Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19405 and RR42_RS19410 are separated by 402 nucleotides RR42_RS19410 and RR42_RS19415 are separated by 307 nucleotides
RR42_RS19405: RR42_RS19405 - hypothetical protein, at 4,191,801 to 4,192,196
_RS19405
RR42_RS19410: RR42_RS19410 - GntR family transcriptional regulator, at 4,192,599 to 4,193,315
_RS19410
RR42_RS19415: RR42_RS19415 - membrane protein, at 4,193,623 to 4,194,870
_RS19415
Position (kb)
4192
4193
4194 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4191.654 kb on + strand at 4191.655 kb on - strand at 4191.655 kb on - strand at 4191.655 kb on - strand at 4191.655 kb on - strand at 4191.658 kb on + strand at 4191.658 kb on + strand at 4191.659 kb on - strand at 4191.718 kb on + strand at 4191.718 kb on + strand at 4191.718 kb on + strand at 4191.719 kb on - strand at 4191.719 kb on - strand at 4191.719 kb on - strand at 4191.780 kb on + strand at 4191.780 kb on + strand at 4191.780 kb on + strand at 4191.780 kb on + strand at 4191.780 kb on + strand at 4191.780 kb on + strand at 4191.780 kb on + strand at 4191.781 kb on - strand at 4191.781 kb on - strand at 4191.781 kb on - strand at 4191.782 kb on + strand at 4191.782 kb on + strand at 4191.782 kb on + strand at 4191.782 kb on + strand at 4191.784 kb on + strand at 4191.784 kb on + strand at 4191.784 kb on + strand at 4191.784 kb on + strand at 4191.784 kb on + strand at 4191.785 kb on - strand at 4191.785 kb on - strand at 4191.785 kb on - strand at 4191.785 kb on - strand at 4191.785 kb on - strand at 4191.868 kb on + strand, within RR42_RS19405 at 4191.869 kb on - strand, within RR42_RS19405 at 4191.918 kb on + strand, within RR42_RS19405 at 4191.921 kb on + strand, within RR42_RS19405 at 4191.921 kb on + strand, within RR42_RS19405 at 4191.921 kb on + strand, within RR42_RS19405 at 4191.921 kb on + strand, within RR42_RS19405 at 4191.921 kb on + strand, within RR42_RS19405 at 4191.922 kb on - strand, within RR42_RS19405 at 4191.922 kb on - strand, within RR42_RS19405 at 4191.922 kb on - strand, within RR42_RS19405 at 4191.922 kb on - strand, within RR42_RS19405 at 4191.982 kb on + strand, within RR42_RS19405 at 4191.982 kb on + strand, within RR42_RS19405 at 4191.982 kb on + strand, within RR42_RS19405 at 4191.982 kb on + strand, within RR42_RS19405 at 4191.982 kb on + strand, within RR42_RS19405 at 4191.982 kb on + strand, within RR42_RS19405 at 4191.983 kb on - strand, within RR42_RS19405 at 4191.983 kb on - strand, within RR42_RS19405 at 4192.075 kb on + strand, within RR42_RS19405 at 4192.075 kb on + strand, within RR42_RS19405 at 4192.076 kb on - strand, within RR42_RS19405 at 4192.076 kb on - strand, within RR42_RS19405 at 4192.119 kb on + strand, within RR42_RS19405 at 4192.152 kb on - strand, within RR42_RS19405 at 4192.153 kb on + strand, within RR42_RS19405 at 4192.153 kb on + strand, within RR42_RS19405 at 4192.153 kb on + strand, within RR42_RS19405 at 4192.154 kb on - strand, within RR42_RS19405 at 4192.154 kb on - strand, within RR42_RS19405 at 4192.154 kb on - strand, within RR42_RS19405 at 4192.190 kb on - strand at 4192.194 kb on + strand at 4192.194 kb on + strand at 4192.194 kb on + strand at 4192.195 kb on - strand at 4192.315 kb on + strand at 4192.315 kb on + strand at 4192.315 kb on + strand at 4192.315 kb on + strand at 4192.316 kb on - strand at 4192.387 kb on + strand at 4192.387 kb on + strand at 4192.387 kb on + strand at 4192.388 kb on - strand at 4192.590 kb on + strand at 4192.593 kb on + strand at 4192.652 kb on + strand at 4192.654 kb on + strand at 4192.654 kb on + strand at 4192.654 kb on + strand at 4192.655 kb on - strand at 4192.799 kb on + strand, within RR42_RS19410 at 4192.799 kb on + strand, within RR42_RS19410 at 4192.799 kb on + strand, within RR42_RS19410 at 4192.800 kb on - strand, within RR42_RS19410 at 4192.809 kb on - strand, within RR42_RS19410 at 4192.824 kb on - strand, within RR42_RS19410 at 4192.835 kb on + strand, within RR42_RS19410 at 4192.836 kb on - strand, within RR42_RS19410 at 4193.148 kb on + strand, within RR42_RS19410 at 4193.148 kb on + strand, within RR42_RS19410 at 4193.149 kb on - strand, within RR42_RS19410 at 4193.149 kb on - strand, within RR42_RS19410 at 4193.182 kb on + strand, within RR42_RS19410 at 4193.213 kb on + strand, within RR42_RS19410 at 4193.214 kb on - strand, within RR42_RS19410 at 4193.315 kb on + strand at 4193.315 kb on + strand at 4193.315 kb on + strand at 4193.315 kb on + strand at 4193.315 kb on + strand at 4193.316 kb on - strand at 4193.316 kb on - strand at 4193.316 kb on - strand at 4193.316 kb on - strand at 4193.316 kb on - strand at 4193.462 kb on + strand at 4193.462 kb on + strand at 4193.462 kb on + strand at 4193.462 kb on + strand at 4193.463 kb on - strand at 4193.463 kb on - strand at 4193.463 kb on - strand at 4193.484 kb on + strand at 4193.485 kb on - strand at 4193.485 kb on - strand at 4193.485 kb on - strand at 4193.581 kb on + strand at 4193.581 kb on + strand at 4193.581 kb on + strand at 4193.581 kb on + strand at 4193.590 kb on + strand at 4193.590 kb on + strand at 4193.631 kb on + strand at 4193.792 kb on + strand, within RR42_RS19415 at 4193.792 kb on + strand, within RR42_RS19415 at 4193.792 kb on + strand, within RR42_RS19415 at 4193.793 kb on - strand, within RR42_RS19415 at 4193.793 kb on - strand, within RR42_RS19415 at 4193.793 kb on - strand, within RR42_RS19415 at 4193.930 kb on + strand, within RR42_RS19415 at 4193.930 kb on + strand, within RR42_RS19415 at 4193.931 kb on - strand, within RR42_RS19415 at 4193.940 kb on + strand, within RR42_RS19415 at 4193.940 kb on + strand, within RR42_RS19415 at 4193.940 kb on + strand, within RR42_RS19415 at 4193.941 kb on - strand, within RR42_RS19415 at 4193.941 kb on - strand, within RR42_RS19415 at 4193.941 kb on - strand, within RR42_RS19415 at 4194.154 kb on - strand, within RR42_RS19415 at 4194.154 kb on - strand, within RR42_RS19415 at 4194.165 kb on + strand, within RR42_RS19415 at 4194.165 kb on + strand, within RR42_RS19415 at 4194.166 kb on - strand, within RR42_RS19415 at 4194.166 kb on - strand, within RR42_RS19415
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,191,654 + +1.0 4,191,655 - -0.2 4,191,655 - +1.3 4,191,655 - -0.5 4,191,655 - -0.5 4,191,658 + -0.9 4,191,658 + +0.9 4,191,659 - +0.3 4,191,718 + -0.0 4,191,718 + -1.6 4,191,718 + -0.0 4,191,719 - -0.3 4,191,719 - -0.9 4,191,719 - +0.6 4,191,780 + -0.3 4,191,780 + +2.6 4,191,780 + +1.1 4,191,780 + +0.4 4,191,780 + -1.1 4,191,780 + +0.0 4,191,780 + +0.8 4,191,781 - -0.4 4,191,781 - +0.4 4,191,781 - -0.4 4,191,782 + -0.8 4,191,782 + +0.5 4,191,782 + -1.2 4,191,782 + +0.6 4,191,784 + -0.9 4,191,784 + +1.6 4,191,784 + -0.1 4,191,784 + -0.9 4,191,784 + +1.1 4,191,785 - +1.0 4,191,785 - -0.5 4,191,785 - -1.7 4,191,785 - +0.0 4,191,785 - -1.3 4,191,868 + RR42_RS19405 0.17 -1.0 4,191,869 - RR42_RS19405 0.17 -0.7 4,191,918 + RR42_RS19405 0.30 -0.0 4,191,921 + RR42_RS19405 0.30 +1.6 4,191,921 + RR42_RS19405 0.30 -1.2 4,191,921 + RR42_RS19405 0.30 +0.6 4,191,921 + RR42_RS19405 0.30 -0.7 4,191,921 + RR42_RS19405 0.30 +0.3 4,191,922 - RR42_RS19405 0.31 +1.2 4,191,922 - RR42_RS19405 0.31 +2.3 4,191,922 - RR42_RS19405 0.31 +0.3 4,191,922 - RR42_RS19405 0.31 +1.1 4,191,982 + RR42_RS19405 0.46 -0.2 4,191,982 + RR42_RS19405 0.46 -1.2 4,191,982 + RR42_RS19405 0.46 -0.3 4,191,982 + RR42_RS19405 0.46 -0.3 4,191,982 + RR42_RS19405 0.46 -1.4 4,191,982 + RR42_RS19405 0.46 -0.2 4,191,983 - RR42_RS19405 0.46 -2.3 4,191,983 - RR42_RS19405 0.46 -0.1 4,192,075 + RR42_RS19405 0.69 -0.8 4,192,075 + RR42_RS19405 0.69 -0.1 4,192,076 - RR42_RS19405 0.69 -0.2 4,192,076 - RR42_RS19405 0.69 +0.3 4,192,119 + RR42_RS19405 0.80 -1.2 4,192,152 - RR42_RS19405 0.89 -1.0 4,192,153 + RR42_RS19405 0.89 -0.2 4,192,153 + RR42_RS19405 0.89 +0.1 4,192,153 + RR42_RS19405 0.89 -0.2 4,192,154 - RR42_RS19405 0.89 -2.1 4,192,154 - RR42_RS19405 0.89 +1.8 4,192,154 - RR42_RS19405 0.89 +1.0 4,192,190 - -0.3 4,192,194 + -0.9 4,192,194 + +0.3 4,192,194 + +0.0 4,192,195 - -0.0 4,192,315 + -1.0 4,192,315 + -0.4 4,192,315 + -0.3 4,192,315 + +0.8 4,192,316 - -0.6 4,192,387 + -0.1 4,192,387 + -0.0 4,192,387 + -0.0 4,192,388 - +0.0 4,192,590 + +0.3 4,192,593 + -0.2 4,192,652 + -0.1 4,192,654 + +1.3 4,192,654 + +1.1 4,192,654 + +0.4 4,192,655 - -0.2 4,192,799 + RR42_RS19410 0.28 -3.5 4,192,799 + RR42_RS19410 0.28 -2.1 4,192,799 + RR42_RS19410 0.28 -0.7 4,192,800 - RR42_RS19410 0.28 -1.3 4,192,809 - RR42_RS19410 0.29 -1.0 4,192,824 - RR42_RS19410 0.31 -1.3 4,192,835 + RR42_RS19410 0.33 -0.2 4,192,836 - RR42_RS19410 0.33 -0.4 4,193,148 + RR42_RS19410 0.77 -0.1 4,193,148 + RR42_RS19410 0.77 -0.4 4,193,149 - RR42_RS19410 0.77 +0.4 4,193,149 - RR42_RS19410 0.77 -2.3 4,193,182 + RR42_RS19410 0.81 -0.0 4,193,213 + RR42_RS19410 0.86 -0.9 4,193,214 - RR42_RS19410 0.86 +0.6 4,193,315 + +1.0 4,193,315 + -2.7 4,193,315 + +0.3 4,193,315 + -2.3 4,193,315 + +1.2 4,193,316 - +0.2 4,193,316 - -0.9 4,193,316 - -2.8 4,193,316 - -1.1 4,193,316 - -0.1 4,193,462 + -0.1 4,193,462 + -0.8 4,193,462 + -0.5 4,193,462 + +0.7 4,193,463 - -2.0 4,193,463 - +0.2 4,193,463 - +0.3 4,193,484 + -1.9 4,193,485 - +0.7 4,193,485 - +2.1 4,193,485 - +0.3 4,193,581 + -2.7 4,193,581 + -0.9 4,193,581 + -0.6 4,193,581 + +1.0 4,193,590 + +0.2 4,193,590 + +0.4 4,193,631 + -1.2 4,193,792 + RR42_RS19415 0.14 -0.1 4,193,792 + RR42_RS19415 0.14 -0.7 4,193,792 + RR42_RS19415 0.14 -0.7 4,193,793 - RR42_RS19415 0.14 -1.4 4,193,793 - RR42_RS19415 0.14 +0.8 4,193,793 - RR42_RS19415 0.14 +0.1 4,193,930 + RR42_RS19415 0.25 +0.0 4,193,930 + RR42_RS19415 0.25 +0.5 4,193,931 - RR42_RS19415 0.25 -0.5 4,193,940 + RR42_RS19415 0.25 +0.0 4,193,940 + RR42_RS19415 0.25 -1.4 4,193,940 + RR42_RS19415 0.25 -1.4 4,193,941 - RR42_RS19415 0.25 +0.3 4,193,941 - RR42_RS19415 0.25 +0.8 4,193,941 - RR42_RS19415 0.25 -0.5 4,194,154 - RR42_RS19415 0.43 -0.0 4,194,154 - RR42_RS19415 0.43 +0.1 4,194,165 + RR42_RS19415 0.43 -0.6 4,194,165 + RR42_RS19415 0.43 -1.7 4,194,166 - RR42_RS19415 0.44 -1.2 4,194,166 - RR42_RS19415 0.44 +0.3
Or see this region's nucleotide sequence