Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19640 and RR42_RS19645 are separated by 864 nucleotides RR42_RS19645 and RR42_RS19650 are separated by 76 nucleotides
RR42_RS19640: RR42_RS19640 - hypothetical protein, at 4,245,133 to 4,246,122
_RS19640
RR42_RS19645: RR42_RS19645 - DNA topoisomerase, at 4,246,987 to 4,247,322
_RS19645
RR42_RS19650: RR42_RS19650 - sulfate transporter, at 4,247,399 to 4,247,836
_RS19650
Position (kb) 4246
4247
4248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4245.995 kb on + strand, within RR42_RS19640 at 4246.056 kb on + strand at 4246.057 kb on - strand at 4246.057 kb on - strand at 4246.069 kb on + strand at 4246.069 kb on + strand at 4246.069 kb on + strand at 4246.069 kb on + strand at 4246.069 kb on + strand at 4246.070 kb on - strand at 4246.070 kb on - strand at 4246.070 kb on - strand at 4246.073 kb on + strand at 4246.074 kb on - strand at 4246.074 kb on - strand at 4246.099 kb on - strand at 4246.197 kb on + strand at 4246.198 kb on - strand at 4246.207 kb on - strand at 4246.207 kb on - strand at 4246.229 kb on + strand at 4246.230 kb on - strand at 4246.230 kb on - strand at 4246.312 kb on + strand at 4246.312 kb on + strand at 4246.331 kb on + strand at 4246.332 kb on - strand at 4246.405 kb on + strand at 4246.405 kb on + strand at 4246.406 kb on - strand at 4246.442 kb on - strand at 4246.442 kb on - strand at 4246.483 kb on - strand at 4246.489 kb on - strand at 4246.489 kb on - strand at 4246.549 kb on + strand at 4246.549 kb on + strand at 4246.549 kb on + strand at 4246.549 kb on + strand at 4246.550 kb on - strand at 4246.550 kb on - strand at 4246.550 kb on - strand at 4246.556 kb on - strand at 4246.612 kb on + strand at 4246.667 kb on + strand at 4246.668 kb on - strand at 4246.722 kb on + strand at 4246.723 kb on - strand at 4246.723 kb on - strand at 4246.723 kb on - strand at 4246.782 kb on + strand at 4246.782 kb on + strand at 4246.782 kb on + strand at 4246.782 kb on + strand at 4246.783 kb on - strand at 4246.783 kb on - strand at 4246.783 kb on - strand at 4246.783 kb on - strand at 4246.783 kb on - strand at 4246.783 kb on - strand at 4246.784 kb on + strand at 4246.784 kb on + strand at 4246.784 kb on + strand at 4246.785 kb on - strand at 4246.785 kb on - strand at 4246.785 kb on - strand at 4246.871 kb on + strand at 4246.872 kb on - strand at 4246.877 kb on + strand at 4246.877 kb on + strand at 4246.878 kb on - strand at 4246.878 kb on - strand at 4246.905 kb on + strand at 4246.937 kb on - strand at 4247.225 kb on + strand, within RR42_RS19645 at 4247.225 kb on + strand, within RR42_RS19645 at 4247.226 kb on - strand, within RR42_RS19645 at 4247.226 kb on - strand, within RR42_RS19645 at 4247.348 kb on - strand at 4247.352 kb on - strand at 4247.367 kb on + strand at 4247.367 kb on + strand at 4247.367 kb on + strand at 4247.368 kb on - strand at 4247.368 kb on - strand at 4247.368 kb on - strand at 4247.368 kb on - strand at 4247.406 kb on + strand at 4247.550 kb on + strand, within RR42_RS19650 at 4247.551 kb on - strand, within RR42_RS19650 at 4247.551 kb on - strand, within RR42_RS19650 at 4247.551 kb on - strand, within RR42_RS19650 at 4247.616 kb on - strand, within RR42_RS19650 at 4247.644 kb on + strand, within RR42_RS19650 at 4247.686 kb on + strand, within RR42_RS19650 at 4247.686 kb on + strand, within RR42_RS19650 at 4247.687 kb on - strand, within RR42_RS19650 at 4247.687 kb on - strand, within RR42_RS19650 at 4247.687 kb on - strand, within RR42_RS19650 at 4247.687 kb on - strand, within RR42_RS19650 at 4247.824 kb on + strand at 4247.824 kb on + strand at 4247.824 kb on + strand at 4247.824 kb on + strand at 4247.824 kb on + strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.836 kb on + strand at 4247.836 kb on + strand at 4247.837 kb on - strand at 4247.837 kb on - strand at 4247.837 kb on - strand at 4247.837 kb on - strand at 4247.854 kb on + strand at 4247.854 kb on + strand at 4247.854 kb on + strand at 4247.854 kb on + strand at 4247.855 kb on - strand at 4247.855 kb on - strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.957 kb on - strand at 4247.957 kb on - strand at 4247.981 kb on + strand at 4247.981 kb on + strand at 4247.982 kb on - strand at 4247.999 kb on + strand at 4248.099 kb on - strand at 4248.099 kb on - strand at 4248.126 kb on - strand at 4248.126 kb on - strand at 4248.264 kb on + strand at 4248.264 kb on + strand at 4248.264 kb on + strand at 4248.264 kb on + strand at 4248.265 kb on - strand at 4248.265 kb on - strand at 4248.265 kb on - strand at 4248.298 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,245,995 + RR42_RS19640 0.87 +1.2 4,246,056 + -0.7 4,246,057 - +2.5 4,246,057 - -0.1 4,246,069 + +0.2 4,246,069 + -0.0 4,246,069 + -0.8 4,246,069 + +0.9 4,246,069 + -0.0 4,246,070 - +0.1 4,246,070 - -3.1 4,246,070 - +0.3 4,246,073 + -0.3 4,246,074 - -1.2 4,246,074 - +0.4 4,246,099 - +1.0 4,246,197 + +0.0 4,246,198 - +0.4 4,246,207 - +0.4 4,246,207 - +0.3 4,246,229 + -0.6 4,246,230 - -1.0 4,246,230 - -0.7 4,246,312 + -1.7 4,246,312 + +0.0 4,246,331 + +0.3 4,246,332 - -0.1 4,246,405 + -1.5 4,246,405 + +0.1 4,246,406 - -1.6 4,246,442 - +0.6 4,246,442 - -1.2 4,246,483 - +0.8 4,246,489 - -0.2 4,246,489 - -1.5 4,246,549 + -1.4 4,246,549 + +1.5 4,246,549 + +0.3 4,246,549 + -0.1 4,246,550 - +0.7 4,246,550 - -0.3 4,246,550 - -0.4 4,246,556 - +1.6 4,246,612 + -0.2 4,246,667 + +0.2 4,246,668 - -0.1 4,246,722 + +0.1 4,246,723 - +0.3 4,246,723 - +0.5 4,246,723 - +1.5 4,246,782 + +0.6 4,246,782 + -0.3 4,246,782 + +0.6 4,246,782 + -0.7 4,246,783 - +0.3 4,246,783 - +0.2 4,246,783 - -1.4 4,246,783 - -1.0 4,246,783 - -0.3 4,246,783 - -0.1 4,246,784 + +0.2 4,246,784 + -0.8 4,246,784 + -1.3 4,246,785 - -1.2 4,246,785 - +0.7 4,246,785 - -0.5 4,246,871 + -0.1 4,246,872 - +0.0 4,246,877 + -0.1 4,246,877 + -0.3 4,246,878 - -0.1 4,246,878 - +0.4 4,246,905 + +1.1 4,246,937 - +0.1 4,247,225 + RR42_RS19645 0.71 +1.1 4,247,225 + RR42_RS19645 0.71 -0.0 4,247,226 - RR42_RS19645 0.71 +0.2 4,247,226 - RR42_RS19645 0.71 +1.0 4,247,348 - -0.1 4,247,352 - -0.9 4,247,367 + -2.1 4,247,367 + +1.1 4,247,367 + -1.8 4,247,368 - -0.4 4,247,368 - +0.5 4,247,368 - -0.2 4,247,368 - +0.7 4,247,406 + +0.1 4,247,550 + RR42_RS19650 0.34 -0.7 4,247,551 - RR42_RS19650 0.35 +1.0 4,247,551 - RR42_RS19650 0.35 +0.8 4,247,551 - RR42_RS19650 0.35 -0.0 4,247,616 - RR42_RS19650 0.50 -0.5 4,247,644 + RR42_RS19650 0.56 -0.3 4,247,686 + RR42_RS19650 0.66 +0.1 4,247,686 + RR42_RS19650 0.66 -0.7 4,247,687 - RR42_RS19650 0.66 -0.2 4,247,687 - RR42_RS19650 0.66 +1.3 4,247,687 - RR42_RS19650 0.66 -0.5 4,247,687 - RR42_RS19650 0.66 +0.7 4,247,824 + +0.3 4,247,824 + -0.2 4,247,824 + +0.4 4,247,824 + -0.1 4,247,824 + +1.9 4,247,825 - -2.3 4,247,825 - +0.5 4,247,825 - +0.6 4,247,825 - -0.4 4,247,825 - +0.6 4,247,825 - -0.3 4,247,825 - +1.3 4,247,825 - +0.2 4,247,825 - -0.4 4,247,825 - -1.0 4,247,825 - -0.1 4,247,825 - -1.4 4,247,836 + -1.5 4,247,836 + -0.4 4,247,837 - -1.2 4,247,837 - +0.1 4,247,837 - -2.9 4,247,837 - -0.8 4,247,854 + +0.8 4,247,854 + -2.3 4,247,854 + -0.8 4,247,854 + -0.6 4,247,855 - +0.0 4,247,855 - +0.4 4,247,927 + +0.3 4,247,927 + +0.2 4,247,927 + -2.2 4,247,927 + +2.0 4,247,927 + -0.1 4,247,927 + -0.2 4,247,928 - +0.5 4,247,928 - -0.5 4,247,928 - +0.3 4,247,928 - +0.0 4,247,928 - -0.2 4,247,928 - +0.1 4,247,928 - +0.3 4,247,928 - +0.3 4,247,928 - -1.0 4,247,957 - -1.1 4,247,957 - +0.9 4,247,981 + +0.4 4,247,981 + -0.9 4,247,982 - +0.9 4,247,999 + -0.7 4,248,099 - +0.7 4,248,099 - -1.0 4,248,126 - -0.9 4,248,126 - +1.1 4,248,264 + -0.5 4,248,264 + -1.3 4,248,264 + -0.0 4,248,264 + -1.4 4,248,265 - +1.0 4,248,265 - +0.6 4,248,265 - -0.2 4,248,298 + -1.7
Or see this region's nucleotide sequence