Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17060

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS17050 and RR42_RS17055 are separated by 241 nucleotidesRR42_RS17055 and RR42_RS17060 are separated by 97 nucleotidesRR42_RS17060 and RR42_RS17065 are separated by 188 nucleotides RR42_RS17050: RR42_RS17050 - phosphoribosylglycinamide formyltransferase, at 3,692,588 to 3,693,244 _RS17050 RR42_RS17055: RR42_RS17055 - LuxR family transcriptional regulator, at 3,693,486 to 3,694,145 _RS17055 RR42_RS17060: RR42_RS17060 - histidine kinase, at 3,694,243 to 3,696,033 _RS17060 RR42_RS17065: RR42_RS17065 - riboflavin kinase, at 3,696,222 to 3,697,229 _RS17065 Position (kb) 3694 3695 3696 3697Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3693.255 kb on + strandat 3693.255 kb on + strandat 3693.256 kb on - strandat 3693.256 kb on - strandat 3693.256 kb on - strandat 3693.272 kb on + strandat 3693.273 kb on - strandat 3693.295 kb on - strandat 3693.303 kb on - strandat 3693.303 kb on - strandat 3693.303 kb on - strandat 3693.303 kb on - strandat 3693.303 kb on - strandat 3693.346 kb on - strandat 3693.347 kb on + strandat 3693.348 kb on - strandat 3693.348 kb on - strandat 3693.399 kb on - strandat 3693.399 kb on - strandat 3693.432 kb on - strandat 3693.530 kb on + strandat 3693.530 kb on + strandat 3693.530 kb on + strandat 3693.530 kb on + strandat 3693.530 kb on + strandat 3693.530 kb on + strandat 3693.531 kb on - strandat 3693.531 kb on - strandat 3693.531 kb on - strandat 3693.620 kb on + strand, within RR42_RS17055at 3693.620 kb on + strand, within RR42_RS17055at 3693.620 kb on + strand, within RR42_RS17055at 3693.620 kb on + strand, within RR42_RS17055at 3693.620 kb on + strand, within RR42_RS17055at 3693.621 kb on - strand, within RR42_RS17055at 3693.662 kb on + strand, within RR42_RS17055at 3693.663 kb on - strand, within RR42_RS17055at 3693.663 kb on - strand, within RR42_RS17055at 3693.680 kb on + strand, within RR42_RS17055at 3693.681 kb on - strand, within RR42_RS17055at 3693.718 kb on + strand, within RR42_RS17055at 3693.718 kb on + strand, within RR42_RS17055at 3693.718 kb on + strand, within RR42_RS17055at 3693.719 kb on - strand, within RR42_RS17055at 3693.734 kb on + strand, within RR42_RS17055at 3693.735 kb on - strandat 3694.316 kb on + strandat 3694.317 kb on - strandat 3694.317 kb on - strandat 3694.317 kb on - strandat 3694.317 kb on - strandat 3694.317 kb on - strandat 3694.317 kb on - strandat 3694.317 kb on - strandat 3694.317 kb on - strandat 3694.742 kb on + strand, within RR42_RS17060at 3694.742 kb on + strandat 3694.835 kb on + strand, within RR42_RS17060at 3694.835 kb on + strand, within RR42_RS17060at 3694.835 kb on + strand, within RR42_RS17060at 3694.836 kb on - strand, within RR42_RS17060at 3694.836 kb on - strand, within RR42_RS17060at 3694.836 kb on - strand, within RR42_RS17060at 3694.836 kb on - strand, within RR42_RS17060at 3694.839 kb on - strand, within RR42_RS17060at 3694.873 kb on - strand, within RR42_RS17060at 3694.908 kb on + strandat 3694.908 kb on + strand, within RR42_RS17060at 3694.909 kb on - strand, within RR42_RS17060at 3694.956 kb on + strandat 3694.956 kb on + strand, within RR42_RS17060at 3694.958 kb on + strand, within RR42_RS17060at 3694.959 kb on - strand, within RR42_RS17060at 3695.024 kb on + strand, within RR42_RS17060at 3695.024 kb on + strand, within RR42_RS17060at 3695.024 kb on + strand, within RR42_RS17060at 3695.025 kb on - strand, within RR42_RS17060at 3695.025 kb on - strand, within RR42_RS17060at 3695.480 kb on + strand, within RR42_RS17060at 3695.480 kb on + strand, within RR42_RS17060at 3695.481 kb on - strand, within RR42_RS17060at 3695.481 kb on - strand, within RR42_RS17060at 3695.481 kb on - strand, within RR42_RS17060at 3695.481 kb on - strand, within RR42_RS17060at 3695.504 kb on + strand, within RR42_RS17060at 3695.504 kb on + strand, within RR42_RS17060at 3695.504 kb on + strand, within RR42_RS17060at 3695.504 kb on + strand, within RR42_RS17060at 3695.504 kb on + strand, within RR42_RS17060at 3695.504 kb on + strand, within RR42_RS17060at 3695.504 kb on + strand, within RR42_RS17060at 3695.504 kb on + strand, within RR42_RS17060at 3695.504 kb on + strand, within RR42_RS17060at 3695.504 kb on + strandat 3695.504 kb on + strand, within RR42_RS17060at 3695.505 kb on - strand, within RR42_RS17060at 3695.505 kb on - strand, within RR42_RS17060at 3695.505 kb on - strand, within RR42_RS17060at 3695.505 kb on - strand, within RR42_RS17060at 3695.505 kb on - strand, within RR42_RS17060at 3695.505 kb on - strand, within RR42_RS17060at 3695.505 kb on - strand, within RR42_RS17060at 3695.505 kb on - strand, within RR42_RS17060at 3695.505 kb on - strand, within RR42_RS17060at 3695.505 kb on - strand, within RR42_RS17060at 3695.505 kb on - strand, within RR42_RS17060at 3695.505 kb on - strand, within RR42_RS17060at 3695.505 kb on - strand, within RR42_RS17060at 3695.528 kb on + strand, within RR42_RS17060at 3695.528 kb on + strand, within RR42_RS17060at 3695.573 kb on + strand, within RR42_RS17060at 3695.574 kb on - strand, within RR42_RS17060at 3695.574 kb on - strand, within RR42_RS17060at 3695.642 kb on + strand, within RR42_RS17060at 3695.642 kb on + strand, within RR42_RS17060at 3695.643 kb on - strand, within RR42_RS17060at 3695.643 kb on - strand, within RR42_RS17060at 3695.643 kb on - strand, within RR42_RS17060at 3695.675 kb on + strand, within RR42_RS17060at 3695.675 kb on + strand, within RR42_RS17060at 3695.675 kb on + strand, within RR42_RS17060at 3695.675 kb on + strand, within RR42_RS17060at 3695.675 kb on + strand, within RR42_RS17060at 3695.675 kb on + strand, within RR42_RS17060at 3695.676 kb on - strand, within RR42_RS17060at 3695.676 kb on - strand, within RR42_RS17060at 3695.736 kb on + strand, within RR42_RS17060at 3695.737 kb on - strand, within RR42_RS17060at 3695.795 kb on + strand, within RR42_RS17060at 3695.804 kb on + strand, within RR42_RS17060at 3695.865 kb on + strandat 3695.865 kb on + strandat 3695.865 kb on + strandat 3695.865 kb on + strandat 3695.866 kb on - strandat 3695.866 kb on - strandat 3695.866 kb on - strandat 3695.866 kb on - strandat 3695.866 kb on - strandat 3695.866 kb on - strandat 3695.866 kb on - strandat 3695.866 kb on - strandat 3696.020 kb on - strandat 3696.068 kb on + strandat 3696.068 kb on + strandat 3696.068 kb on + strandat 3696.068 kb on + strandat 3696.069 kb on - strandat 3696.185 kb on + strandat 3696.185 kb on + strandat 3696.185 kb on + strandat 3696.185 kb on + strandat 3696.185 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
3,693,255 + -0.4
3,693,255 + +0.0
3,693,256 - -1.1
3,693,256 - +0.6
3,693,256 - +0.8
3,693,272 + +0.7
3,693,273 - -0.3
3,693,295 - +0.5
3,693,303 - +1.4
3,693,303 - -1.4
3,693,303 - -0.0
3,693,303 - +0.9
3,693,303 - +1.4
3,693,346 - -0.2
3,693,347 + -0.2
3,693,348 - -0.3
3,693,348 - +0.1
3,693,399 - -2.1
3,693,399 - -1.8
3,693,432 - +1.2
3,693,530 + -0.6
3,693,530 + +0.2
3,693,530 + -0.2
3,693,530 + -0.6
3,693,530 + -0.3
3,693,530 + -1.6
3,693,531 - -0.3
3,693,531 - -2.2
3,693,531 - -1.8
3,693,620 + RR42_RS17055 0.20 -0.7
3,693,620 + RR42_RS17055 0.20 -0.6
3,693,620 + RR42_RS17055 0.20 -0.9
3,693,620 + RR42_RS17055 0.20 -0.6
3,693,620 + RR42_RS17055 0.20 -0.6
3,693,621 - RR42_RS17055 0.20 -1.0
3,693,662 + RR42_RS17055 0.27 -0.1
3,693,663 - RR42_RS17055 0.27 -2.1
3,693,663 - RR42_RS17055 0.27 -0.9
3,693,680 + RR42_RS17055 0.29 -0.6
3,693,681 - RR42_RS17055 0.30 -0.2
3,693,718 + RR42_RS17055 0.35 -1.3
3,693,718 + RR42_RS17055 0.35 -0.8
3,693,718 + RR42_RS17055 0.35 -2.4
3,693,719 - RR42_RS17055 0.35 -1.7
3,693,734 + RR42_RS17055 0.38 +1.1
3,693,735 - -0.9
3,694,316 + -0.5
3,694,317 - +0.9
3,694,317 - -3.1
3,694,317 - -0.6
3,694,317 - -1.8
3,694,317 - -1.5
3,694,317 - -4.6
3,694,317 - -1.8
3,694,317 - +0.1
3,694,742 + RR42_RS17060 0.28 -1.8
3,694,742 + +0.8
3,694,835 + RR42_RS17060 0.33 -1.9
3,694,835 + RR42_RS17060 0.33 -1.6
3,694,835 + RR42_RS17060 0.33 -2.4
3,694,836 - RR42_RS17060 0.33 -1.6
3,694,836 - RR42_RS17060 0.33 -0.3
3,694,836 - RR42_RS17060 0.33 -0.8
3,694,836 - RR42_RS17060 0.33 -0.7
3,694,839 - RR42_RS17060 0.33 -0.4
3,694,873 - RR42_RS17060 0.35 -3.4
3,694,908 + +1.4
3,694,908 + RR42_RS17060 0.37 -1.0
3,694,909 - RR42_RS17060 0.37 -1.5
3,694,956 + +2.4
3,694,956 + RR42_RS17060 0.40 -1.1
3,694,958 + RR42_RS17060 0.40 -2.2
3,694,959 - RR42_RS17060 0.40 -5.0
3,695,024 + RR42_RS17060 0.44 -0.3
3,695,024 + RR42_RS17060 0.44 -1.9
3,695,024 + RR42_RS17060 0.44 -1.5
3,695,025 - RR42_RS17060 0.44 -3.7
3,695,025 - RR42_RS17060 0.44 -0.5
3,695,480 + RR42_RS17060 0.69 -1.8
3,695,480 + RR42_RS17060 0.69 -3.4
3,695,481 - RR42_RS17060 0.69 -0.9
3,695,481 - RR42_RS17060 0.69 -1.6
3,695,481 - RR42_RS17060 0.69 +0.1
3,695,481 - RR42_RS17060 0.69 -2.4
3,695,504 + RR42_RS17060 0.70 +0.6
3,695,504 + RR42_RS17060 0.70 -1.6
3,695,504 + RR42_RS17060 0.70 -3.5
3,695,504 + RR42_RS17060 0.70 -3.3
3,695,504 + RR42_RS17060 0.70 -1.6
3,695,504 + RR42_RS17060 0.70 -0.6
3,695,504 + RR42_RS17060 0.70 -1.0
3,695,504 + RR42_RS17060 0.70 -3.3
3,695,504 + RR42_RS17060 0.70 -2.3
3,695,504 + -0.2
3,695,504 + RR42_RS17060 0.70 -1.1
3,695,505 - RR42_RS17060 0.70 -1.4
3,695,505 - RR42_RS17060 0.70 -0.9
3,695,505 - RR42_RS17060 0.70 -2.9
3,695,505 - RR42_RS17060 0.70 -2.0
3,695,505 - RR42_RS17060 0.70 -2.9
3,695,505 - RR42_RS17060 0.70 -0.6
3,695,505 - RR42_RS17060 0.70 -1.8
3,695,505 - RR42_RS17060 0.70 -0.4
3,695,505 - RR42_RS17060 0.70 +0.3
3,695,505 - RR42_RS17060 0.70 -0.9
3,695,505 - RR42_RS17060 0.70 +0.1
3,695,505 - RR42_RS17060 0.70 -0.7
3,695,505 - RR42_RS17060 0.70 -2.0
3,695,528 + RR42_RS17060 0.72 -1.3
3,695,528 + RR42_RS17060 0.72 -1.9
3,695,573 + RR42_RS17060 0.74 -0.4
3,695,574 - RR42_RS17060 0.74 -1.0
3,695,574 - RR42_RS17060 0.74 -1.8
3,695,642 + RR42_RS17060 0.78 -0.6
3,695,642 + RR42_RS17060 0.78 -0.6
3,695,643 - RR42_RS17060 0.78 -1.8
3,695,643 - RR42_RS17060 0.78 -0.3
3,695,643 - RR42_RS17060 0.78 -1.4
3,695,675 + RR42_RS17060 0.80 -1.2
3,695,675 + RR42_RS17060 0.80 -1.9
3,695,675 + RR42_RS17060 0.80 -1.3
3,695,675 + RR42_RS17060 0.80 -0.5
3,695,675 + RR42_RS17060 0.80 -1.2
3,695,675 + RR42_RS17060 0.80 -4.9
3,695,676 - RR42_RS17060 0.80 -1.8
3,695,676 - RR42_RS17060 0.80 +0.3
3,695,736 + RR42_RS17060 0.83 -2.1
3,695,737 - RR42_RS17060 0.83 -2.7
3,695,795 + RR42_RS17060 0.87 -1.3
3,695,804 + RR42_RS17060 0.87 -1.0
3,695,865 + -1.4
3,695,865 + -2.6
3,695,865 + +0.0
3,695,865 + -1.3
3,695,866 - -1.0
3,695,866 - -1.5
3,695,866 - +0.8
3,695,866 - -0.6
3,695,866 - -0.3
3,695,866 - -1.0
3,695,866 - -1.6
3,695,866 - -1.9
3,696,020 - +0.4
3,696,068 + +0.8
3,696,068 + +1.4
3,696,068 + -0.7
3,696,068 + +0.3
3,696,069 - -1.4
3,696,185 + -0.8
3,696,185 + +0.3
3,696,185 + +2.4
3,696,185 + -0.2
3,696,185 + +0.5

Or see this region's nucleotide sequence