Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15045 and RR42_RS15050 are separated by 199 nucleotides RR42_RS15050 and RR42_RS15055 are separated by 223 nucleotides
RR42_RS15045: RR42_RS15045 - pyridine nucleotide-disulfide oxidoreductase, at 3,252,949 to 3,254,277
_RS15045
RR42_RS15050: RR42_RS15050 - DNA polymerase I, at 3,254,477 to 3,257,290
_RS15050
RR42_RS15055: RR42_RS15055 - hypothetical protein, at 3,257,514 to 3,258,233
_RS15055
Position (kb)
3254
3255
3256
3257
3258 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3253.662 kb on - strand, within RR42_RS15045 at 3253.686 kb on + strand, within RR42_RS15045 at 3253.687 kb on - strand, within RR42_RS15045 at 3253.687 kb on - strand, within RR42_RS15045 at 3253.687 kb on - strand, within RR42_RS15045 at 3254.069 kb on + strand, within RR42_RS15045 at 3254.070 kb on - strand, within RR42_RS15045 at 3254.070 kb on - strand, within RR42_RS15045 at 3254.070 kb on - strand, within RR42_RS15045 at 3254.070 kb on - strand, within RR42_RS15045 at 3254.136 kb on + strand, within RR42_RS15045 at 3254.136 kb on + strand, within RR42_RS15045 at 3254.137 kb on - strand, within RR42_RS15045 at 3254.137 kb on - strand, within RR42_RS15045 at 3254.137 kb on - strand, within RR42_RS15045 at 3254.137 kb on - strand, within RR42_RS15045 at 3254.161 kb on + strand at 3254.243 kb on - strand at 3254.243 kb on - strand at 3254.243 kb on - strand at 3254.283 kb on - strand at 3254.478 kb on + strand at 3254.478 kb on + strand at 3254.479 kb on - strand at 3254.905 kb on - strand, within RR42_RS15050 at 3254.905 kb on - strand, within RR42_RS15050 at 3254.968 kb on - strand, within RR42_RS15050 at 3254.997 kb on + strand, within RR42_RS15050 at 3255.116 kb on - strand, within RR42_RS15050 at 3255.346 kb on - strand, within RR42_RS15050 at 3255.346 kb on - strand, within RR42_RS15050 at 3255.688 kb on - strand, within RR42_RS15050 at 3255.694 kb on - strand, within RR42_RS15050 at 3255.694 kb on - strand, within RR42_RS15050 at 3255.727 kb on - strand, within RR42_RS15050 at 3255.921 kb on + strand, within RR42_RS15050 at 3255.922 kb on - strand, within RR42_RS15050 at 3255.993 kb on + strand, within RR42_RS15050 at 3255.993 kb on + strand, within RR42_RS15050 at 3256.084 kb on - strand, within RR42_RS15050 at 3256.131 kb on + strand, within RR42_RS15050 at 3256.131 kb on + strand, within RR42_RS15050 at 3256.132 kb on - strand, within RR42_RS15050 at 3256.132 kb on - strand, within RR42_RS15050 at 3257.125 kb on - strand at 3257.370 kb on - strand at 3257.474 kb on + strand at 3257.474 kb on + strand at 3257.474 kb on + strand at 3257.597 kb on + strand, within RR42_RS15055 at 3257.597 kb on + strand, within RR42_RS15055 at 3257.598 kb on - strand, within RR42_RS15055 at 3257.658 kb on + strand, within RR42_RS15055 at 3257.659 kb on - strand, within RR42_RS15055 at 3257.694 kb on + strand, within RR42_RS15055 at 3257.694 kb on + strand, within RR42_RS15055 at 3257.695 kb on - strand, within RR42_RS15055 at 3257.695 kb on - strand, within RR42_RS15055 at 3257.695 kb on - strand, within RR42_RS15055 at 3258.165 kb on + strand at 3258.165 kb on + strand at 3258.165 kb on + strand at 3258.165 kb on + strand at 3258.171 kb on + strand at 3258.174 kb on + strand at 3258.174 kb on + strand at 3258.174 kb on + strand at 3258.175 kb on - strand at 3258.226 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,253,662 - RR42_RS15045 0.54 +0.8 3,253,686 + RR42_RS15045 0.55 -0.8 3,253,687 - RR42_RS15045 0.56 +0.5 3,253,687 - RR42_RS15045 0.56 -1.9 3,253,687 - RR42_RS15045 0.56 +1.8 3,254,069 + RR42_RS15045 0.84 -0.4 3,254,070 - RR42_RS15045 0.84 -0.2 3,254,070 - RR42_RS15045 0.84 -1.1 3,254,070 - RR42_RS15045 0.84 -0.3 3,254,070 - RR42_RS15045 0.84 +0.1 3,254,136 + RR42_RS15045 0.89 -0.4 3,254,136 + RR42_RS15045 0.89 +0.0 3,254,137 - RR42_RS15045 0.89 +0.4 3,254,137 - RR42_RS15045 0.89 -0.2 3,254,137 - RR42_RS15045 0.89 +0.0 3,254,137 - RR42_RS15045 0.89 -0.3 3,254,161 + -0.9 3,254,243 - +0.8 3,254,243 - -0.3 3,254,243 - +0.2 3,254,283 - +0.2 3,254,478 + -0.6 3,254,478 + -0.6 3,254,479 - -1.0 3,254,905 - RR42_RS15050 0.15 -1.5 3,254,905 - RR42_RS15050 0.15 -1.2 3,254,968 - RR42_RS15050 0.17 -1.0 3,254,997 + RR42_RS15050 0.18 -1.7 3,255,116 - RR42_RS15050 0.23 -2.1 3,255,346 - RR42_RS15050 0.31 -1.0 3,255,346 - RR42_RS15050 0.31 -1.8 3,255,688 - RR42_RS15050 0.43 -0.8 3,255,694 - RR42_RS15050 0.43 -0.6 3,255,694 - RR42_RS15050 0.43 -2.0 3,255,727 - RR42_RS15050 0.44 -1.1 3,255,921 + RR42_RS15050 0.51 -1.1 3,255,922 - RR42_RS15050 0.51 -0.8 3,255,993 + RR42_RS15050 0.54 +0.2 3,255,993 + RR42_RS15050 0.54 -1.0 3,256,084 - RR42_RS15050 0.57 -1.3 3,256,131 + RR42_RS15050 0.59 -1.1 3,256,131 + RR42_RS15050 0.59 -0.7 3,256,132 - RR42_RS15050 0.59 -1.4 3,256,132 - RR42_RS15050 0.59 -1.3 3,257,125 - -0.6 3,257,370 - -2.5 3,257,474 + -1.6 3,257,474 + -2.5 3,257,474 + -0.6 3,257,597 + RR42_RS15055 0.12 -0.1 3,257,597 + RR42_RS15055 0.12 -0.6 3,257,598 - RR42_RS15055 0.12 -0.6 3,257,658 + RR42_RS15055 0.20 -1.9 3,257,659 - RR42_RS15055 0.20 +0.3 3,257,694 + RR42_RS15055 0.25 -1.3 3,257,694 + RR42_RS15055 0.25 -1.6 3,257,695 - RR42_RS15055 0.25 +0.3 3,257,695 - RR42_RS15055 0.25 -1.0 3,257,695 - RR42_RS15055 0.25 -1.4 3,258,165 + -1.5 3,258,165 + -0.3 3,258,165 + +0.3 3,258,165 + -0.2 3,258,171 + -0.1 3,258,174 + -0.7 3,258,174 + -1.0 3,258,174 + -0.7 3,258,175 - +0.6 3,258,226 - -0.4
Or see this region's nucleotide sequence