Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14360

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14350 and RR42_RS14355 are separated by 2 nucleotidesRR42_RS14355 and RR42_RS14360 overlap by 1 nucleotidesRR42_RS14360 and RR42_RS14365 are separated by 127 nucleotidesRR42_RS14365 and RR42_RS14370 overlap by 17 nucleotides RR42_RS14350: RR42_RS14350 - tryptophan synthase alpha chain, at 3,085,216 to 3,086,013 _RS14350 RR42_RS14355: RR42_RS14355 - DNA methylase N-4, at 3,086,016 to 3,086,924 _RS14355 RR42_RS14360: RR42_RS14360 - tryptophan synthase subunit alpha, at 3,086,924 to 3,088,117 _RS14360 RR42_RS14365: RR42_RS14365 - N-(5'-phosphoribosyl)anthranilate isomerase, at 3,088,245 to 3,088,946 _RS14365 RR42_RS14370: RR42_RS14370 - tRNA pseudouridine synthase A, at 3,088,930 to 3,089,754 _RS14370 Position (kb) 3086 3087 3088 3089Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3086.292 kb on - strand, within RR42_RS14355at 3086.377 kb on + strand, within RR42_RS14355at 3086.378 kb on - strand, within RR42_RS14355at 3086.477 kb on - strand, within RR42_RS14355at 3086.480 kb on - strand, within RR42_RS14355at 3086.527 kb on + strand, within RR42_RS14355at 3086.528 kb on - strand, within RR42_RS14355at 3086.630 kb on - strand, within RR42_RS14355at 3086.630 kb on - strand, within RR42_RS14355at 3086.650 kb on + strand, within RR42_RS14355at 3086.650 kb on + strand, within RR42_RS14355at 3086.651 kb on - strand, within RR42_RS14355at 3086.753 kb on - strand, within RR42_RS14355at 3086.846 kb on - strandat 3086.957 kb on - strandat 3086.957 kb on - strandat 3086.957 kb on - strandat 3086.962 kb on + strandat 3087.040 kb on - strandat 3087.139 kb on - strand, within RR42_RS14360at 3087.711 kb on + strand, within RR42_RS14360at 3088.017 kb on + strandat 3088.077 kb on + strandat 3088.335 kb on + strand, within RR42_RS14365at 3088.335 kb on + strand, within RR42_RS14365at 3088.710 kb on - strandat 3088.819 kb on + strand, within RR42_RS14365

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,086,292 - RR42_RS14355 0.30 -0.5
3,086,377 + RR42_RS14355 0.40 -2.6
3,086,378 - RR42_RS14355 0.40 -1.9
3,086,477 - RR42_RS14355 0.51 -0.4
3,086,480 - RR42_RS14355 0.51 -0.2
3,086,527 + RR42_RS14355 0.56 -1.7
3,086,528 - RR42_RS14355 0.56 -0.8
3,086,630 - RR42_RS14355 0.68 -1.0
3,086,630 - RR42_RS14355 0.68 -1.4
3,086,650 + RR42_RS14355 0.70 -1.5
3,086,650 + RR42_RS14355 0.70 -1.9
3,086,651 - RR42_RS14355 0.70 -0.7
3,086,753 - RR42_RS14355 0.81 -0.4
3,086,846 - -0.5
3,086,957 - -2.5
3,086,957 - -1.6
3,086,957 - -0.6
3,086,962 + -2.2
3,087,040 - -1.3
3,087,139 - RR42_RS14360 0.18 -3.7
3,087,711 + RR42_RS14360 0.66 -0.9
3,088,017 + -1.3
3,088,077 + -3.7
3,088,335 + RR42_RS14365 0.13 -3.0
3,088,335 + RR42_RS14365 0.13 -2.8
3,088,710 - -0.5
3,088,819 + RR42_RS14365 0.82 -5.1

Or see this region's nucleotide sequence