Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17590

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17580 and RR42_RS17585 are separated by 72 nucleotidesRR42_RS17585 and RR42_RS17590 overlap by 1 nucleotidesRR42_RS17590 and RR42_RS17595 are separated by 54 nucleotidesRR42_RS17595 and RR42_RS17600 are separated by 83 nucleotides RR42_RS17580: RR42_RS17580 - spermidine synthase, at 3,805,505 to 3,806,341 _RS17580 RR42_RS17585: RR42_RS17585 - glyoxalase, at 3,806,414 to 3,806,854 _RS17585 RR42_RS17590: RR42_RS17590 - 16S rRNA methyltransferase, at 3,806,854 to 3,807,612 _RS17590 RR42_RS17595: RR42_RS17595 - hypothetical protein, at 3,807,667 to 3,808,257 _RS17595 RR42_RS17600: RR42_RS17600 - ribonuclease inhibitor, at 3,808,341 to 3,808,940 _RS17600 Position (kb) 3806 3807 3808Strain fitness (log2 ratio) -2 -1 0 1at 3805.926 kb on + strand, within RR42_RS17580at 3806.072 kb on - strand, within RR42_RS17580at 3806.258 kb on + strandat 3806.258 kb on + strandat 3806.339 kb on + strandat 3806.339 kb on + strandat 3806.340 kb on - strandat 3806.450 kb on + strandat 3806.489 kb on + strand, within RR42_RS17585at 3806.489 kb on + strand, within RR42_RS17585at 3806.490 kb on - strand, within RR42_RS17585at 3806.490 kb on - strand, within RR42_RS17585at 3806.490 kb on - strand, within RR42_RS17585at 3806.490 kb on - strand, within RR42_RS17585at 3806.564 kb on + strand, within RR42_RS17585at 3806.564 kb on + strand, within RR42_RS17585at 3806.565 kb on - strand, within RR42_RS17585at 3806.663 kb on + strand, within RR42_RS17585at 3806.663 kb on + strand, within RR42_RS17585at 3806.663 kb on + strand, within RR42_RS17585at 3806.663 kb on + strand, within RR42_RS17585at 3806.664 kb on - strand, within RR42_RS17585at 3806.664 kb on - strand, within RR42_RS17585at 3806.664 kb on - strand, within RR42_RS17585at 3806.664 kb on - strand, within RR42_RS17585at 3806.669 kb on + strand, within RR42_RS17585at 3806.669 kb on + strand, within RR42_RS17585at 3806.669 kb on + strand, within RR42_RS17585at 3806.670 kb on - strand, within RR42_RS17585at 3806.762 kb on + strand, within RR42_RS17585at 3807.327 kb on - strand, within RR42_RS17590at 3807.327 kb on - strand, within RR42_RS17590at 3807.378 kb on - strand, within RR42_RS17590at 3807.405 kb on - strand, within RR42_RS17590at 3807.552 kb on + strandat 3807.553 kb on - strandat 3807.596 kb on + strandat 3807.674 kb on + strandat 3807.675 kb on - strandat 3807.796 kb on - strand, within RR42_RS17595at 3807.796 kb on - strand, within RR42_RS17595at 3808.308 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,805,926 + RR42_RS17580 0.50 -0.2
3,806,072 - RR42_RS17580 0.68 +0.1
3,806,258 + +0.8
3,806,258 + +0.9
3,806,339 + -1.0
3,806,339 + +1.7
3,806,340 - +0.7
3,806,450 + +0.0
3,806,489 + RR42_RS17585 0.17 +0.5
3,806,489 + RR42_RS17585 0.17 -0.0
3,806,490 - RR42_RS17585 0.17 +0.6
3,806,490 - RR42_RS17585 0.17 +0.4
3,806,490 - RR42_RS17585 0.17 +1.0
3,806,490 - RR42_RS17585 0.17 -0.2
3,806,564 + RR42_RS17585 0.34 -0.3
3,806,564 + RR42_RS17585 0.34 -1.0
3,806,565 - RR42_RS17585 0.34 -1.9
3,806,663 + RR42_RS17585 0.56 -1.3
3,806,663 + RR42_RS17585 0.56 +0.6
3,806,663 + RR42_RS17585 0.56 +1.5
3,806,663 + RR42_RS17585 0.56 -1.0
3,806,664 - RR42_RS17585 0.57 -0.5
3,806,664 - RR42_RS17585 0.57 -0.3
3,806,664 - RR42_RS17585 0.57 +0.3
3,806,664 - RR42_RS17585 0.57 -0.4
3,806,669 + RR42_RS17585 0.58 +0.0
3,806,669 + RR42_RS17585 0.58 -0.3
3,806,669 + RR42_RS17585 0.58 +0.1
3,806,670 - RR42_RS17585 0.58 -0.8
3,806,762 + RR42_RS17585 0.79 +0.3
3,807,327 - RR42_RS17590 0.62 -1.7
3,807,327 - RR42_RS17590 0.62 -0.5
3,807,378 - RR42_RS17590 0.69 -1.3
3,807,405 - RR42_RS17590 0.73 -1.3
3,807,552 + -0.4
3,807,553 - +0.9
3,807,596 + -1.4
3,807,674 + -0.6
3,807,675 - -0.5
3,807,796 - RR42_RS17595 0.22 -1.2
3,807,796 - RR42_RS17595 0.22 -1.0
3,808,308 + -0.9

Or see this region's nucleotide sequence