Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16945

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16940 and RR42_RS16945 are separated by 466 nucleotidesRR42_RS16945 and RR42_RS16950 are separated by 9 nucleotides RR42_RS16940: RR42_RS16940 - ABC transporter permease, at 3,666,252 to 3,667,223 _RS16940 RR42_RS16945: RR42_RS16945 - NAD-dependent dehydratase, at 3,667,690 to 3,668,670 _RS16945 RR42_RS16950: RR42_RS16950 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 3,668,680 to 3,669,744 _RS16950 Position (kb) 3667 3668 3669Strain fitness (log2 ratio) -2 -1 0 1at 3666.790 kb on + strand, within RR42_RS16940at 3666.894 kb on - strand, within RR42_RS16940at 3667.179 kb on + strandat 3667.192 kb on - strandat 3667.199 kb on + strandat 3667.200 kb on - strandat 3667.306 kb on - strandat 3667.337 kb on + strandat 3667.337 kb on + strandat 3667.338 kb on - strandat 3667.338 kb on - strandat 3667.338 kb on - strandat 3667.349 kb on - strandat 3667.349 kb on - strandat 3667.352 kb on + strandat 3667.410 kb on + strandat 3667.411 kb on - strandat 3667.411 kb on - strandat 3667.411 kb on - strandat 3667.461 kb on + strandat 3667.578 kb on - strandat 3667.688 kb on - strandat 3667.884 kb on - strand, within RR42_RS16945at 3667.998 kb on + strand, within RR42_RS16945at 3667.998 kb on + strand, within RR42_RS16945at 3667.998 kb on + strand, within RR42_RS16945at 3667.999 kb on - strand, within RR42_RS16945at 3668.000 kb on + strand, within RR42_RS16945at 3668.000 kb on + strand, within RR42_RS16945at 3668.000 kb on + strand, within RR42_RS16945at 3668.000 kb on + strand, within RR42_RS16945at 3668.001 kb on - strand, within RR42_RS16945at 3668.001 kb on - strand, within RR42_RS16945at 3668.001 kb on - strand, within RR42_RS16945at 3668.001 kb on - strand, within RR42_RS16945at 3668.001 kb on - strand, within RR42_RS16945at 3668.072 kb on + strand, within RR42_RS16945at 3668.072 kb on + strand, within RR42_RS16945at 3668.073 kb on - strand, within RR42_RS16945at 3668.289 kb on - strand, within RR42_RS16945at 3668.578 kb on + strandat 3668.578 kb on + strandat 3668.578 kb on + strandat 3668.578 kb on + strandat 3668.583 kb on + strandat 3668.583 kb on + strandat 3668.583 kb on + strandat 3668.583 kb on + strandat 3668.627 kb on - strandat 3668.670 kb on + strandat 3668.670 kb on + strandat 3668.670 kb on + strandat 3668.671 kb on - strandat 3668.671 kb on - strandat 3668.676 kb on + strandat 3668.676 kb on + strandat 3668.676 kb on + strandat 3668.676 kb on + strandat 3668.676 kb on + strandat 3668.677 kb on - strandat 3668.679 kb on + strandat 3668.679 kb on + strandat 3668.680 kb on - strandat 3668.687 kb on - strandat 3668.694 kb on + strandat 3668.748 kb on + strandat 3668.782 kb on + strandat 3669.089 kb on - strand, within RR42_RS16950at 3669.089 kb on - strand, within RR42_RS16950at 3669.127 kb on + strand, within RR42_RS16950at 3669.183 kb on + strand, within RR42_RS16950at 3669.208 kb on + strand, within RR42_RS16950at 3669.208 kb on + strand, within RR42_RS16950at 3669.209 kb on - strand, within RR42_RS16950at 3669.439 kb on + strand, within RR42_RS16950at 3669.440 kb on - strand, within RR42_RS16950at 3669.602 kb on - strand, within RR42_RS16950at 3669.602 kb on - strand, within RR42_RS16950

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,666,790 + RR42_RS16940 0.55 +0.2
3,666,894 - RR42_RS16940 0.66 -0.2
3,667,179 + -0.3
3,667,192 - +0.2
3,667,199 + +0.9
3,667,200 - +0.1
3,667,306 - +0.1
3,667,337 + -0.7
3,667,337 + -0.6
3,667,338 - +0.2
3,667,338 - -0.8
3,667,338 - +0.0
3,667,349 - +0.6
3,667,349 - -1.1
3,667,352 + -0.1
3,667,410 + -0.8
3,667,411 - -1.2
3,667,411 - -0.5
3,667,411 - -0.1
3,667,461 + -2.2
3,667,578 - -2.3
3,667,688 - -1.4
3,667,884 - RR42_RS16945 0.20 -1.5
3,667,998 + RR42_RS16945 0.31 -2.3
3,667,998 + RR42_RS16945 0.31 -0.9
3,667,998 + RR42_RS16945 0.31 -0.7
3,667,999 - RR42_RS16945 0.31 -0.2
3,668,000 + RR42_RS16945 0.32 -0.5
3,668,000 + RR42_RS16945 0.32 -0.5
3,668,000 + RR42_RS16945 0.32 -0.4
3,668,000 + RR42_RS16945 0.32 -2.1
3,668,001 - RR42_RS16945 0.32 +1.4
3,668,001 - RR42_RS16945 0.32 -1.4
3,668,001 - RR42_RS16945 0.32 -1.1
3,668,001 - RR42_RS16945 0.32 -1.2
3,668,001 - RR42_RS16945 0.32 -2.2
3,668,072 + RR42_RS16945 0.39 +0.4
3,668,072 + RR42_RS16945 0.39 -0.4
3,668,073 - RR42_RS16945 0.39 -1.0
3,668,289 - RR42_RS16945 0.61 -1.7
3,668,578 + +1.0
3,668,578 + -0.4
3,668,578 + -1.2
3,668,578 + +0.2
3,668,583 + -2.6
3,668,583 + -1.4
3,668,583 + +0.6
3,668,583 + -0.9
3,668,627 - -0.8
3,668,670 + +0.2
3,668,670 + -0.5
3,668,670 + +1.0
3,668,671 - +0.0
3,668,671 - -0.2
3,668,676 + -0.5
3,668,676 + -0.1
3,668,676 + -0.9
3,668,676 + -1.8
3,668,676 + +0.8
3,668,677 - -2.2
3,668,679 + +1.0
3,668,679 + +0.5
3,668,680 - +1.1
3,668,687 - -1.4
3,668,694 + +0.6
3,668,748 + -0.6
3,668,782 + -0.6
3,669,089 - RR42_RS16950 0.38 -1.2
3,669,089 - RR42_RS16950 0.38 -1.1
3,669,127 + RR42_RS16950 0.42 -1.0
3,669,183 + RR42_RS16950 0.47 -1.9
3,669,208 + RR42_RS16950 0.50 -1.1
3,669,208 + RR42_RS16950 0.50 -1.6
3,669,209 - RR42_RS16950 0.50 -1.7
3,669,439 + RR42_RS16950 0.71 +0.3
3,669,440 - RR42_RS16950 0.71 -0.2
3,669,602 - RR42_RS16950 0.87 +0.0
3,669,602 - RR42_RS16950 0.87 +0.4

Or see this region's nucleotide sequence