Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19010

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19005 and RR42_RS19010 overlap by 14 nucleotidesRR42_RS19010 and RR42_RS19015 are separated by 246 nucleotides RR42_RS19005: RR42_RS19005 - 3-dehydroquinate synthase, at 4,116,964 to 4,118,070 _RS19005 RR42_RS19010: RR42_RS19010 - shikimate kinase, at 4,118,057 to 4,118,671 _RS19010 RR42_RS19015: RR42_RS19015 - secretin, at 4,118,918 to 4,121,092 _RS19015 Position (kb) 4118 4119Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4117.341 kb on + strand, within RR42_RS19005at 4117.341 kb on + strand, within RR42_RS19005at 4117.342 kb on - strand, within RR42_RS19005at 4117.718 kb on + strand, within RR42_RS19005at 4117.718 kb on + strand, within RR42_RS19005at 4117.718 kb on + strand, within RR42_RS19005at 4117.719 kb on - strand, within RR42_RS19005at 4117.926 kb on - strand, within RR42_RS19005at 4118.033 kb on + strandat 4118.179 kb on + strand, within RR42_RS19010at 4118.179 kb on + strand, within RR42_RS19010at 4118.179 kb on + strand, within RR42_RS19010at 4118.179 kb on + strand, within RR42_RS19010at 4118.179 kb on + strand, within RR42_RS19010at 4118.180 kb on - strand, within RR42_RS19010at 4118.182 kb on + strand, within RR42_RS19010at 4118.182 kb on + strand, within RR42_RS19010at 4118.183 kb on - strand, within RR42_RS19010at 4118.183 kb on - strand, within RR42_RS19010at 4118.183 kb on - strand, within RR42_RS19010at 4118.262 kb on + strand, within RR42_RS19010at 4118.262 kb on + strand, within RR42_RS19010at 4118.262 kb on + strand, within RR42_RS19010at 4118.263 kb on - strand, within RR42_RS19010at 4118.263 kb on - strand, within RR42_RS19010at 4118.365 kb on - strand, within RR42_RS19010at 4118.531 kb on - strand, within RR42_RS19010at 4118.580 kb on + strand, within RR42_RS19010at 4118.736 kb on + strandat 4118.736 kb on + strandat 4118.736 kb on + strandat 4118.736 kb on + strandat 4118.736 kb on + strandat 4118.736 kb on + strandat 4118.736 kb on + strandat 4118.736 kb on + strandat 4118.736 kb on + strandat 4118.737 kb on - strandat 4118.737 kb on - strandat 4118.737 kb on - strandat 4118.737 kb on - strandat 4118.737 kb on - strandat 4118.737 kb on - strandat 4118.737 kb on - strandat 4118.737 kb on - strandat 4118.737 kb on - strandat 4118.737 kb on - strandat 4118.857 kb on + strandat 4118.857 kb on + strandat 4118.894 kb on + strandat 4118.895 kb on - strandat 4118.895 kb on - strandat 4118.895 kb on - strandat 4118.895 kb on - strandat 4118.920 kb on - strandat 4119.076 kb on + strandat 4119.078 kb on + strandat 4119.078 kb on + strandat 4119.078 kb on + strandat 4119.078 kb on + strandat 4119.078 kb on + strandat 4119.078 kb on + strandat 4119.078 kb on + strandat 4119.079 kb on - strandat 4119.079 kb on - strandat 4119.079 kb on - strandat 4119.079 kb on - strandat 4119.079 kb on - strandat 4119.079 kb on - strandat 4119.079 kb on - strandat 4119.306 kb on + strand, within RR42_RS19015at 4119.307 kb on - strand, within RR42_RS19015at 4119.343 kb on + strand, within RR42_RS19015at 4119.343 kb on + strand, within RR42_RS19015at 4119.343 kb on + strand, within RR42_RS19015at 4119.343 kb on + strand, within RR42_RS19015at 4119.344 kb on - strand, within RR42_RS19015at 4119.344 kb on - strand, within RR42_RS19015at 4119.564 kb on + strand, within RR42_RS19015at 4119.564 kb on + strand, within RR42_RS19015at 4119.564 kb on + strand, within RR42_RS19015at 4119.564 kb on + strand, within RR42_RS19015at 4119.564 kb on + strand, within RR42_RS19015at 4119.564 kb on + strand, within RR42_RS19015at 4119.564 kb on + strand, within RR42_RS19015at 4119.565 kb on - strand, within RR42_RS19015at 4119.565 kb on - strand, within RR42_RS19015at 4119.565 kb on - strand, within RR42_RS19015at 4119.565 kb on - strand, within RR42_RS19015at 4119.565 kb on - strand, within RR42_RS19015at 4119.565 kb on - strand, within RR42_RS19015at 4119.637 kb on + strand, within RR42_RS19015

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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4,117,341 + RR42_RS19005 0.34 -3.2
4,117,341 + RR42_RS19005 0.34 -3.3
4,117,342 - RR42_RS19005 0.34 -3.4
4,117,718 + RR42_RS19005 0.68 -0.8
4,117,718 + RR42_RS19005 0.68 -0.8
4,117,718 + RR42_RS19005 0.68 -4.1
4,117,719 - RR42_RS19005 0.68 -2.0
4,117,926 - RR42_RS19005 0.87 -5.3
4,118,033 + +1.5
4,118,179 + RR42_RS19010 0.20 -3.7
4,118,179 + RR42_RS19010 0.20 -2.2
4,118,179 + RR42_RS19010 0.20 -3.2
4,118,179 + RR42_RS19010 0.20 -2.0
4,118,179 + RR42_RS19010 0.20 -2.4
4,118,180 - RR42_RS19010 0.20 -0.5
4,118,182 + RR42_RS19010 0.20 -0.7
4,118,182 + RR42_RS19010 0.20 -3.0
4,118,183 - RR42_RS19010 0.20 -2.6
4,118,183 - RR42_RS19010 0.20 -1.8
4,118,183 - RR42_RS19010 0.20 -1.3
4,118,262 + RR42_RS19010 0.33 -2.1
4,118,262 + RR42_RS19010 0.33 +0.3
4,118,262 + RR42_RS19010 0.33 -1.2
4,118,263 - RR42_RS19010 0.33 -1.5
4,118,263 - RR42_RS19010 0.33 -1.8
4,118,365 - RR42_RS19010 0.50 -2.6
4,118,531 - RR42_RS19010 0.77 +0.3
4,118,580 + RR42_RS19010 0.85 -3.7
4,118,736 + -2.4
4,118,736 + -1.6
4,118,736 + -0.9
4,118,736 + -2.6
4,118,736 + -0.1
4,118,736 + -1.6
4,118,736 + -3.1
4,118,736 + -1.5
4,118,736 + -1.6
4,118,737 - +0.7
4,118,737 - +0.3
4,118,737 - -0.1
4,118,737 - +0.3
4,118,737 - +1.8
4,118,737 - -0.0
4,118,737 - +0.2
4,118,737 - +0.1
4,118,737 - +0.2
4,118,737 - +0.6
4,118,857 + -1.3
4,118,857 + +0.8
4,118,894 + -1.9
4,118,895 - -0.5
4,118,895 - +0.2
4,118,895 - -0.9
4,118,895 - -1.5
4,118,920 - +0.2
4,119,076 + -2.6
4,119,078 + +0.6
4,119,078 + +0.5
4,119,078 + +0.5
4,119,078 + -0.4
4,119,078 + +0.5
4,119,078 + -1.5
4,119,078 + +0.1
4,119,079 - +0.4
4,119,079 - -0.5
4,119,079 - +0.4
4,119,079 - -1.0
4,119,079 - +0.1
4,119,079 - -0.6
4,119,079 - +0.1
4,119,306 + RR42_RS19015 0.18 +1.4
4,119,307 - RR42_RS19015 0.18 +1.4
4,119,343 + RR42_RS19015 0.20 -0.6
4,119,343 + RR42_RS19015 0.20 +0.4
4,119,343 + RR42_RS19015 0.20 +0.5
4,119,343 + RR42_RS19015 0.20 +1.5
4,119,344 - RR42_RS19015 0.20 +0.5
4,119,344 - RR42_RS19015 0.20 +0.7
4,119,564 + RR42_RS19015 0.30 +1.3
4,119,564 + RR42_RS19015 0.30 -0.3
4,119,564 + RR42_RS19015 0.30 +0.5
4,119,564 + RR42_RS19015 0.30 -1.0
4,119,564 + RR42_RS19015 0.30 -2.2
4,119,564 + RR42_RS19015 0.30 -0.4
4,119,564 + RR42_RS19015 0.30 +0.0
4,119,565 - RR42_RS19015 0.30 +0.3
4,119,565 - RR42_RS19015 0.30 -0.6
4,119,565 - RR42_RS19015 0.30 -1.2
4,119,565 - RR42_RS19015 0.30 +0.8
4,119,565 - RR42_RS19015 0.30 +0.4
4,119,565 - RR42_RS19015 0.30 -2.7
4,119,637 + RR42_RS19015 0.33 -1.9

Or see this region's nucleotide sequence