Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18945

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS18940 and RR42_RS18945 are separated by 247 nucleotidesRR42_RS18945 and RR42_RS18950 are separated by 124 nucleotidesRR42_RS18950 and RR42_RS18955 are separated by 203 nucleotides RR42_RS18940: RR42_RS18940 - ABC transporter ATP-binding protein, at 4,100,577 to 4,101,530 _RS18940 RR42_RS18945: RR42_RS18945 - toluene tolerance protein, at 4,101,778 to 4,102,086 _RS18945 RR42_RS18950: RR42_RS18950 - hypothetical protein, at 4,102,211 to 4,102,834 _RS18950 RR42_RS18955: RR42_RS18955 - ABC transporter, at 4,103,038 to 4,103,868 _RS18955 Position (kb) 4101 4102 4103Strain fitness (log2 ratio) -2 -1 0 1at 4100.960 kb on - strand, within RR42_RS18940at 4100.960 kb on - strand, within RR42_RS18940at 4101.224 kb on - strand, within RR42_RS18940at 4101.224 kb on - strand, within RR42_RS18940at 4101.303 kb on - strand, within RR42_RS18940at 4101.303 kb on - strand, within RR42_RS18940at 4101.303 kb on - strand, within RR42_RS18940at 4101.640 kb on - strandat 4101.640 kb on - strandat 4101.640 kb on - strandat 4101.640 kb on - strandat 4101.640 kb on - strandat 4101.640 kb on - strandat 4101.640 kb on - strandat 4101.640 kb on - strandat 4101.642 kb on - strandat 4101.671 kb on - strandat 4101.671 kb on - strandat 4101.671 kb on - strandat 4101.671 kb on - strandat 4101.857 kb on + strand, within RR42_RS18945at 4101.857 kb on + strand, within RR42_RS18945at 4101.857 kb on + strand, within RR42_RS18945at 4101.857 kb on + strand, within RR42_RS18945at 4101.857 kb on + strand, within RR42_RS18945at 4101.858 kb on - strand, within RR42_RS18945at 4102.152 kb on + strandat 4102.152 kb on + strandat 4102.152 kb on + strandat 4102.153 kb on - strandat 4102.153 kb on - strandat 4102.311 kb on + strand, within RR42_RS18950at 4102.311 kb on + strand, within RR42_RS18950at 4102.311 kb on + strand, within RR42_RS18950at 4102.312 kb on - strand, within RR42_RS18950at 4102.312 kb on - strand, within RR42_RS18950at 4102.312 kb on - strand, within RR42_RS18950at 4102.312 kb on - strand, within RR42_RS18950at 4102.350 kb on + strand, within RR42_RS18950at 4102.351 kb on - strand, within RR42_RS18950at 4102.351 kb on - strand, within RR42_RS18950at 4102.351 kb on - strand, within RR42_RS18950at 4102.351 kb on - strand, within RR42_RS18950at 4102.464 kb on + strand, within RR42_RS18950at 4102.515 kb on + strand, within RR42_RS18950at 4102.515 kb on + strand, within RR42_RS18950at 4102.515 kb on + strand, within RR42_RS18950at 4102.515 kb on + strand, within RR42_RS18950at 4102.515 kb on + strand, within RR42_RS18950at 4102.515 kb on + strand, within RR42_RS18950at 4102.516 kb on - strand, within RR42_RS18950at 4102.516 kb on - strand, within RR42_RS18950at 4102.805 kb on - strandat 4102.834 kb on + strandat 4102.835 kb on - strandat 4102.835 kb on - strandat 4102.835 kb on - strandat 4102.835 kb on - strandat 4102.845 kb on + strandat 4102.846 kb on - strandat 4102.875 kb on + strandat 4102.876 kb on - strandat 4102.876 kb on - strandat 4102.876 kb on - strandat 4102.886 kb on + strandat 4102.886 kb on + strandat 4102.886 kb on + strandat 4102.886 kb on + strandat 4102.886 kb on + strandat 4102.886 kb on + strandat 4102.886 kb on + strandat 4102.886 kb on + strandat 4102.886 kb on + strandat 4102.886 kb on + strandat 4102.886 kb on + strandat 4102.886 kb on + strandat 4102.886 kb on + strandat 4102.887 kb on - strandat 4102.887 kb on - strandat 4102.887 kb on - strandat 4102.887 kb on - strandat 4102.887 kb on - strandat 4102.887 kb on - strandat 4103.061 kb on + strandat 4103.062 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
4,100,960 - RR42_RS18940 0.40 -0.2
4,100,960 - RR42_RS18940 0.40 -0.6
4,101,224 - RR42_RS18940 0.68 -1.1
4,101,224 - RR42_RS18940 0.68 +0.5
4,101,303 - RR42_RS18940 0.76 +0.7
4,101,303 - RR42_RS18940 0.76 -0.1
4,101,303 - RR42_RS18940 0.76 -1.8
4,101,640 - +0.3
4,101,640 - -1.0
4,101,640 - -0.4
4,101,640 - -0.1
4,101,640 - -0.3
4,101,640 - +0.5
4,101,640 - +0.8
4,101,640 - +0.8
4,101,642 - +1.5
4,101,671 - +0.9
4,101,671 - +0.5
4,101,671 - +1.0
4,101,671 - +0.3
4,101,857 + RR42_RS18945 0.26 +0.3
4,101,857 + RR42_RS18945 0.26 -1.0
4,101,857 + RR42_RS18945 0.26 -1.3
4,101,857 + RR42_RS18945 0.26 -1.5
4,101,857 + RR42_RS18945 0.26 -1.0
4,101,858 - RR42_RS18945 0.26 -1.5
4,102,152 + +0.3
4,102,152 + -0.1
4,102,152 + -0.0
4,102,153 - -1.2
4,102,153 - +0.6
4,102,311 + RR42_RS18950 0.16 -0.3
4,102,311 + RR42_RS18950 0.16 -0.1
4,102,311 + RR42_RS18950 0.16 -0.1
4,102,312 - RR42_RS18950 0.16 -0.9
4,102,312 - RR42_RS18950 0.16 -0.9
4,102,312 - RR42_RS18950 0.16 +0.1
4,102,312 - RR42_RS18950 0.16 -0.3
4,102,350 + RR42_RS18950 0.22 +0.7
4,102,351 - RR42_RS18950 0.22 -0.9
4,102,351 - RR42_RS18950 0.22 -0.1
4,102,351 - RR42_RS18950 0.22 -0.3
4,102,351 - RR42_RS18950 0.22 +0.6
4,102,464 + RR42_RS18950 0.41 +1.3
4,102,515 + RR42_RS18950 0.49 +0.3
4,102,515 + RR42_RS18950 0.49 -0.5
4,102,515 + RR42_RS18950 0.49 +0.0
4,102,515 + RR42_RS18950 0.49 +0.1
4,102,515 + RR42_RS18950 0.49 -0.3
4,102,515 + RR42_RS18950 0.49 +0.7
4,102,516 - RR42_RS18950 0.49 +1.1
4,102,516 - RR42_RS18950 0.49 +0.2
4,102,805 - +0.6
4,102,834 + -0.1
4,102,835 - +0.1
4,102,835 - +0.0
4,102,835 - +0.2
4,102,835 - +0.7
4,102,845 + -0.8
4,102,846 - +0.6
4,102,875 + -0.6
4,102,876 - +0.2
4,102,876 - +0.3
4,102,876 - -0.4
4,102,886 + +0.8
4,102,886 + +0.2
4,102,886 + -0.1
4,102,886 + +0.2
4,102,886 + -1.6
4,102,886 + -1.3
4,102,886 + +0.9
4,102,886 + +1.0
4,102,886 + +0.1
4,102,886 + +1.3
4,102,886 + -0.1
4,102,886 + -0.2
4,102,886 + -0.9
4,102,887 - +1.1
4,102,887 - -0.1
4,102,887 - +0.9
4,102,887 - -0.4
4,102,887 - +0.4
4,102,887 - +0.5
4,103,061 + -0.5
4,103,062 - +0.1

Or see this region's nucleotide sequence