Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19005 and RR42_RS19010 overlap by 14 nucleotides RR42_RS19010 and RR42_RS19015 are separated by 246 nucleotides
RR42_RS19005: RR42_RS19005 - 3-dehydroquinate synthase, at 4,116,964 to 4,118,070
_RS19005
RR42_RS19010: RR42_RS19010 - shikimate kinase, at 4,118,057 to 4,118,671
_RS19010
RR42_RS19015: RR42_RS19015 - secretin, at 4,118,918 to 4,121,092
_RS19015
Position (kb)
4118
4119 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 4117.341 kb on + strand, within RR42_RS19005 at 4117.341 kb on + strand, within RR42_RS19005 at 4117.342 kb on - strand, within RR42_RS19005 at 4117.718 kb on + strand, within RR42_RS19005 at 4117.718 kb on + strand, within RR42_RS19005 at 4117.718 kb on + strand, within RR42_RS19005 at 4117.719 kb on - strand, within RR42_RS19005 at 4117.926 kb on - strand, within RR42_RS19005 at 4118.033 kb on + strand at 4118.179 kb on + strand, within RR42_RS19010 at 4118.179 kb on + strand, within RR42_RS19010 at 4118.179 kb on + strand, within RR42_RS19010 at 4118.179 kb on + strand, within RR42_RS19010 at 4118.179 kb on + strand, within RR42_RS19010 at 4118.180 kb on - strand, within RR42_RS19010 at 4118.182 kb on + strand, within RR42_RS19010 at 4118.182 kb on + strand, within RR42_RS19010 at 4118.183 kb on - strand, within RR42_RS19010 at 4118.183 kb on - strand, within RR42_RS19010 at 4118.183 kb on - strand, within RR42_RS19010 at 4118.262 kb on + strand, within RR42_RS19010 at 4118.262 kb on + strand, within RR42_RS19010 at 4118.262 kb on + strand, within RR42_RS19010 at 4118.263 kb on - strand, within RR42_RS19010 at 4118.263 kb on - strand, within RR42_RS19010 at 4118.365 kb on - strand, within RR42_RS19010 at 4118.531 kb on - strand, within RR42_RS19010 at 4118.580 kb on + strand, within RR42_RS19010 at 4118.736 kb on + strand at 4118.736 kb on + strand at 4118.736 kb on + strand at 4118.736 kb on + strand at 4118.736 kb on + strand at 4118.736 kb on + strand at 4118.736 kb on + strand at 4118.736 kb on + strand at 4118.736 kb on + strand at 4118.737 kb on - strand at 4118.737 kb on - strand at 4118.737 kb on - strand at 4118.737 kb on - strand at 4118.737 kb on - strand at 4118.737 kb on - strand at 4118.737 kb on - strand at 4118.737 kb on - strand at 4118.737 kb on - strand at 4118.737 kb on - strand at 4118.857 kb on + strand at 4118.857 kb on + strand at 4118.894 kb on + strand at 4118.895 kb on - strand at 4118.895 kb on - strand at 4118.895 kb on - strand at 4118.895 kb on - strand at 4118.920 kb on - strand at 4119.076 kb on + strand at 4119.078 kb on + strand at 4119.078 kb on + strand at 4119.078 kb on + strand at 4119.078 kb on + strand at 4119.078 kb on + strand at 4119.078 kb on + strand at 4119.078 kb on + strand at 4119.079 kb on - strand at 4119.079 kb on - strand at 4119.079 kb on - strand at 4119.079 kb on - strand at 4119.079 kb on - strand at 4119.079 kb on - strand at 4119.079 kb on - strand at 4119.306 kb on + strand, within RR42_RS19015 at 4119.307 kb on - strand, within RR42_RS19015 at 4119.343 kb on + strand, within RR42_RS19015 at 4119.343 kb on + strand, within RR42_RS19015 at 4119.343 kb on + strand, within RR42_RS19015 at 4119.343 kb on + strand, within RR42_RS19015 at 4119.344 kb on - strand, within RR42_RS19015 at 4119.344 kb on - strand, within RR42_RS19015 at 4119.564 kb on + strand, within RR42_RS19015 at 4119.564 kb on + strand, within RR42_RS19015 at 4119.564 kb on + strand, within RR42_RS19015 at 4119.564 kb on + strand, within RR42_RS19015 at 4119.564 kb on + strand, within RR42_RS19015 at 4119.564 kb on + strand, within RR42_RS19015 at 4119.564 kb on + strand, within RR42_RS19015 at 4119.565 kb on - strand, within RR42_RS19015 at 4119.565 kb on - strand, within RR42_RS19015 at 4119.565 kb on - strand, within RR42_RS19015 at 4119.565 kb on - strand, within RR42_RS19015 at 4119.565 kb on - strand, within RR42_RS19015 at 4119.565 kb on - strand, within RR42_RS19015 at 4119.637 kb on + strand, within RR42_RS19015
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,117,341 + RR42_RS19005 0.34 -3.2 4,117,341 + RR42_RS19005 0.34 -3.3 4,117,342 - RR42_RS19005 0.34 -3.4 4,117,718 + RR42_RS19005 0.68 -0.8 4,117,718 + RR42_RS19005 0.68 -0.8 4,117,718 + RR42_RS19005 0.68 -4.1 4,117,719 - RR42_RS19005 0.68 -2.0 4,117,926 - RR42_RS19005 0.87 -5.3 4,118,033 + +1.5 4,118,179 + RR42_RS19010 0.20 -3.7 4,118,179 + RR42_RS19010 0.20 -2.2 4,118,179 + RR42_RS19010 0.20 -3.2 4,118,179 + RR42_RS19010 0.20 -2.0 4,118,179 + RR42_RS19010 0.20 -2.4 4,118,180 - RR42_RS19010 0.20 -0.5 4,118,182 + RR42_RS19010 0.20 -0.7 4,118,182 + RR42_RS19010 0.20 -3.0 4,118,183 - RR42_RS19010 0.20 -2.6 4,118,183 - RR42_RS19010 0.20 -1.8 4,118,183 - RR42_RS19010 0.20 -1.3 4,118,262 + RR42_RS19010 0.33 -2.1 4,118,262 + RR42_RS19010 0.33 +0.3 4,118,262 + RR42_RS19010 0.33 -1.2 4,118,263 - RR42_RS19010 0.33 -1.5 4,118,263 - RR42_RS19010 0.33 -1.8 4,118,365 - RR42_RS19010 0.50 -2.6 4,118,531 - RR42_RS19010 0.77 +0.3 4,118,580 + RR42_RS19010 0.85 -3.7 4,118,736 + -2.4 4,118,736 + -1.6 4,118,736 + -0.9 4,118,736 + -2.6 4,118,736 + -0.1 4,118,736 + -1.6 4,118,736 + -3.1 4,118,736 + -1.5 4,118,736 + -1.6 4,118,737 - +0.7 4,118,737 - +0.3 4,118,737 - -0.1 4,118,737 - +0.3 4,118,737 - +1.8 4,118,737 - -0.0 4,118,737 - +0.2 4,118,737 - +0.1 4,118,737 - +0.2 4,118,737 - +0.6 4,118,857 + -1.3 4,118,857 + +0.8 4,118,894 + -1.9 4,118,895 - -0.5 4,118,895 - +0.2 4,118,895 - -0.9 4,118,895 - -1.5 4,118,920 - +0.2 4,119,076 + -2.6 4,119,078 + +0.6 4,119,078 + +0.5 4,119,078 + +0.5 4,119,078 + -0.4 4,119,078 + +0.5 4,119,078 + -1.5 4,119,078 + +0.1 4,119,079 - +0.4 4,119,079 - -0.5 4,119,079 - +0.4 4,119,079 - -1.0 4,119,079 - +0.1 4,119,079 - -0.6 4,119,079 - +0.1 4,119,306 + RR42_RS19015 0.18 +1.4 4,119,307 - RR42_RS19015 0.18 +1.4 4,119,343 + RR42_RS19015 0.20 -0.6 4,119,343 + RR42_RS19015 0.20 +0.4 4,119,343 + RR42_RS19015 0.20 +0.5 4,119,343 + RR42_RS19015 0.20 +1.5 4,119,344 - RR42_RS19015 0.20 +0.5 4,119,344 - RR42_RS19015 0.20 +0.7 4,119,564 + RR42_RS19015 0.30 +1.3 4,119,564 + RR42_RS19015 0.30 -0.3 4,119,564 + RR42_RS19015 0.30 +0.5 4,119,564 + RR42_RS19015 0.30 -1.0 4,119,564 + RR42_RS19015 0.30 -2.2 4,119,564 + RR42_RS19015 0.30 -0.4 4,119,564 + RR42_RS19015 0.30 +0.0 4,119,565 - RR42_RS19015 0.30 +0.3 4,119,565 - RR42_RS19015 0.30 -0.6 4,119,565 - RR42_RS19015 0.30 -1.2 4,119,565 - RR42_RS19015 0.30 +0.8 4,119,565 - RR42_RS19015 0.30 +0.4 4,119,565 - RR42_RS19015 0.30 -2.7 4,119,637 + RR42_RS19015 0.33 -1.9
Or see this region's nucleotide sequence