Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16940 and RR42_RS16945 are separated by 466 nucleotides RR42_RS16945 and RR42_RS16950 are separated by 9 nucleotides
RR42_RS16940: RR42_RS16940 - ABC transporter permease, at 3,666,252 to 3,667,223
_RS16940
RR42_RS16945: RR42_RS16945 - NAD-dependent dehydratase, at 3,667,690 to 3,668,670
_RS16945
RR42_RS16950: RR42_RS16950 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 3,668,680 to 3,669,744
_RS16950
Position (kb)
3667
3668
3669 Strain fitness (log2 ratio)
-2
-1
0
1 at 3666.790 kb on + strand, within RR42_RS16940 at 3666.894 kb on - strand, within RR42_RS16940 at 3667.179 kb on + strand at 3667.192 kb on - strand at 3667.199 kb on + strand at 3667.200 kb on - strand at 3667.306 kb on - strand at 3667.337 kb on + strand at 3667.337 kb on + strand at 3667.338 kb on - strand at 3667.338 kb on - strand at 3667.338 kb on - strand at 3667.349 kb on - strand at 3667.349 kb on - strand at 3667.352 kb on + strand at 3667.410 kb on + strand at 3667.411 kb on - strand at 3667.411 kb on - strand at 3667.411 kb on - strand at 3667.461 kb on + strand at 3667.578 kb on - strand at 3667.688 kb on - strand at 3667.884 kb on - strand, within RR42_RS16945 at 3667.998 kb on + strand, within RR42_RS16945 at 3667.998 kb on + strand, within RR42_RS16945 at 3667.998 kb on + strand, within RR42_RS16945 at 3667.999 kb on - strand, within RR42_RS16945 at 3668.000 kb on + strand, within RR42_RS16945 at 3668.000 kb on + strand, within RR42_RS16945 at 3668.000 kb on + strand, within RR42_RS16945 at 3668.000 kb on + strand, within RR42_RS16945 at 3668.001 kb on - strand, within RR42_RS16945 at 3668.001 kb on - strand, within RR42_RS16945 at 3668.001 kb on - strand, within RR42_RS16945 at 3668.001 kb on - strand, within RR42_RS16945 at 3668.001 kb on - strand, within RR42_RS16945 at 3668.072 kb on + strand, within RR42_RS16945 at 3668.072 kb on + strand, within RR42_RS16945 at 3668.073 kb on - strand, within RR42_RS16945 at 3668.289 kb on - strand, within RR42_RS16945 at 3668.578 kb on + strand at 3668.578 kb on + strand at 3668.578 kb on + strand at 3668.578 kb on + strand at 3668.583 kb on + strand at 3668.583 kb on + strand at 3668.583 kb on + strand at 3668.583 kb on + strand at 3668.627 kb on - strand at 3668.670 kb on + strand at 3668.670 kb on + strand at 3668.670 kb on + strand at 3668.671 kb on - strand at 3668.671 kb on - strand at 3668.676 kb on + strand at 3668.676 kb on + strand at 3668.676 kb on + strand at 3668.676 kb on + strand at 3668.676 kb on + strand at 3668.677 kb on - strand at 3668.679 kb on + strand at 3668.679 kb on + strand at 3668.680 kb on - strand at 3668.687 kb on - strand at 3668.694 kb on + strand at 3668.748 kb on + strand at 3668.782 kb on + strand at 3669.089 kb on - strand, within RR42_RS16950 at 3669.089 kb on - strand, within RR42_RS16950 at 3669.127 kb on + strand, within RR42_RS16950 at 3669.183 kb on + strand, within RR42_RS16950 at 3669.208 kb on + strand, within RR42_RS16950 at 3669.208 kb on + strand, within RR42_RS16950 at 3669.209 kb on - strand, within RR42_RS16950 at 3669.439 kb on + strand, within RR42_RS16950 at 3669.440 kb on - strand, within RR42_RS16950 at 3669.602 kb on - strand, within RR42_RS16950 at 3669.602 kb on - strand, within RR42_RS16950
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,666,790 + RR42_RS16940 0.55 +0.2 3,666,894 - RR42_RS16940 0.66 -0.2 3,667,179 + -0.3 3,667,192 - +0.2 3,667,199 + +0.9 3,667,200 - +0.1 3,667,306 - +0.1 3,667,337 + -0.7 3,667,337 + -0.6 3,667,338 - +0.2 3,667,338 - -0.8 3,667,338 - +0.0 3,667,349 - +0.6 3,667,349 - -1.1 3,667,352 + -0.1 3,667,410 + -0.8 3,667,411 - -1.2 3,667,411 - -0.5 3,667,411 - -0.1 3,667,461 + -2.2 3,667,578 - -2.3 3,667,688 - -1.4 3,667,884 - RR42_RS16945 0.20 -1.5 3,667,998 + RR42_RS16945 0.31 -2.3 3,667,998 + RR42_RS16945 0.31 -0.9 3,667,998 + RR42_RS16945 0.31 -0.7 3,667,999 - RR42_RS16945 0.31 -0.2 3,668,000 + RR42_RS16945 0.32 -0.5 3,668,000 + RR42_RS16945 0.32 -0.5 3,668,000 + RR42_RS16945 0.32 -0.4 3,668,000 + RR42_RS16945 0.32 -2.1 3,668,001 - RR42_RS16945 0.32 +1.4 3,668,001 - RR42_RS16945 0.32 -1.4 3,668,001 - RR42_RS16945 0.32 -1.1 3,668,001 - RR42_RS16945 0.32 -1.2 3,668,001 - RR42_RS16945 0.32 -2.2 3,668,072 + RR42_RS16945 0.39 +0.4 3,668,072 + RR42_RS16945 0.39 -0.4 3,668,073 - RR42_RS16945 0.39 -1.0 3,668,289 - RR42_RS16945 0.61 -1.7 3,668,578 + +1.0 3,668,578 + -0.4 3,668,578 + -1.2 3,668,578 + +0.2 3,668,583 + -2.6 3,668,583 + -1.4 3,668,583 + +0.6 3,668,583 + -0.9 3,668,627 - -0.8 3,668,670 + +0.2 3,668,670 + -0.5 3,668,670 + +1.0 3,668,671 - +0.0 3,668,671 - -0.2 3,668,676 + -0.5 3,668,676 + -0.1 3,668,676 + -0.9 3,668,676 + -1.8 3,668,676 + +0.8 3,668,677 - -2.2 3,668,679 + +1.0 3,668,679 + +0.5 3,668,680 - +1.1 3,668,687 - -1.4 3,668,694 + +0.6 3,668,748 + -0.6 3,668,782 + -0.6 3,669,089 - RR42_RS16950 0.38 -1.2 3,669,089 - RR42_RS16950 0.38 -1.1 3,669,127 + RR42_RS16950 0.42 -1.0 3,669,183 + RR42_RS16950 0.47 -1.9 3,669,208 + RR42_RS16950 0.50 -1.1 3,669,208 + RR42_RS16950 0.50 -1.6 3,669,209 - RR42_RS16950 0.50 -1.7 3,669,439 + RR42_RS16950 0.71 +0.3 3,669,440 - RR42_RS16950 0.71 -0.2 3,669,602 - RR42_RS16950 0.87 +0.0 3,669,602 - RR42_RS16950 0.87 +0.4
Or see this region's nucleotide sequence