Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19555

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19550 and RR42_RS19555 are separated by 138 nucleotidesRR42_RS19555 and RR42_RS19560 are separated by 59 nucleotidesRR42_RS19560 and RR42_RS19565 overlap by 4 nucleotides RR42_RS19550: RR42_RS19550 - hypothetical protein, at 4,226,496 to 4,227,194 _RS19550 RR42_RS19555: RR42_RS19555 - hypothetical protein, at 4,227,333 to 4,227,704 _RS19555 RR42_RS19560: RR42_RS19560 - hypothetical protein, at 4,227,764 to 4,228,375 _RS19560 RR42_RS19565: RR42_RS19565 - sugar nucleotide epimerase YfcH family protein, at 4,228,372 to 4,229,883 _RS19565 Position (kb) 4227 4228Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4226.433 kb on + strandat 4226.433 kb on + strandat 4226.433 kb on + strandat 4226.433 kb on + strandat 4226.434 kb on - strandat 4226.434 kb on - strandat 4226.434 kb on - strandat 4226.434 kb on - strandat 4226.576 kb on - strand, within RR42_RS19550at 4226.576 kb on - strand, within RR42_RS19550at 4226.631 kb on + strand, within RR42_RS19550at 4226.631 kb on + strand, within RR42_RS19550at 4226.737 kb on + strand, within RR42_RS19550at 4226.738 kb on - strand, within RR42_RS19550at 4226.738 kb on - strand, within RR42_RS19550at 4226.738 kb on - strand, within RR42_RS19550at 4226.895 kb on - strand, within RR42_RS19550at 4226.941 kb on - strand, within RR42_RS19550at 4226.962 kb on + strand, within RR42_RS19550at 4226.962 kb on + strand, within RR42_RS19550at 4226.963 kb on - strand, within RR42_RS19550at 4227.020 kb on + strand, within RR42_RS19550at 4227.021 kb on - strand, within RR42_RS19550at 4227.021 kb on - strand, within RR42_RS19550at 4227.115 kb on + strand, within RR42_RS19550at 4227.115 kb on + strand, within RR42_RS19550at 4227.209 kb on + strandat 4227.211 kb on + strandat 4227.237 kb on + strandat 4227.237 kb on + strandat 4227.237 kb on + strandat 4227.238 kb on - strandat 4227.257 kb on - strandat 4227.308 kb on + strandat 4227.332 kb on - strandat 4227.332 kb on - strandat 4227.661 kb on + strand, within RR42_RS19555at 4227.662 kb on - strand, within RR42_RS19555at 4227.671 kb on + strandat 4227.672 kb on - strandat 4227.673 kb on + strandat 4227.673 kb on + strandat 4227.673 kb on + strandat 4227.673 kb on + strandat 4227.673 kb on + strandat 4227.674 kb on - strandat 4227.674 kb on - strandat 4227.674 kb on - strandat 4227.674 kb on - strandat 4227.674 kb on - strandat 4227.752 kb on + strandat 4227.753 kb on - strandat 4227.753 kb on - strandat 4227.753 kb on - strandat 4227.783 kb on + strandat 4227.784 kb on - strandat 4227.784 kb on - strandat 4227.843 kb on + strand, within RR42_RS19560at 4227.843 kb on + strand, within RR42_RS19560at 4227.844 kb on - strand, within RR42_RS19560at 4227.855 kb on + strand, within RR42_RS19560at 4227.856 kb on - strand, within RR42_RS19560at 4227.895 kb on - strand, within RR42_RS19560at 4228.326 kb on + strandat 4228.326 kb on + strandat 4228.364 kb on + strandat 4228.443 kb on - strandat 4228.443 kb on - strandat 4228.624 kb on - strand, within RR42_RS19565at 4228.624 kb on - strand, within RR42_RS19565at 4228.625 kb on + strand, within RR42_RS19565at 4228.625 kb on + strand, within RR42_RS19565at 4228.626 kb on - strand, within RR42_RS19565at 4228.626 kb on - strand, within RR42_RS19565at 4228.626 kb on - strand, within RR42_RS19565at 4228.626 kb on - strand, within RR42_RS19565

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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4,226,433 + -0.5
4,226,433 + -0.6
4,226,433 + -1.7
4,226,433 + +0.5
4,226,434 - -0.6
4,226,434 - -0.3
4,226,434 - +0.6
4,226,434 - -2.6
4,226,576 - RR42_RS19550 0.11 -0.8
4,226,576 - RR42_RS19550 0.11 -0.4
4,226,631 + RR42_RS19550 0.19 +0.3
4,226,631 + RR42_RS19550 0.19 +0.5
4,226,737 + RR42_RS19550 0.34 -0.4
4,226,738 - RR42_RS19550 0.35 +0.4
4,226,738 - RR42_RS19550 0.35 -1.4
4,226,738 - RR42_RS19550 0.35 -1.7
4,226,895 - RR42_RS19550 0.57 +1.0
4,226,941 - RR42_RS19550 0.64 +0.3
4,226,962 + RR42_RS19550 0.67 +0.0
4,226,962 + RR42_RS19550 0.67 -2.1
4,226,963 - RR42_RS19550 0.67 -0.5
4,227,020 + RR42_RS19550 0.75 -0.5
4,227,021 - RR42_RS19550 0.75 -1.3
4,227,021 - RR42_RS19550 0.75 -1.8
4,227,115 + RR42_RS19550 0.89 +1.0
4,227,115 + RR42_RS19550 0.89 -0.0
4,227,209 + -1.2
4,227,211 + -0.1
4,227,237 + +0.1
4,227,237 + -0.6
4,227,237 + +0.1
4,227,238 - +0.6
4,227,257 - -3.4
4,227,308 + -1.0
4,227,332 - +1.2
4,227,332 - +1.1
4,227,661 + RR42_RS19555 0.88 -0.9
4,227,662 - RR42_RS19555 0.88 -1.4
4,227,671 + +0.1
4,227,672 - -0.6
4,227,673 + -0.6
4,227,673 + -0.3
4,227,673 + +2.0
4,227,673 + +0.1
4,227,673 + -0.1
4,227,674 - -0.6
4,227,674 - +0.6
4,227,674 - +0.3
4,227,674 - -1.3
4,227,674 - +0.7
4,227,752 + +0.1
4,227,753 - +0.2
4,227,753 - -1.3
4,227,753 - -0.5
4,227,783 + -2.8
4,227,784 - -0.2
4,227,784 - +0.2
4,227,843 + RR42_RS19560 0.13 -2.0
4,227,843 + RR42_RS19560 0.13 -0.1
4,227,844 - RR42_RS19560 0.13 +0.1
4,227,855 + RR42_RS19560 0.15 -0.3
4,227,856 - RR42_RS19560 0.15 -1.4
4,227,895 - RR42_RS19560 0.21 +0.3
4,228,326 + -0.4
4,228,326 + -0.8
4,228,364 + -0.0
4,228,443 - -1.9
4,228,443 - -0.5
4,228,624 - RR42_RS19565 0.17 +1.0
4,228,624 - RR42_RS19565 0.17 +1.6
4,228,625 + RR42_RS19565 0.17 -0.3
4,228,625 + RR42_RS19565 0.17 -1.9
4,228,626 - RR42_RS19565 0.17 -1.2
4,228,626 - RR42_RS19565 0.17 +1.0
4,228,626 - RR42_RS19565 0.17 +0.5
4,228,626 - RR42_RS19565 0.17 -1.5

Or see this region's nucleotide sequence