20205 are separated by 52 nucleotides RR42_RS20205 and RR42_RS20210 are separated by 68 nucleotides RR42_RS20210 and RR42_RS20215 are separated by 0 nucleotides
RR42_RS20200: RR42_RS20200 - chromosome partitioning protein ParB, at 4,368,708 to 4,369,610
_RS20200
RR42_RS20205: RR42_RS20205 - chromosome partitioning protein, at 4,369,663 to 4,370,436
_RS20205
RR42_RS20210: RR42_RS20210 - 16S rRNA methyltransferase, at 4,370,505 to 4,371,212
_RS20210
RR42_RS20215: RR42_RS20215 - tRNA uridine 5-carboxymethylaminomethyl modification protein, at 4,371,213 to 4,373,153
_RS20215
Position (kb)
4369
4370
4371 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4368.690 kb on - strand at 4369.624 kb on - strand at 4369.764 kb on - strand, within RR42_RS20205 at 4369.947 kb on + strand, within RR42_RS20205 at 4369.947 kb on + strand, within RR42_RS20205 at 4369.948 kb on - strand, within RR42_RS20205 at 4369.983 kb on - strand, within RR42_RS20205 at 4370.426 kb on - strand at 4370.437 kb on - strand at 4370.437 kb on - strand at 4370.437 kb on - strand at 4371.062 kb on - strand, within RR42_RS20210 at 4371.062 kb on - strand, within RR42_RS20210 at 4371.062 kb on - strand, within RR42_RS20210 at 4371.062 kb on - strand, within RR42_RS20210 at 4371.095 kb on - strand, within RR42_RS20210 at 4371.246 kb on - strand at 4371.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,368,690 - -1.2 4,369,624 - -1.5 4,369,764 - RR42_RS20205 0.13 -1.9 4,369,947 + RR42_RS20205 0.37 -0.2 4,369,947 + RR42_RS20205 0.37 -0.4 4,369,948 - RR42_RS20205 0.37 +0.2 4,369,983 - RR42_RS20205 0.41 +0.3 4,370,426 - -1.2 4,370,437 - -4.2 4,370,437 - -0.7 4,370,437 - -0.8 4,371,062 - RR42_RS20210 0.79 -2.3 4,371,062 - RR42_RS20210 0.79 -0.5 4,371,062 - RR42_RS20210 0.79 +0.4 4,371,062 - RR42_RS20210 0.79 -1.5 4,371,095 - RR42_RS20210 0.83 -0.8 4,371,246 - +0.7 4,371,398 - -2.0
Or see this region's nucleotide sequence