Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15405 and RR42_RS15410 are separated by 282 nucleotides RR42_RS15410 and RR42_RS15415 are separated by 170 nucleotides RR42_RS15415 and RR42_RS15420 overlap by 4 nucleotides
RR42_RS15405: RR42_RS15405 - peroxidase, at 3,330,933 to 3,331,571
_RS15405
RR42_RS15410: RR42_RS15410 - membrane protein, at 3,331,854 to 3,332,129
_RS15410
RR42_RS15415: RR42_RS15415 - membrane protein, at 3,332,300 to 3,332,680
_RS15415
RR42_RS15420: RR42_RS15420 - hypothetical protein, at 3,332,677 to 3,333,183
_RS15420
Position (kb)
3331
3332
3333 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3330.882 kb on + strand at 3330.883 kb on - strand at 3330.883 kb on - strand at 3330.934 kb on + strand at 3330.934 kb on + strand at 3330.934 kb on + strand at 3330.934 kb on + strand at 3330.935 kb on - strand at 3330.935 kb on - strand at 3330.935 kb on - strand at 3330.935 kb on - strand at 3330.982 kb on + strand at 3330.982 kb on + strand at 3330.982 kb on + strand at 3331.005 kb on + strand, within RR42_RS15405 at 3331.006 kb on - strand, within RR42_RS15405 at 3331.006 kb on - strand, within RR42_RS15405 at 3331.006 kb on - strand, within RR42_RS15405 at 3331.082 kb on + strand, within RR42_RS15405 at 3331.082 kb on + strand, within RR42_RS15405 at 3331.083 kb on - strand, within RR42_RS15405 at 3331.177 kb on + strand, within RR42_RS15405 at 3331.249 kb on + strand, within RR42_RS15405 at 3331.250 kb on - strand, within RR42_RS15405 at 3331.250 kb on - strand, within RR42_RS15405 at 3331.250 kb on - strand, within RR42_RS15405 at 3331.323 kb on - strand, within RR42_RS15405 at 3331.563 kb on + strand at 3331.563 kb on + strand at 3331.564 kb on - strand at 3331.564 kb on - strand at 3331.596 kb on - strand at 3331.596 kb on - strand at 3331.611 kb on + strand at 3331.612 kb on - strand at 3331.640 kb on + strand at 3331.642 kb on + strand at 3331.651 kb on + strand at 3331.669 kb on + strand at 3331.669 kb on + strand at 3331.672 kb on + strand at 3331.760 kb on + strand at 3331.765 kb on + strand at 3331.766 kb on - strand at 3331.768 kb on + strand at 3331.768 kb on + strand at 3331.898 kb on + strand, within RR42_RS15410 at 3332.046 kb on + strand, within RR42_RS15410 at 3332.046 kb on + strand, within RR42_RS15410 at 3332.047 kb on - strand, within RR42_RS15410 at 3332.111 kb on - strand at 3332.111 kb on - strand at 3332.127 kb on + strand at 3332.329 kb on + strand at 3332.330 kb on - strand at 3332.561 kb on + strand, within RR42_RS15415 at 3332.562 kb on - strand, within RR42_RS15415 at 3332.562 kb on - strand, within RR42_RS15415 at 3332.846 kb on - strand, within RR42_RS15420 at 3332.846 kb on - strand, within RR42_RS15420 at 3333.091 kb on + strand, within RR42_RS15420 at 3333.092 kb on - strand, within RR42_RS15420
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,330,882 + -0.0 3,330,883 - -1.4 3,330,883 - -2.6 3,330,934 + -0.4 3,330,934 + -0.6 3,330,934 + +1.9 3,330,934 + -0.7 3,330,935 - +0.9 3,330,935 - -0.5 3,330,935 - -0.4 3,330,935 - -1.1 3,330,982 + -1.1 3,330,982 + +1.1 3,330,982 + -0.0 3,331,005 + RR42_RS15405 0.11 +0.2 3,331,006 - RR42_RS15405 0.11 -0.7 3,331,006 - RR42_RS15405 0.11 -0.1 3,331,006 - RR42_RS15405 0.11 -0.3 3,331,082 + RR42_RS15405 0.23 +0.6 3,331,082 + RR42_RS15405 0.23 -0.7 3,331,083 - RR42_RS15405 0.23 +0.2 3,331,177 + RR42_RS15405 0.38 -0.3 3,331,249 + RR42_RS15405 0.49 +0.2 3,331,250 - RR42_RS15405 0.50 +0.0 3,331,250 - RR42_RS15405 0.50 +0.4 3,331,250 - RR42_RS15405 0.50 -0.3 3,331,323 - RR42_RS15405 0.61 +0.5 3,331,563 + -0.9 3,331,563 + +0.9 3,331,564 - -0.7 3,331,564 - -1.4 3,331,596 - -1.7 3,331,596 - -2.3 3,331,611 + +0.2 3,331,612 - -0.3 3,331,640 + +0.1 3,331,642 + +1.8 3,331,651 + +0.4 3,331,669 + -0.2 3,331,669 + +1.8 3,331,672 + +0.1 3,331,760 + +1.4 3,331,765 + -0.0 3,331,766 - -1.4 3,331,768 + -0.5 3,331,768 + +1.3 3,331,898 + RR42_RS15410 0.16 -0.8 3,332,046 + RR42_RS15410 0.70 -1.3 3,332,046 + RR42_RS15410 0.70 -0.3 3,332,047 - RR42_RS15410 0.70 -3.1 3,332,111 - -1.5 3,332,111 - -0.3 3,332,127 + -0.5 3,332,329 + -1.3 3,332,330 - -0.6 3,332,561 + RR42_RS15415 0.69 -3.2 3,332,562 - RR42_RS15415 0.69 -1.0 3,332,562 - RR42_RS15415 0.69 -2.2 3,332,846 - RR42_RS15420 0.33 -0.8 3,332,846 - RR42_RS15420 0.33 -1.5 3,333,091 + RR42_RS15420 0.82 +1.1 3,333,092 - RR42_RS15420 0.82 -0.4
Or see this region's nucleotide sequence