Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17050 and RR42_RS17055 are separated by 241 nucleotides RR42_RS17055 and RR42_RS17060 are separated by 97 nucleotides RR42_RS17060 and RR42_RS17065 are separated by 188 nucleotides
RR42_RS17050: RR42_RS17050 - phosphoribosylglycinamide formyltransferase, at 3,692,588 to 3,693,244
_RS17050
RR42_RS17055: RR42_RS17055 - LuxR family transcriptional regulator, at 3,693,486 to 3,694,145
_RS17055
RR42_RS17060: RR42_RS17060 - histidine kinase, at 3,694,243 to 3,696,033
_RS17060
RR42_RS17065: RR42_RS17065 - riboflavin kinase, at 3,696,222 to 3,697,229
_RS17065
Position (kb)
3694
3695
3696
3697 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3693.255 kb on + strand at 3693.255 kb on + strand at 3693.256 kb on - strand at 3693.256 kb on - strand at 3693.256 kb on - strand at 3693.272 kb on + strand at 3693.273 kb on - strand at 3693.295 kb on - strand at 3693.303 kb on - strand at 3693.303 kb on - strand at 3693.303 kb on - strand at 3693.303 kb on - strand at 3693.303 kb on - strand at 3693.346 kb on - strand at 3693.347 kb on + strand at 3693.348 kb on - strand at 3693.348 kb on - strand at 3693.399 kb on - strand at 3693.399 kb on - strand at 3693.432 kb on - strand at 3693.530 kb on + strand at 3693.530 kb on + strand at 3693.530 kb on + strand at 3693.530 kb on + strand at 3693.530 kb on + strand at 3693.530 kb on + strand at 3693.531 kb on - strand at 3693.531 kb on - strand at 3693.531 kb on - strand at 3693.620 kb on + strand, within RR42_RS17055 at 3693.620 kb on + strand, within RR42_RS17055 at 3693.620 kb on + strand, within RR42_RS17055 at 3693.620 kb on + strand, within RR42_RS17055 at 3693.620 kb on + strand, within RR42_RS17055 at 3693.621 kb on - strand, within RR42_RS17055 at 3693.662 kb on + strand, within RR42_RS17055 at 3693.663 kb on - strand, within RR42_RS17055 at 3693.663 kb on - strand, within RR42_RS17055 at 3693.680 kb on + strand, within RR42_RS17055 at 3693.681 kb on - strand, within RR42_RS17055 at 3693.718 kb on + strand, within RR42_RS17055 at 3693.718 kb on + strand, within RR42_RS17055 at 3693.718 kb on + strand, within RR42_RS17055 at 3693.719 kb on - strand, within RR42_RS17055 at 3693.734 kb on + strand, within RR42_RS17055 at 3693.735 kb on - strand at 3694.316 kb on + strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.742 kb on + strand, within RR42_RS17060 at 3694.742 kb on + strand at 3694.835 kb on + strand, within RR42_RS17060 at 3694.835 kb on + strand, within RR42_RS17060 at 3694.835 kb on + strand, within RR42_RS17060 at 3694.836 kb on - strand, within RR42_RS17060 at 3694.836 kb on - strand, within RR42_RS17060 at 3694.836 kb on - strand, within RR42_RS17060 at 3694.836 kb on - strand, within RR42_RS17060 at 3694.839 kb on - strand, within RR42_RS17060 at 3694.873 kb on - strand, within RR42_RS17060 at 3694.908 kb on + strand at 3694.908 kb on + strand, within RR42_RS17060 at 3694.909 kb on - strand, within RR42_RS17060 at 3694.956 kb on + strand at 3694.956 kb on + strand, within RR42_RS17060 at 3694.958 kb on + strand, within RR42_RS17060 at 3694.959 kb on - strand, within RR42_RS17060 at 3695.024 kb on + strand, within RR42_RS17060 at 3695.024 kb on + strand, within RR42_RS17060 at 3695.024 kb on + strand, within RR42_RS17060 at 3695.025 kb on - strand, within RR42_RS17060 at 3695.025 kb on - strand, within RR42_RS17060 at 3695.480 kb on + strand, within RR42_RS17060 at 3695.480 kb on + strand, within RR42_RS17060 at 3695.481 kb on - strand, within RR42_RS17060 at 3695.481 kb on - strand, within RR42_RS17060 at 3695.481 kb on - strand, within RR42_RS17060 at 3695.481 kb on - strand, within RR42_RS17060 at 3695.504 kb on + strand, within RR42_RS17060 at 3695.504 kb on + strand, within RR42_RS17060 at 3695.504 kb on + strand, within RR42_RS17060 at 3695.504 kb on + strand, within RR42_RS17060 at 3695.504 kb on + strand, within RR42_RS17060 at 3695.504 kb on + strand, within RR42_RS17060 at 3695.504 kb on + strand, within RR42_RS17060 at 3695.504 kb on + strand, within RR42_RS17060 at 3695.504 kb on + strand, within RR42_RS17060 at 3695.504 kb on + strand at 3695.504 kb on + strand, within RR42_RS17060 at 3695.505 kb on - strand, within RR42_RS17060 at 3695.505 kb on - strand, within RR42_RS17060 at 3695.505 kb on - strand, within RR42_RS17060 at 3695.505 kb on - strand, within RR42_RS17060 at 3695.505 kb on - strand, within RR42_RS17060 at 3695.505 kb on - strand, within RR42_RS17060 at 3695.505 kb on - strand, within RR42_RS17060 at 3695.505 kb on - strand, within RR42_RS17060 at 3695.505 kb on - strand, within RR42_RS17060 at 3695.505 kb on - strand, within RR42_RS17060 at 3695.505 kb on - strand, within RR42_RS17060 at 3695.505 kb on - strand, within RR42_RS17060 at 3695.505 kb on - strand, within RR42_RS17060 at 3695.528 kb on + strand, within RR42_RS17060 at 3695.528 kb on + strand, within RR42_RS17060 at 3695.573 kb on + strand, within RR42_RS17060 at 3695.574 kb on - strand, within RR42_RS17060 at 3695.574 kb on - strand, within RR42_RS17060 at 3695.642 kb on + strand, within RR42_RS17060 at 3695.642 kb on + strand, within RR42_RS17060 at 3695.643 kb on - strand, within RR42_RS17060 at 3695.643 kb on - strand, within RR42_RS17060 at 3695.643 kb on - strand, within RR42_RS17060 at 3695.675 kb on + strand, within RR42_RS17060 at 3695.675 kb on + strand, within RR42_RS17060 at 3695.675 kb on + strand, within RR42_RS17060 at 3695.675 kb on + strand, within RR42_RS17060 at 3695.675 kb on + strand, within RR42_RS17060 at 3695.675 kb on + strand, within RR42_RS17060 at 3695.676 kb on - strand, within RR42_RS17060 at 3695.676 kb on - strand, within RR42_RS17060 at 3695.736 kb on + strand, within RR42_RS17060 at 3695.737 kb on - strand, within RR42_RS17060 at 3695.795 kb on + strand, within RR42_RS17060 at 3695.804 kb on + strand, within RR42_RS17060 at 3695.865 kb on + strand at 3695.865 kb on + strand at 3695.865 kb on + strand at 3695.865 kb on + strand at 3695.866 kb on - strand at 3695.866 kb on - strand at 3695.866 kb on - strand at 3695.866 kb on - strand at 3695.866 kb on - strand at 3695.866 kb on - strand at 3695.866 kb on - strand at 3695.866 kb on - strand at 3696.020 kb on - strand at 3696.068 kb on + strand at 3696.068 kb on + strand at 3696.068 kb on + strand at 3696.068 kb on + strand at 3696.069 kb on - strand at 3696.185 kb on + strand at 3696.185 kb on + strand at 3696.185 kb on + strand at 3696.185 kb on + strand at 3696.185 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,693,255 + -0.4 3,693,255 + +0.0 3,693,256 - -1.1 3,693,256 - +0.6 3,693,256 - +0.8 3,693,272 + +0.7 3,693,273 - -0.3 3,693,295 - +0.5 3,693,303 - +1.4 3,693,303 - -1.4 3,693,303 - -0.0 3,693,303 - +0.9 3,693,303 - +1.4 3,693,346 - -0.2 3,693,347 + -0.2 3,693,348 - -0.3 3,693,348 - +0.1 3,693,399 - -2.1 3,693,399 - -1.8 3,693,432 - +1.2 3,693,530 + -0.6 3,693,530 + +0.2 3,693,530 + -0.2 3,693,530 + -0.6 3,693,530 + -0.3 3,693,530 + -1.6 3,693,531 - -0.3 3,693,531 - -2.2 3,693,531 - -1.8 3,693,620 + RR42_RS17055 0.20 -0.7 3,693,620 + RR42_RS17055 0.20 -0.6 3,693,620 + RR42_RS17055 0.20 -0.9 3,693,620 + RR42_RS17055 0.20 -0.6 3,693,620 + RR42_RS17055 0.20 -0.6 3,693,621 - RR42_RS17055 0.20 -1.0 3,693,662 + RR42_RS17055 0.27 -0.1 3,693,663 - RR42_RS17055 0.27 -2.1 3,693,663 - RR42_RS17055 0.27 -0.9 3,693,680 + RR42_RS17055 0.29 -0.6 3,693,681 - RR42_RS17055 0.30 -0.2 3,693,718 + RR42_RS17055 0.35 -1.3 3,693,718 + RR42_RS17055 0.35 -0.8 3,693,718 + RR42_RS17055 0.35 -2.4 3,693,719 - RR42_RS17055 0.35 -1.7 3,693,734 + RR42_RS17055 0.38 +1.1 3,693,735 - -0.9 3,694,316 + -0.5 3,694,317 - +0.9 3,694,317 - -3.1 3,694,317 - -0.6 3,694,317 - -1.8 3,694,317 - -1.5 3,694,317 - -4.6 3,694,317 - -1.8 3,694,317 - +0.1 3,694,742 + RR42_RS17060 0.28 -1.8 3,694,742 + +0.8 3,694,835 + RR42_RS17060 0.33 -1.9 3,694,835 + RR42_RS17060 0.33 -1.6 3,694,835 + RR42_RS17060 0.33 -2.4 3,694,836 - RR42_RS17060 0.33 -1.6 3,694,836 - RR42_RS17060 0.33 -0.3 3,694,836 - RR42_RS17060 0.33 -0.8 3,694,836 - RR42_RS17060 0.33 -0.7 3,694,839 - RR42_RS17060 0.33 -0.4 3,694,873 - RR42_RS17060 0.35 -3.4 3,694,908 + +1.4 3,694,908 + RR42_RS17060 0.37 -1.0 3,694,909 - RR42_RS17060 0.37 -1.5 3,694,956 + +2.4 3,694,956 + RR42_RS17060 0.40 -1.1 3,694,958 + RR42_RS17060 0.40 -2.2 3,694,959 - RR42_RS17060 0.40 -5.0 3,695,024 + RR42_RS17060 0.44 -0.3 3,695,024 + RR42_RS17060 0.44 -1.9 3,695,024 + RR42_RS17060 0.44 -1.5 3,695,025 - RR42_RS17060 0.44 -3.7 3,695,025 - RR42_RS17060 0.44 -0.5 3,695,480 + RR42_RS17060 0.69 -1.8 3,695,480 + RR42_RS17060 0.69 -3.4 3,695,481 - RR42_RS17060 0.69 -0.9 3,695,481 - RR42_RS17060 0.69 -1.6 3,695,481 - RR42_RS17060 0.69 +0.1 3,695,481 - RR42_RS17060 0.69 -2.4 3,695,504 + RR42_RS17060 0.70 +0.6 3,695,504 + RR42_RS17060 0.70 -1.6 3,695,504 + RR42_RS17060 0.70 -3.5 3,695,504 + RR42_RS17060 0.70 -3.3 3,695,504 + RR42_RS17060 0.70 -1.6 3,695,504 + RR42_RS17060 0.70 -0.6 3,695,504 + RR42_RS17060 0.70 -1.0 3,695,504 + RR42_RS17060 0.70 -3.3 3,695,504 + RR42_RS17060 0.70 -2.3 3,695,504 + -0.2 3,695,504 + RR42_RS17060 0.70 -1.1 3,695,505 - RR42_RS17060 0.70 -1.4 3,695,505 - RR42_RS17060 0.70 -0.9 3,695,505 - RR42_RS17060 0.70 -2.9 3,695,505 - RR42_RS17060 0.70 -2.0 3,695,505 - RR42_RS17060 0.70 -2.9 3,695,505 - RR42_RS17060 0.70 -0.6 3,695,505 - RR42_RS17060 0.70 -1.8 3,695,505 - RR42_RS17060 0.70 -0.4 3,695,505 - RR42_RS17060 0.70 +0.3 3,695,505 - RR42_RS17060 0.70 -0.9 3,695,505 - RR42_RS17060 0.70 +0.1 3,695,505 - RR42_RS17060 0.70 -0.7 3,695,505 - RR42_RS17060 0.70 -2.0 3,695,528 + RR42_RS17060 0.72 -1.3 3,695,528 + RR42_RS17060 0.72 -1.9 3,695,573 + RR42_RS17060 0.74 -0.4 3,695,574 - RR42_RS17060 0.74 -1.0 3,695,574 - RR42_RS17060 0.74 -1.8 3,695,642 + RR42_RS17060 0.78 -0.6 3,695,642 + RR42_RS17060 0.78 -0.6 3,695,643 - RR42_RS17060 0.78 -1.8 3,695,643 - RR42_RS17060 0.78 -0.3 3,695,643 - RR42_RS17060 0.78 -1.4 3,695,675 + RR42_RS17060 0.80 -1.2 3,695,675 + RR42_RS17060 0.80 -1.9 3,695,675 + RR42_RS17060 0.80 -1.3 3,695,675 + RR42_RS17060 0.80 -0.5 3,695,675 + RR42_RS17060 0.80 -1.2 3,695,675 + RR42_RS17060 0.80 -4.9 3,695,676 - RR42_RS17060 0.80 -1.8 3,695,676 - RR42_RS17060 0.80 +0.3 3,695,736 + RR42_RS17060 0.83 -2.1 3,695,737 - RR42_RS17060 0.83 -2.7 3,695,795 + RR42_RS17060 0.87 -1.3 3,695,804 + RR42_RS17060 0.87 -1.0 3,695,865 + -1.4 3,695,865 + -2.6 3,695,865 + +0.0 3,695,865 + -1.3 3,695,866 - -1.0 3,695,866 - -1.5 3,695,866 - +0.8 3,695,866 - -0.6 3,695,866 - -0.3 3,695,866 - -1.0 3,695,866 - -1.6 3,695,866 - -1.9 3,696,020 - +0.4 3,696,068 + +0.8 3,696,068 + +1.4 3,696,068 + -0.7 3,696,068 + +0.3 3,696,069 - -1.4 3,696,185 + -0.8 3,696,185 + +0.3 3,696,185 + +2.4 3,696,185 + -0.2 3,696,185 + +0.5
Or see this region's nucleotide sequence