Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16715

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16705 and RR42_RS16710 are separated by 195 nucleotidesRR42_RS16710 and RR42_RS16715 are separated by 108 nucleotidesRR42_RS16715 and RR42_RS16720 are separated by 577 nucleotides RR42_RS16705: RR42_RS16705 - proline iminopeptidase, at 3,616,221 to 3,617,177 _RS16705 RR42_RS16710: RR42_RS16710 - endoribonuclease L-PSP, at 3,617,373 to 3,617,753 _RS16710 RR42_RS16715: RR42_RS16715 - hypothetical protein, at 3,617,862 to 3,618,164 _RS16715 RR42_RS16720: RR42_RS16720 - hypothetical protein, at 3,618,742 to 3,619,263 _RS16720 Position (kb) 3617 3618 3619Strain fitness (log2 ratio) -2 -1 0 1at 3616.926 kb on + strand, within RR42_RS16705at 3616.927 kb on - strand, within RR42_RS16705at 3617.002 kb on + strand, within RR42_RS16705at 3617.049 kb on + strand, within RR42_RS16705at 3617.282 kb on + strandat 3617.282 kb on + strandat 3617.283 kb on - strandat 3617.283 kb on - strandat 3617.373 kb on - strandat 3617.373 kb on - strandat 3617.444 kb on + strand, within RR42_RS16710at 3617.444 kb on + strand, within RR42_RS16710at 3617.445 kb on - strand, within RR42_RS16710at 3617.445 kb on - strand, within RR42_RS16710at 3617.445 kb on - strand, within RR42_RS16710at 3617.451 kb on + strand, within RR42_RS16710at 3617.643 kb on + strand, within RR42_RS16710at 3617.644 kb on - strand, within RR42_RS16710at 3617.644 kb on - strand, within RR42_RS16710at 3617.795 kb on - strandat 3618.053 kb on + strand, within RR42_RS16715at 3618.133 kb on - strand, within RR42_RS16715at 3618.224 kb on + strandat 3618.319 kb on + strandat 3618.320 kb on - strandat 3618.370 kb on - strandat 3618.371 kb on + strandat 3618.371 kb on - strandat 3618.372 kb on - strandat 3618.372 kb on - strandat 3618.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,616,926 + RR42_RS16705 0.74 +0.3
3,616,927 - RR42_RS16705 0.74 -2.0
3,617,002 + RR42_RS16705 0.82 +0.1
3,617,049 + RR42_RS16705 0.87 -0.6
3,617,282 + -0.9
3,617,282 + +1.7
3,617,283 - -1.0
3,617,283 - -0.2
3,617,373 - -0.8
3,617,373 - -0.3
3,617,444 + RR42_RS16710 0.19 -1.8
3,617,444 + RR42_RS16710 0.19 -1.4
3,617,445 - RR42_RS16710 0.19 -2.5
3,617,445 - RR42_RS16710 0.19 -1.6
3,617,445 - RR42_RS16710 0.19 -0.1
3,617,451 + RR42_RS16710 0.20 -0.8
3,617,643 + RR42_RS16710 0.71 +0.7
3,617,644 - RR42_RS16710 0.71 -0.2
3,617,644 - RR42_RS16710 0.71 -0.3
3,617,795 - +0.1
3,618,053 + RR42_RS16715 0.63 -1.2
3,618,133 - RR42_RS16715 0.89 -1.1
3,618,224 + +0.2
3,618,319 + +1.0
3,618,320 - -0.6
3,618,370 - -0.8
3,618,371 + +1.4
3,618,371 - -0.9
3,618,372 - +0.3
3,618,372 - -0.5
3,618,615 - -0.1

Or see this region's nucleotide sequence