Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15090

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15085 and RR42_RS15090 are separated by 16 nucleotidesRR42_RS15090 and RR42_RS15095 are separated by 323 nucleotides RR42_RS15085: RR42_RS15085 - LacI family transcriptional regulator, at 3,262,654 to 3,263,631 _RS15085 RR42_RS15090: RR42_RS15090 - DNA helicase, at 3,263,648 to 3,266,011 _RS15090 RR42_RS15095: RR42_RS15095 - valyl-tRNA synthetase, at 3,266,335 to 3,269,202 _RS15095 Position (kb) 3263 3264 3265 3266 3267Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3262.764 kb on - strand, within RR42_RS15085at 3262.772 kb on - strand, within RR42_RS15085at 3262.923 kb on + strand, within RR42_RS15085at 3262.923 kb on + strand, within RR42_RS15085at 3262.924 kb on - strand, within RR42_RS15085at 3262.924 kb on - strand, within RR42_RS15085at 3262.969 kb on + strand, within RR42_RS15085at 3262.969 kb on + strand, within RR42_RS15085at 3262.969 kb on + strand, within RR42_RS15085at 3262.970 kb on + strand, within RR42_RS15085at 3263.029 kb on + strand, within RR42_RS15085at 3263.030 kb on - strand, within RR42_RS15085at 3263.122 kb on + strand, within RR42_RS15085at 3263.123 kb on - strand, within RR42_RS15085at 3263.123 kb on - strand, within RR42_RS15085at 3263.209 kb on + strand, within RR42_RS15085at 3263.209 kb on + strand, within RR42_RS15085at 3263.209 kb on + strand, within RR42_RS15085at 3263.209 kb on + strand, within RR42_RS15085at 3263.210 kb on - strand, within RR42_RS15085at 3263.395 kb on + strand, within RR42_RS15085at 3263.396 kb on - strand, within RR42_RS15085at 3263.396 kb on - strand, within RR42_RS15085at 3263.396 kb on - strand, within RR42_RS15085at 3263.404 kb on + strand, within RR42_RS15085at 3263.839 kb on - strandat 3264.120 kb on + strand, within RR42_RS15090at 3264.579 kb on + strand, within RR42_RS15090at 3264.949 kb on - strand, within RR42_RS15090at 3265.162 kb on - strand, within RR42_RS15090at 3265.249 kb on - strand, within RR42_RS15090at 3265.431 kb on + strand, within RR42_RS15090at 3265.491 kb on + strand, within RR42_RS15090at 3265.588 kb on - strand, within RR42_RS15090at 3265.608 kb on + strand, within RR42_RS15090at 3266.040 kb on + strandat 3266.041 kb on - strandat 3266.041 kb on - strandat 3266.162 kb on + strandat 3266.163 kb on - strandat 3266.163 kb on - strandat 3266.257 kb on + strandat 3266.258 kb on - strandat 3266.316 kb on + strandat 3266.316 kb on + strandat 3266.316 kb on + strandat 3266.316 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,262,764 - RR42_RS15085 0.11 -0.9
3,262,772 - RR42_RS15085 0.12 -1.4
3,262,923 + RR42_RS15085 0.28 -2.9
3,262,923 + RR42_RS15085 0.28 -1.3
3,262,924 - RR42_RS15085 0.28 -1.4
3,262,924 - RR42_RS15085 0.28 -1.0
3,262,969 + RR42_RS15085 0.32 -1.8
3,262,969 + RR42_RS15085 0.32 -0.4
3,262,969 + RR42_RS15085 0.32 -0.5
3,262,970 + RR42_RS15085 0.32 +0.2
3,263,029 + RR42_RS15085 0.38 -1.0
3,263,030 - RR42_RS15085 0.38 +0.6
3,263,122 + RR42_RS15085 0.48 -1.2
3,263,123 - RR42_RS15085 0.48 -0.6
3,263,123 - RR42_RS15085 0.48 +0.5
3,263,209 + RR42_RS15085 0.57 -0.1
3,263,209 + RR42_RS15085 0.57 -0.2
3,263,209 + RR42_RS15085 0.57 -0.4
3,263,209 + RR42_RS15085 0.57 +0.2
3,263,210 - RR42_RS15085 0.57 -0.1
3,263,395 + RR42_RS15085 0.76 +0.6
3,263,396 - RR42_RS15085 0.76 -1.7
3,263,396 - RR42_RS15085 0.76 +1.2
3,263,396 - RR42_RS15085 0.76 +1.1
3,263,404 + RR42_RS15085 0.77 +1.0
3,263,839 - -2.2
3,264,120 + RR42_RS15090 0.20 -1.1
3,264,579 + RR42_RS15090 0.39 +0.2
3,264,949 - RR42_RS15090 0.55 -1.7
3,265,162 - RR42_RS15090 0.64 -1.9
3,265,249 - RR42_RS15090 0.68 +1.0
3,265,431 + RR42_RS15090 0.75 -0.9
3,265,491 + RR42_RS15090 0.78 -2.6
3,265,588 - RR42_RS15090 0.82 -1.2
3,265,608 + RR42_RS15090 0.83 -1.4
3,266,040 + +3.0
3,266,041 - -0.7
3,266,041 - +1.0
3,266,162 + +0.3
3,266,163 - -0.5
3,266,163 - -0.4
3,266,257 + +0.1
3,266,258 - -0.8
3,266,316 + -0.0
3,266,316 + -0.1
3,266,316 + +1.8
3,266,316 + -0.1

Or see this region's nucleotide sequence