Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19680

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19675 and RR42_RS19680 are separated by 175 nucleotidesRR42_RS19680 and RR42_RS19685 are separated by 130 nucleotidesRR42_RS19685 and RR42_RS19690 are separated by 63 nucleotides RR42_RS19675: RR42_RS19675 - SoxA protein, at 4,251,770 to 4,252,600 _RS19675 RR42_RS19680: RR42_RS19680 - hypothetical protein, at 4,252,776 to 4,253,231 _RS19680 RR42_RS19685: RR42_RS19685 - thiosulfate oxidation carrier complex protein SoxZ, at 4,253,362 to 4,253,673 _RS19685 RR42_RS19690: RR42_RS19690 - Tat pathway signal protein, at 4,253,737 to 4,254,192 _RS19690 Position (kb) 4252 4253 4254Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4251.795 kb on + strandat 4251.795 kb on + strandat 4251.796 kb on - strandat 4251.796 kb on - strandat 4251.796 kb on - strandat 4251.796 kb on - strandat 4251.858 kb on + strand, within RR42_RS19675at 4251.897 kb on + strand, within RR42_RS19675at 4251.898 kb on - strand, within RR42_RS19675at 4251.920 kb on + strand, within RR42_RS19675at 4251.920 kb on + strand, within RR42_RS19675at 4251.961 kb on - strand, within RR42_RS19675at 4251.961 kb on - strand, within RR42_RS19675at 4251.961 kb on - strand, within RR42_RS19675at 4252.060 kb on - strand, within RR42_RS19675at 4252.102 kb on - strand, within RR42_RS19675at 4252.269 kb on + strand, within RR42_RS19675at 4252.664 kb on + strandat 4252.664 kb on + strandat 4252.664 kb on + strandat 4252.665 kb on - strandat 4252.665 kb on - strandat 4252.733 kb on + strandat 4252.743 kb on + strandat 4252.743 kb on + strandat 4252.744 kb on - strandat 4252.744 kb on - strandat 4252.758 kb on + strandat 4252.763 kb on - strandat 4252.763 kb on - strandat 4252.773 kb on + strandat 4252.774 kb on - strandat 4252.774 kb on - strandat 4252.777 kb on + strandat 4252.777 kb on + strandat 4252.778 kb on - strandat 4252.787 kb on + strandat 4252.788 kb on - strandat 4252.788 kb on - strandat 4252.788 kb on - strandat 4252.789 kb on + strandat 4252.789 kb on + strandat 4252.789 kb on + strandat 4252.789 kb on + strandat 4252.789 kb on + strandat 4252.790 kb on - strandat 4252.790 kb on - strandat 4252.790 kb on - strandat 4252.790 kb on - strandat 4252.790 kb on - strandat 4252.790 kb on - strandat 4252.790 kb on - strandat 4252.795 kb on + strandat 4252.795 kb on + strandat 4252.795 kb on + strandat 4252.796 kb on - strandat 4252.796 kb on - strandat 4252.796 kb on - strandat 4252.796 kb on - strandat 4252.842 kb on + strand, within RR42_RS19680at 4252.843 kb on - strand, within RR42_RS19680at 4252.898 kb on + strand, within RR42_RS19680at 4252.899 kb on - strand, within RR42_RS19680at 4253.238 kb on + strandat 4253.304 kb on + strandat 4253.305 kb on - strandat 4253.506 kb on + strand, within RR42_RS19685at 4253.507 kb on - strand, within RR42_RS19685at 4253.507 kb on - strand, within RR42_RS19685at 4253.653 kb on + strandat 4253.653 kb on + strandat 4253.654 kb on - strandat 4253.654 kb on - strandat 4253.693 kb on - strandat 4253.786 kb on + strand, within RR42_RS19690at 4253.787 kb on - strand, within RR42_RS19690at 4253.787 kb on - strand, within RR42_RS19690at 4253.816 kb on + strand, within RR42_RS19690at 4253.817 kb on - strand, within RR42_RS19690at 4254.169 kb on + strandat 4254.169 kb on + strandat 4254.170 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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4,251,795 + -1.1
4,251,795 + +0.5
4,251,796 - -0.2
4,251,796 - -0.8
4,251,796 - -1.7
4,251,796 - -0.2
4,251,858 + RR42_RS19675 0.11 +0.0
4,251,897 + RR42_RS19675 0.15 +0.0
4,251,898 - RR42_RS19675 0.15 +0.1
4,251,920 + RR42_RS19675 0.18 +0.7
4,251,920 + RR42_RS19675 0.18 -0.1
4,251,961 - RR42_RS19675 0.23 -1.4
4,251,961 - RR42_RS19675 0.23 -2.0
4,251,961 - RR42_RS19675 0.23 +0.7
4,252,060 - RR42_RS19675 0.35 -0.1
4,252,102 - RR42_RS19675 0.40 -0.3
4,252,269 + RR42_RS19675 0.60 +0.9
4,252,664 + -0.3
4,252,664 + -3.4
4,252,664 + +0.3
4,252,665 - -0.5
4,252,665 - +2.1
4,252,733 + -2.3
4,252,743 + +0.2
4,252,743 + +0.4
4,252,744 - +0.2
4,252,744 - -1.2
4,252,758 + -0.0
4,252,763 - -2.5
4,252,763 - +0.5
4,252,773 + +0.3
4,252,774 - +0.2
4,252,774 - +0.4
4,252,777 + -0.7
4,252,777 + -1.0
4,252,778 - -2.2
4,252,787 + -0.3
4,252,788 - +0.5
4,252,788 - +0.7
4,252,788 - +0.0
4,252,789 + +2.5
4,252,789 + -0.4
4,252,789 + +0.0
4,252,789 + -0.4
4,252,789 + -0.7
4,252,790 - +0.0
4,252,790 - -0.2
4,252,790 - -0.7
4,252,790 - +0.6
4,252,790 - -0.1
4,252,790 - +1.1
4,252,790 - +0.8
4,252,795 + -0.7
4,252,795 + +0.6
4,252,795 + +0.2
4,252,796 - -1.2
4,252,796 - +0.6
4,252,796 - -0.3
4,252,796 - +0.5
4,252,842 + RR42_RS19680 0.14 -1.9
4,252,843 - RR42_RS19680 0.15 -1.5
4,252,898 + RR42_RS19680 0.27 -0.1
4,252,899 - RR42_RS19680 0.27 -0.3
4,253,238 + -0.5
4,253,304 + -1.0
4,253,305 - +0.0
4,253,506 + RR42_RS19685 0.46 +0.1
4,253,507 - RR42_RS19685 0.46 +0.0
4,253,507 - RR42_RS19685 0.46 +3.6
4,253,653 + -0.7
4,253,653 + -1.8
4,253,654 - +0.6
4,253,654 - -1.8
4,253,693 - +0.3
4,253,786 + RR42_RS19690 0.11 -1.0
4,253,787 - RR42_RS19690 0.11 +1.0
4,253,787 - RR42_RS19690 0.11 -0.7
4,253,816 + RR42_RS19690 0.17 -1.0
4,253,817 - RR42_RS19690 0.18 -0.7
4,254,169 + -0.9
4,254,169 + -0.4
4,254,170 - -0.2

Or see this region's nucleotide sequence