Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14350 and RR42_RS14355 are separated by 2 nucleotides RR42_RS14355 and RR42_RS14360 overlap by 1 nucleotides RR42_RS14360 and RR42_RS14365 are separated by 127 nucleotides RR42_RS14365 and RR42_RS14370 overlap by 17 nucleotides
RR42_RS14350: RR42_RS14350 - tryptophan synthase alpha chain, at 3,085,216 to 3,086,013
_RS14350
RR42_RS14355: RR42_RS14355 - DNA methylase N-4, at 3,086,016 to 3,086,924
_RS14355
RR42_RS14360: RR42_RS14360 - tryptophan synthase subunit alpha, at 3,086,924 to 3,088,117
_RS14360
RR42_RS14365: RR42_RS14365 - N-(5'-phosphoribosyl)anthranilate isomerase, at 3,088,245 to 3,088,946
_RS14365
RR42_RS14370: RR42_RS14370 - tRNA pseudouridine synthase A, at 3,088,930 to 3,089,754
_RS14370
Position (kb)
3086
3087
3088
3089 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3086.292 kb on - strand, within RR42_RS14355 at 3086.377 kb on + strand, within RR42_RS14355 at 3086.378 kb on - strand, within RR42_RS14355 at 3086.477 kb on - strand, within RR42_RS14355 at 3086.480 kb on - strand, within RR42_RS14355 at 3086.527 kb on + strand, within RR42_RS14355 at 3086.528 kb on - strand, within RR42_RS14355 at 3086.630 kb on - strand, within RR42_RS14355 at 3086.630 kb on - strand, within RR42_RS14355 at 3086.650 kb on + strand, within RR42_RS14355 at 3086.650 kb on + strand, within RR42_RS14355 at 3086.651 kb on - strand, within RR42_RS14355 at 3086.753 kb on - strand, within RR42_RS14355 at 3086.846 kb on - strand at 3086.957 kb on - strand at 3086.957 kb on - strand at 3086.957 kb on - strand at 3086.962 kb on + strand at 3087.040 kb on - strand at 3087.139 kb on - strand, within RR42_RS14360 at 3087.711 kb on + strand, within RR42_RS14360 at 3088.017 kb on + strand at 3088.077 kb on + strand at 3088.335 kb on + strand, within RR42_RS14365 at 3088.335 kb on + strand, within RR42_RS14365 at 3088.710 kb on - strand at 3088.819 kb on + strand, within RR42_RS14365
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,086,292 - RR42_RS14355 0.30 -0.5 3,086,377 + RR42_RS14355 0.40 -2.6 3,086,378 - RR42_RS14355 0.40 -1.9 3,086,477 - RR42_RS14355 0.51 -0.4 3,086,480 - RR42_RS14355 0.51 -0.2 3,086,527 + RR42_RS14355 0.56 -1.7 3,086,528 - RR42_RS14355 0.56 -0.8 3,086,630 - RR42_RS14355 0.68 -1.0 3,086,630 - RR42_RS14355 0.68 -1.4 3,086,650 + RR42_RS14355 0.70 -1.5 3,086,650 + RR42_RS14355 0.70 -1.9 3,086,651 - RR42_RS14355 0.70 -0.7 3,086,753 - RR42_RS14355 0.81 -0.4 3,086,846 - -0.5 3,086,957 - -2.5 3,086,957 - -1.6 3,086,957 - -0.6 3,086,962 + -2.2 3,087,040 - -1.3 3,087,139 - RR42_RS14360 0.18 -3.7 3,087,711 + RR42_RS14360 0.66 -0.9 3,088,017 + -1.3 3,088,077 + -3.7 3,088,335 + RR42_RS14365 0.13 -3.0 3,088,335 + RR42_RS14365 0.13 -2.8 3,088,710 - -0.5 3,088,819 + RR42_RS14365 0.82 -5.1
Or see this region's nucleotide sequence