Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19895 and RR42_RS19900 are separated by 533 nucleotides RR42_RS19900 and RR42_RS19905 are separated by 100 nucleotides RR42_RS19905 and RR42_RS19910 are separated by 184 nucleotides
RR42_RS19895: RR42_RS19895 - elongation factor GreAB, at 4,297,646 to 4,298,065
_RS19895
RR42_RS19900: RR42_RS19900 - MerR family transcriptional regulator, at 4,298,599 to 4,299,039
_RS19900
RR42_RS19905: RR42_RS19905 - S-adenosylmethionine decarboxylase, at 4,299,140 to 4,299,517
_RS19905
RR42_RS19910: RR42_RS19910 - membrane protein, at 4,299,702 to 4,301,222
_RS19910
Position (kb) 4298
4299
4300 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4297.647 kb on + strand at 4297.647 kb on + strand at 4297.648 kb on - strand at 4297.648 kb on - strand at 4297.648 kb on - strand at 4297.649 kb on + strand at 4297.649 kb on + strand at 4297.649 kb on + strand at 4297.649 kb on + strand at 4297.649 kb on + strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.656 kb on + strand at 4297.656 kb on + strand at 4297.656 kb on + strand at 4297.656 kb on + strand at 4297.657 kb on - strand at 4297.657 kb on - strand at 4297.732 kb on - strand, within RR42_RS19895 at 4298.031 kb on + strand at 4298.079 kb on + strand at 4298.079 kb on + strand at 4298.080 kb on - strand at 4298.080 kb on - strand at 4298.080 kb on - strand at 4298.283 kb on + strand at 4298.549 kb on + strand at 4298.561 kb on - strand at 4298.561 kb on - strand at 4298.561 kb on - strand at 4298.561 kb on - strand at 4298.565 kb on + strand at 4298.600 kb on + strand at 4298.600 kb on + strand at 4298.600 kb on + strand at 4298.710 kb on - strand, within RR42_RS19900 at 4299.094 kb on + strand at 4299.106 kb on + strand at 4299.107 kb on - strand at 4299.178 kb on + strand, within RR42_RS19905 at 4299.178 kb on + strand, within RR42_RS19905 at 4299.179 kb on - strand, within RR42_RS19905 at 4299.179 kb on - strand, within RR42_RS19905 at 4299.179 kb on - strand, within RR42_RS19905 at 4299.273 kb on + strand, within RR42_RS19905 at 4299.286 kb on + strand, within RR42_RS19905 at 4299.287 kb on - strand, within RR42_RS19905 at 4299.299 kb on - strand, within RR42_RS19905 at 4299.299 kb on - strand, within RR42_RS19905 at 4299.403 kb on - strand, within RR42_RS19905 at 4299.682 kb on + strand at 4299.682 kb on + strand at 4299.682 kb on + strand at 4299.682 kb on + strand at 4299.683 kb on - strand at 4299.835 kb on + strand at 4299.835 kb on + strand at 4299.876 kb on - strand, within RR42_RS19910
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,297,647 + +0.2 4,297,647 + -2.2 4,297,648 - +0.1 4,297,648 - +1.2 4,297,648 - -0.6 4,297,649 + -1.2 4,297,649 + -0.2 4,297,649 + -0.6 4,297,649 + -3.1 4,297,649 + -2.7 4,297,650 - -0.4 4,297,650 - -0.3 4,297,650 - -0.2 4,297,650 - -0.6 4,297,650 - +0.1 4,297,650 - -1.5 4,297,650 - -0.9 4,297,650 - -0.6 4,297,650 - +1.2 4,297,656 + +1.1 4,297,656 + -0.2 4,297,656 + -3.4 4,297,656 + +0.7 4,297,657 - -0.7 4,297,657 - -0.9 4,297,732 - RR42_RS19895 0.20 +0.8 4,298,031 + -0.2 4,298,079 + -1.0 4,298,079 + +0.1 4,298,080 - -0.9 4,298,080 - -0.3 4,298,080 - -0.1 4,298,283 + -0.5 4,298,549 + -0.4 4,298,561 - +0.3 4,298,561 - -0.9 4,298,561 - +0.7 4,298,561 - -1.6 4,298,565 + +0.6 4,298,600 + -0.5 4,298,600 + -0.9 4,298,600 + +0.1 4,298,710 - RR42_RS19900 0.25 -1.4 4,299,094 + -0.7 4,299,106 + -1.0 4,299,107 - +0.6 4,299,178 + RR42_RS19905 0.10 -0.7 4,299,178 + RR42_RS19905 0.10 -1.2 4,299,179 - RR42_RS19905 0.10 -1.4 4,299,179 - RR42_RS19905 0.10 +0.3 4,299,179 - RR42_RS19905 0.10 -0.8 4,299,273 + RR42_RS19905 0.35 -0.1 4,299,286 + RR42_RS19905 0.39 -1.4 4,299,287 - RR42_RS19905 0.39 -0.8 4,299,299 - RR42_RS19905 0.42 -2.0 4,299,299 - RR42_RS19905 0.42 +0.5 4,299,403 - RR42_RS19905 0.70 -0.8 4,299,682 + +0.2 4,299,682 + -0.6 4,299,682 + -1.5 4,299,682 + +1.2 4,299,683 - +0.3 4,299,835 + +0.3 4,299,835 + -3.2 4,299,876 - RR42_RS19910 0.11 -0.2
Or see this region's nucleotide sequence