Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15085 and RR42_RS15090 are separated by 16 nucleotides RR42_RS15090 and RR42_RS15095 are separated by 323 nucleotides
RR42_RS15085: RR42_RS15085 - LacI family transcriptional regulator, at 3,262,654 to 3,263,631
_RS15085
RR42_RS15090: RR42_RS15090 - DNA helicase, at 3,263,648 to 3,266,011
_RS15090
RR42_RS15095: RR42_RS15095 - valyl-tRNA synthetase, at 3,266,335 to 3,269,202
_RS15095
Position (kb)
3263
3264
3265
3266
3267 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3262.764 kb on - strand, within RR42_RS15085 at 3262.772 kb on - strand, within RR42_RS15085 at 3262.923 kb on + strand, within RR42_RS15085 at 3262.923 kb on + strand, within RR42_RS15085 at 3262.924 kb on - strand, within RR42_RS15085 at 3262.924 kb on - strand, within RR42_RS15085 at 3262.969 kb on + strand, within RR42_RS15085 at 3262.969 kb on + strand, within RR42_RS15085 at 3262.969 kb on + strand, within RR42_RS15085 at 3262.970 kb on + strand, within RR42_RS15085 at 3263.029 kb on + strand, within RR42_RS15085 at 3263.030 kb on - strand, within RR42_RS15085 at 3263.122 kb on + strand, within RR42_RS15085 at 3263.123 kb on - strand, within RR42_RS15085 at 3263.123 kb on - strand, within RR42_RS15085 at 3263.209 kb on + strand, within RR42_RS15085 at 3263.209 kb on + strand, within RR42_RS15085 at 3263.209 kb on + strand, within RR42_RS15085 at 3263.209 kb on + strand, within RR42_RS15085 at 3263.210 kb on - strand, within RR42_RS15085 at 3263.395 kb on + strand, within RR42_RS15085 at 3263.396 kb on - strand, within RR42_RS15085 at 3263.396 kb on - strand, within RR42_RS15085 at 3263.396 kb on - strand, within RR42_RS15085 at 3263.404 kb on + strand, within RR42_RS15085 at 3263.839 kb on - strand at 3264.120 kb on + strand, within RR42_RS15090 at 3264.579 kb on + strand, within RR42_RS15090 at 3264.949 kb on - strand, within RR42_RS15090 at 3265.162 kb on - strand, within RR42_RS15090 at 3265.249 kb on - strand, within RR42_RS15090 at 3265.431 kb on + strand, within RR42_RS15090 at 3265.491 kb on + strand, within RR42_RS15090 at 3265.588 kb on - strand, within RR42_RS15090 at 3265.608 kb on + strand, within RR42_RS15090 at 3266.040 kb on + strand at 3266.041 kb on - strand at 3266.041 kb on - strand at 3266.162 kb on + strand at 3266.163 kb on - strand at 3266.163 kb on - strand at 3266.257 kb on + strand at 3266.258 kb on - strand at 3266.316 kb on + strand at 3266.316 kb on + strand at 3266.316 kb on + strand at 3266.316 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,262,764 - RR42_RS15085 0.11 -0.9 3,262,772 - RR42_RS15085 0.12 -1.4 3,262,923 + RR42_RS15085 0.28 -2.9 3,262,923 + RR42_RS15085 0.28 -1.3 3,262,924 - RR42_RS15085 0.28 -1.4 3,262,924 - RR42_RS15085 0.28 -1.0 3,262,969 + RR42_RS15085 0.32 -1.8 3,262,969 + RR42_RS15085 0.32 -0.4 3,262,969 + RR42_RS15085 0.32 -0.5 3,262,970 + RR42_RS15085 0.32 +0.2 3,263,029 + RR42_RS15085 0.38 -1.0 3,263,030 - RR42_RS15085 0.38 +0.6 3,263,122 + RR42_RS15085 0.48 -1.2 3,263,123 - RR42_RS15085 0.48 -0.6 3,263,123 - RR42_RS15085 0.48 +0.5 3,263,209 + RR42_RS15085 0.57 -0.1 3,263,209 + RR42_RS15085 0.57 -0.2 3,263,209 + RR42_RS15085 0.57 -0.4 3,263,209 + RR42_RS15085 0.57 +0.2 3,263,210 - RR42_RS15085 0.57 -0.1 3,263,395 + RR42_RS15085 0.76 +0.6 3,263,396 - RR42_RS15085 0.76 -1.7 3,263,396 - RR42_RS15085 0.76 +1.2 3,263,396 - RR42_RS15085 0.76 +1.1 3,263,404 + RR42_RS15085 0.77 +1.0 3,263,839 - -2.2 3,264,120 + RR42_RS15090 0.20 -1.1 3,264,579 + RR42_RS15090 0.39 +0.2 3,264,949 - RR42_RS15090 0.55 -1.7 3,265,162 - RR42_RS15090 0.64 -1.9 3,265,249 - RR42_RS15090 0.68 +1.0 3,265,431 + RR42_RS15090 0.75 -0.9 3,265,491 + RR42_RS15090 0.78 -2.6 3,265,588 - RR42_RS15090 0.82 -1.2 3,265,608 + RR42_RS15090 0.83 -1.4 3,266,040 + +3.0 3,266,041 - -0.7 3,266,041 - +1.0 3,266,162 + +0.3 3,266,163 - -0.5 3,266,163 - -0.4 3,266,257 + +0.1 3,266,258 - -0.8 3,266,316 + -0.0 3,266,316 + -0.1 3,266,316 + +1.8 3,266,316 + -0.1
Or see this region's nucleotide sequence