Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15050

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15045 and RR42_RS15050 are separated by 199 nucleotidesRR42_RS15050 and RR42_RS15055 are separated by 223 nucleotides RR42_RS15045: RR42_RS15045 - pyridine nucleotide-disulfide oxidoreductase, at 3,252,949 to 3,254,277 _RS15045 RR42_RS15050: RR42_RS15050 - DNA polymerase I, at 3,254,477 to 3,257,290 _RS15050 RR42_RS15055: RR42_RS15055 - hypothetical protein, at 3,257,514 to 3,258,233 _RS15055 Position (kb) 3254 3255 3256 3257 3258Strain fitness (log2 ratio) -2 -1 0 1 2at 3253.662 kb on - strand, within RR42_RS15045at 3253.686 kb on + strand, within RR42_RS15045at 3253.687 kb on - strand, within RR42_RS15045at 3253.687 kb on - strand, within RR42_RS15045at 3253.687 kb on - strand, within RR42_RS15045at 3254.069 kb on + strand, within RR42_RS15045at 3254.070 kb on - strand, within RR42_RS15045at 3254.070 kb on - strand, within RR42_RS15045at 3254.070 kb on - strand, within RR42_RS15045at 3254.070 kb on - strand, within RR42_RS15045at 3254.136 kb on + strand, within RR42_RS15045at 3254.136 kb on + strand, within RR42_RS15045at 3254.137 kb on - strand, within RR42_RS15045at 3254.137 kb on - strand, within RR42_RS15045at 3254.137 kb on - strand, within RR42_RS15045at 3254.137 kb on - strand, within RR42_RS15045at 3254.161 kb on + strandat 3254.243 kb on - strandat 3254.243 kb on - strandat 3254.243 kb on - strandat 3254.283 kb on - strandat 3254.478 kb on + strandat 3254.478 kb on + strandat 3254.479 kb on - strandat 3254.905 kb on - strand, within RR42_RS15050at 3254.905 kb on - strand, within RR42_RS15050at 3254.968 kb on - strand, within RR42_RS15050at 3254.997 kb on + strand, within RR42_RS15050at 3255.116 kb on - strand, within RR42_RS15050at 3255.346 kb on - strand, within RR42_RS15050at 3255.346 kb on - strand, within RR42_RS15050at 3255.688 kb on - strand, within RR42_RS15050at 3255.694 kb on - strand, within RR42_RS15050at 3255.694 kb on - strand, within RR42_RS15050at 3255.727 kb on - strand, within RR42_RS15050at 3255.921 kb on + strand, within RR42_RS15050at 3255.922 kb on - strand, within RR42_RS15050at 3255.993 kb on + strand, within RR42_RS15050at 3255.993 kb on + strand, within RR42_RS15050at 3256.084 kb on - strand, within RR42_RS15050at 3256.131 kb on + strand, within RR42_RS15050at 3256.131 kb on + strand, within RR42_RS15050at 3256.132 kb on - strand, within RR42_RS15050at 3256.132 kb on - strand, within RR42_RS15050at 3257.125 kb on - strandat 3257.370 kb on - strandat 3257.474 kb on + strandat 3257.474 kb on + strandat 3257.474 kb on + strandat 3257.597 kb on + strand, within RR42_RS15055at 3257.597 kb on + strand, within RR42_RS15055at 3257.598 kb on - strand, within RR42_RS15055at 3257.658 kb on + strand, within RR42_RS15055at 3257.659 kb on - strand, within RR42_RS15055at 3257.694 kb on + strand, within RR42_RS15055at 3257.694 kb on + strand, within RR42_RS15055at 3257.695 kb on - strand, within RR42_RS15055at 3257.695 kb on - strand, within RR42_RS15055at 3257.695 kb on - strand, within RR42_RS15055at 3258.165 kb on + strandat 3258.165 kb on + strandat 3258.165 kb on + strandat 3258.165 kb on + strandat 3258.171 kb on + strandat 3258.174 kb on + strandat 3258.174 kb on + strandat 3258.174 kb on + strandat 3258.175 kb on - strandat 3258.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,253,662 - RR42_RS15045 0.54 +0.8
3,253,686 + RR42_RS15045 0.55 -0.8
3,253,687 - RR42_RS15045 0.56 +0.5
3,253,687 - RR42_RS15045 0.56 -1.9
3,253,687 - RR42_RS15045 0.56 +1.8
3,254,069 + RR42_RS15045 0.84 -0.4
3,254,070 - RR42_RS15045 0.84 -0.2
3,254,070 - RR42_RS15045 0.84 -1.1
3,254,070 - RR42_RS15045 0.84 -0.3
3,254,070 - RR42_RS15045 0.84 +0.1
3,254,136 + RR42_RS15045 0.89 -0.4
3,254,136 + RR42_RS15045 0.89 +0.0
3,254,137 - RR42_RS15045 0.89 +0.4
3,254,137 - RR42_RS15045 0.89 -0.2
3,254,137 - RR42_RS15045 0.89 +0.0
3,254,137 - RR42_RS15045 0.89 -0.3
3,254,161 + -0.9
3,254,243 - +0.8
3,254,243 - -0.3
3,254,243 - +0.2
3,254,283 - +0.2
3,254,478 + -0.6
3,254,478 + -0.6
3,254,479 - -1.0
3,254,905 - RR42_RS15050 0.15 -1.5
3,254,905 - RR42_RS15050 0.15 -1.2
3,254,968 - RR42_RS15050 0.17 -1.0
3,254,997 + RR42_RS15050 0.18 -1.7
3,255,116 - RR42_RS15050 0.23 -2.1
3,255,346 - RR42_RS15050 0.31 -1.0
3,255,346 - RR42_RS15050 0.31 -1.8
3,255,688 - RR42_RS15050 0.43 -0.8
3,255,694 - RR42_RS15050 0.43 -0.6
3,255,694 - RR42_RS15050 0.43 -2.0
3,255,727 - RR42_RS15050 0.44 -1.1
3,255,921 + RR42_RS15050 0.51 -1.1
3,255,922 - RR42_RS15050 0.51 -0.8
3,255,993 + RR42_RS15050 0.54 +0.2
3,255,993 + RR42_RS15050 0.54 -1.0
3,256,084 - RR42_RS15050 0.57 -1.3
3,256,131 + RR42_RS15050 0.59 -1.1
3,256,131 + RR42_RS15050 0.59 -0.7
3,256,132 - RR42_RS15050 0.59 -1.4
3,256,132 - RR42_RS15050 0.59 -1.3
3,257,125 - -0.6
3,257,370 - -2.5
3,257,474 + -1.6
3,257,474 + -2.5
3,257,474 + -0.6
3,257,597 + RR42_RS15055 0.12 -0.1
3,257,597 + RR42_RS15055 0.12 -0.6
3,257,598 - RR42_RS15055 0.12 -0.6
3,257,658 + RR42_RS15055 0.20 -1.9
3,257,659 - RR42_RS15055 0.20 +0.3
3,257,694 + RR42_RS15055 0.25 -1.3
3,257,694 + RR42_RS15055 0.25 -1.6
3,257,695 - RR42_RS15055 0.25 +0.3
3,257,695 - RR42_RS15055 0.25 -1.0
3,257,695 - RR42_RS15055 0.25 -1.4
3,258,165 + -1.5
3,258,165 + -0.3
3,258,165 + +0.3
3,258,165 + -0.2
3,258,171 + -0.1
3,258,174 + -0.7
3,258,174 + -1.0
3,258,174 + -0.7
3,258,175 - +0.6
3,258,226 - -0.4

Or see this region's nucleotide sequence