Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19410

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19405 and RR42_RS19410 are separated by 402 nucleotidesRR42_RS19410 and RR42_RS19415 are separated by 307 nucleotides RR42_RS19405: RR42_RS19405 - hypothetical protein, at 4,191,801 to 4,192,196 _RS19405 RR42_RS19410: RR42_RS19410 - GntR family transcriptional regulator, at 4,192,599 to 4,193,315 _RS19410 RR42_RS19415: RR42_RS19415 - membrane protein, at 4,193,623 to 4,194,870 _RS19415 Position (kb) 4192 4193 4194Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4191.654 kb on + strandat 4191.655 kb on - strandat 4191.655 kb on - strandat 4191.655 kb on - strandat 4191.655 kb on - strandat 4191.658 kb on + strandat 4191.658 kb on + strandat 4191.659 kb on - strandat 4191.718 kb on + strandat 4191.718 kb on + strandat 4191.718 kb on + strandat 4191.719 kb on - strandat 4191.719 kb on - strandat 4191.719 kb on - strandat 4191.780 kb on + strandat 4191.780 kb on + strandat 4191.780 kb on + strandat 4191.780 kb on + strandat 4191.780 kb on + strandat 4191.780 kb on + strandat 4191.780 kb on + strandat 4191.781 kb on - strandat 4191.781 kb on - strandat 4191.781 kb on - strandat 4191.782 kb on + strandat 4191.782 kb on + strandat 4191.782 kb on + strandat 4191.782 kb on + strandat 4191.784 kb on + strandat 4191.784 kb on + strandat 4191.784 kb on + strandat 4191.784 kb on + strandat 4191.784 kb on + strandat 4191.785 kb on - strandat 4191.785 kb on - strandat 4191.785 kb on - strandat 4191.785 kb on - strandat 4191.785 kb on - strandat 4191.868 kb on + strand, within RR42_RS19405at 4191.869 kb on - strand, within RR42_RS19405at 4191.918 kb on + strand, within RR42_RS19405at 4191.921 kb on + strand, within RR42_RS19405at 4191.921 kb on + strand, within RR42_RS19405at 4191.921 kb on + strand, within RR42_RS19405at 4191.921 kb on + strand, within RR42_RS19405at 4191.921 kb on + strand, within RR42_RS19405at 4191.922 kb on - strand, within RR42_RS19405at 4191.922 kb on - strand, within RR42_RS19405at 4191.922 kb on - strand, within RR42_RS19405at 4191.922 kb on - strand, within RR42_RS19405at 4191.982 kb on + strand, within RR42_RS19405at 4191.982 kb on + strand, within RR42_RS19405at 4191.982 kb on + strand, within RR42_RS19405at 4191.982 kb on + strand, within RR42_RS19405at 4191.982 kb on + strand, within RR42_RS19405at 4191.982 kb on + strand, within RR42_RS19405at 4191.983 kb on - strand, within RR42_RS19405at 4191.983 kb on - strand, within RR42_RS19405at 4192.075 kb on + strand, within RR42_RS19405at 4192.075 kb on + strand, within RR42_RS19405at 4192.076 kb on - strand, within RR42_RS19405at 4192.076 kb on - strand, within RR42_RS19405at 4192.119 kb on + strand, within RR42_RS19405at 4192.152 kb on - strand, within RR42_RS19405at 4192.153 kb on + strand, within RR42_RS19405at 4192.153 kb on + strand, within RR42_RS19405at 4192.153 kb on + strand, within RR42_RS19405at 4192.154 kb on - strand, within RR42_RS19405at 4192.154 kb on - strand, within RR42_RS19405at 4192.154 kb on - strand, within RR42_RS19405at 4192.190 kb on - strandat 4192.194 kb on + strandat 4192.194 kb on + strandat 4192.194 kb on + strandat 4192.195 kb on - strandat 4192.315 kb on + strandat 4192.315 kb on + strandat 4192.315 kb on + strandat 4192.315 kb on + strandat 4192.316 kb on - strandat 4192.387 kb on + strandat 4192.387 kb on + strandat 4192.387 kb on + strandat 4192.388 kb on - strandat 4192.590 kb on + strandat 4192.593 kb on + strandat 4192.652 kb on + strandat 4192.654 kb on + strandat 4192.654 kb on + strandat 4192.654 kb on + strandat 4192.655 kb on - strandat 4192.799 kb on + strand, within RR42_RS19410at 4192.799 kb on + strand, within RR42_RS19410at 4192.799 kb on + strand, within RR42_RS19410at 4192.800 kb on - strand, within RR42_RS19410at 4192.809 kb on - strand, within RR42_RS19410at 4192.824 kb on - strand, within RR42_RS19410at 4192.835 kb on + strand, within RR42_RS19410at 4192.836 kb on - strand, within RR42_RS19410at 4193.148 kb on + strand, within RR42_RS19410at 4193.148 kb on + strand, within RR42_RS19410at 4193.149 kb on - strand, within RR42_RS19410at 4193.149 kb on - strand, within RR42_RS19410at 4193.182 kb on + strand, within RR42_RS19410at 4193.213 kb on + strand, within RR42_RS19410at 4193.214 kb on - strand, within RR42_RS19410at 4193.315 kb on + strandat 4193.315 kb on + strandat 4193.315 kb on + strandat 4193.315 kb on + strandat 4193.315 kb on + strandat 4193.316 kb on - strandat 4193.316 kb on - strandat 4193.316 kb on - strandat 4193.316 kb on - strandat 4193.316 kb on - strandat 4193.462 kb on + strandat 4193.462 kb on + strandat 4193.462 kb on + strandat 4193.462 kb on + strandat 4193.463 kb on - strandat 4193.463 kb on - strandat 4193.463 kb on - strandat 4193.484 kb on + strandat 4193.485 kb on - strandat 4193.485 kb on - strandat 4193.485 kb on - strandat 4193.581 kb on + strandat 4193.581 kb on + strandat 4193.581 kb on + strandat 4193.581 kb on + strandat 4193.590 kb on + strandat 4193.590 kb on + strandat 4193.631 kb on + strandat 4193.792 kb on + strand, within RR42_RS19415at 4193.792 kb on + strand, within RR42_RS19415at 4193.792 kb on + strand, within RR42_RS19415at 4193.793 kb on - strand, within RR42_RS19415at 4193.793 kb on - strand, within RR42_RS19415at 4193.793 kb on - strand, within RR42_RS19415at 4193.930 kb on + strand, within RR42_RS19415at 4193.930 kb on + strand, within RR42_RS19415at 4193.931 kb on - strand, within RR42_RS19415at 4193.940 kb on + strand, within RR42_RS19415at 4193.940 kb on + strand, within RR42_RS19415at 4193.940 kb on + strand, within RR42_RS19415at 4193.941 kb on - strand, within RR42_RS19415at 4193.941 kb on - strand, within RR42_RS19415at 4193.941 kb on - strand, within RR42_RS19415at 4194.154 kb on - strand, within RR42_RS19415at 4194.154 kb on - strand, within RR42_RS19415at 4194.165 kb on + strand, within RR42_RS19415at 4194.165 kb on + strand, within RR42_RS19415at 4194.166 kb on - strand, within RR42_RS19415at 4194.166 kb on - strand, within RR42_RS19415

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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4,191,654 + +1.0
4,191,655 - -0.2
4,191,655 - +1.3
4,191,655 - -0.5
4,191,655 - -0.5
4,191,658 + -0.9
4,191,658 + +0.9
4,191,659 - +0.3
4,191,718 + -0.0
4,191,718 + -1.6
4,191,718 + -0.0
4,191,719 - -0.3
4,191,719 - -0.9
4,191,719 - +0.6
4,191,780 + -0.3
4,191,780 + +2.6
4,191,780 + +1.1
4,191,780 + +0.4
4,191,780 + -1.1
4,191,780 + +0.0
4,191,780 + +0.8
4,191,781 - -0.4
4,191,781 - +0.4
4,191,781 - -0.4
4,191,782 + -0.8
4,191,782 + +0.5
4,191,782 + -1.2
4,191,782 + +0.6
4,191,784 + -0.9
4,191,784 + +1.6
4,191,784 + -0.1
4,191,784 + -0.9
4,191,784 + +1.1
4,191,785 - +1.0
4,191,785 - -0.5
4,191,785 - -1.7
4,191,785 - +0.0
4,191,785 - -1.3
4,191,868 + RR42_RS19405 0.17 -1.0
4,191,869 - RR42_RS19405 0.17 -0.7
4,191,918 + RR42_RS19405 0.30 -0.0
4,191,921 + RR42_RS19405 0.30 +1.6
4,191,921 + RR42_RS19405 0.30 -1.2
4,191,921 + RR42_RS19405 0.30 +0.6
4,191,921 + RR42_RS19405 0.30 -0.7
4,191,921 + RR42_RS19405 0.30 +0.3
4,191,922 - RR42_RS19405 0.31 +1.2
4,191,922 - RR42_RS19405 0.31 +2.3
4,191,922 - RR42_RS19405 0.31 +0.3
4,191,922 - RR42_RS19405 0.31 +1.1
4,191,982 + RR42_RS19405 0.46 -0.2
4,191,982 + RR42_RS19405 0.46 -1.2
4,191,982 + RR42_RS19405 0.46 -0.3
4,191,982 + RR42_RS19405 0.46 -0.3
4,191,982 + RR42_RS19405 0.46 -1.4
4,191,982 + RR42_RS19405 0.46 -0.2
4,191,983 - RR42_RS19405 0.46 -2.3
4,191,983 - RR42_RS19405 0.46 -0.1
4,192,075 + RR42_RS19405 0.69 -0.8
4,192,075 + RR42_RS19405 0.69 -0.1
4,192,076 - RR42_RS19405 0.69 -0.2
4,192,076 - RR42_RS19405 0.69 +0.3
4,192,119 + RR42_RS19405 0.80 -1.2
4,192,152 - RR42_RS19405 0.89 -1.0
4,192,153 + RR42_RS19405 0.89 -0.2
4,192,153 + RR42_RS19405 0.89 +0.1
4,192,153 + RR42_RS19405 0.89 -0.2
4,192,154 - RR42_RS19405 0.89 -2.1
4,192,154 - RR42_RS19405 0.89 +1.8
4,192,154 - RR42_RS19405 0.89 +1.0
4,192,190 - -0.3
4,192,194 + -0.9
4,192,194 + +0.3
4,192,194 + +0.0
4,192,195 - -0.0
4,192,315 + -1.0
4,192,315 + -0.4
4,192,315 + -0.3
4,192,315 + +0.8
4,192,316 - -0.6
4,192,387 + -0.1
4,192,387 + -0.0
4,192,387 + -0.0
4,192,388 - +0.0
4,192,590 + +0.3
4,192,593 + -0.2
4,192,652 + -0.1
4,192,654 + +1.3
4,192,654 + +1.1
4,192,654 + +0.4
4,192,655 - -0.2
4,192,799 + RR42_RS19410 0.28 -3.5
4,192,799 + RR42_RS19410 0.28 -2.1
4,192,799 + RR42_RS19410 0.28 -0.7
4,192,800 - RR42_RS19410 0.28 -1.3
4,192,809 - RR42_RS19410 0.29 -1.0
4,192,824 - RR42_RS19410 0.31 -1.3
4,192,835 + RR42_RS19410 0.33 -0.2
4,192,836 - RR42_RS19410 0.33 -0.4
4,193,148 + RR42_RS19410 0.77 -0.1
4,193,148 + RR42_RS19410 0.77 -0.4
4,193,149 - RR42_RS19410 0.77 +0.4
4,193,149 - RR42_RS19410 0.77 -2.3
4,193,182 + RR42_RS19410 0.81 -0.0
4,193,213 + RR42_RS19410 0.86 -0.9
4,193,214 - RR42_RS19410 0.86 +0.6
4,193,315 + +1.0
4,193,315 + -2.7
4,193,315 + +0.3
4,193,315 + -2.3
4,193,315 + +1.2
4,193,316 - +0.2
4,193,316 - -0.9
4,193,316 - -2.8
4,193,316 - -1.1
4,193,316 - -0.1
4,193,462 + -0.1
4,193,462 + -0.8
4,193,462 + -0.5
4,193,462 + +0.7
4,193,463 - -2.0
4,193,463 - +0.2
4,193,463 - +0.3
4,193,484 + -1.9
4,193,485 - +0.7
4,193,485 - +2.1
4,193,485 - +0.3
4,193,581 + -2.7
4,193,581 + -0.9
4,193,581 + -0.6
4,193,581 + +1.0
4,193,590 + +0.2
4,193,590 + +0.4
4,193,631 + -1.2
4,193,792 + RR42_RS19415 0.14 -0.1
4,193,792 + RR42_RS19415 0.14 -0.7
4,193,792 + RR42_RS19415 0.14 -0.7
4,193,793 - RR42_RS19415 0.14 -1.4
4,193,793 - RR42_RS19415 0.14 +0.8
4,193,793 - RR42_RS19415 0.14 +0.1
4,193,930 + RR42_RS19415 0.25 +0.0
4,193,930 + RR42_RS19415 0.25 +0.5
4,193,931 - RR42_RS19415 0.25 -0.5
4,193,940 + RR42_RS19415 0.25 +0.0
4,193,940 + RR42_RS19415 0.25 -1.4
4,193,940 + RR42_RS19415 0.25 -1.4
4,193,941 - RR42_RS19415 0.25 +0.3
4,193,941 - RR42_RS19415 0.25 +0.8
4,193,941 - RR42_RS19415 0.25 -0.5
4,194,154 - RR42_RS19415 0.43 -0.0
4,194,154 - RR42_RS19415 0.43 +0.1
4,194,165 + RR42_RS19415 0.43 -0.6
4,194,165 + RR42_RS19415 0.43 -1.7
4,194,166 - RR42_RS19415 0.44 -1.2
4,194,166 - RR42_RS19415 0.44 +0.3

Or see this region's nucleotide sequence