Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14320

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14310 and RR42_RS14315 are separated by 186 nucleotidesRR42_RS14315 and RR42_RS14320 are separated by 29 nucleotidesRR42_RS14320 and RR42_RS14325 are separated by 424 nucleotides RR42_RS14310: RR42_RS14310 - MacB family efflux pump subunit, at 3,074,738 to 3,076,783 _RS14310 RR42_RS14315: RR42_RS14315 - hypothetical protein, at 3,076,970 to 3,077,200 _RS14315 RR42_RS14320: RR42_RS14320 - O-succinylhomoserine sulfhydrylase, at 3,077,230 to 3,078,435 _RS14320 RR42_RS14325: RR42_RS14325 - amidophosphoribosyltransferase, at 3,078,860 to 3,080,395 _RS14325 Position (kb) 3077 3078 3079Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3076.250 kb on + strand, within RR42_RS14310at 3076.250 kb on + strand, within RR42_RS14310at 3076.251 kb on - strand, within RR42_RS14310at 3076.251 kb on - strand, within RR42_RS14310at 3076.386 kb on + strand, within RR42_RS14310at 3076.387 kb on - strand, within RR42_RS14310at 3076.485 kb on + strand, within RR42_RS14310at 3076.486 kb on - strand, within RR42_RS14310at 3076.724 kb on + strandat 3076.724 kb on + strandat 3076.725 kb on - strandat 3076.781 kb on + strandat 3076.809 kb on + strandat 3076.809 kb on + strandat 3076.809 kb on + strandat 3076.809 kb on + strandat 3076.809 kb on + strandat 3076.810 kb on - strandat 3076.810 kb on - strandat 3076.810 kb on - strandat 3076.810 kb on - strandat 3076.842 kb on + strandat 3076.842 kb on + strandat 3076.843 kb on - strandat 3076.922 kb on + strandat 3076.922 kb on + strandat 3076.922 kb on + strandat 3076.922 kb on + strandat 3076.923 kb on - strandat 3076.923 kb on - strandat 3076.923 kb on - strandat 3076.923 kb on - strandat 3076.923 kb on - strandat 3076.927 kb on - strandat 3076.927 kb on - strandat 3076.927 kb on - strandat 3077.071 kb on + strand, within RR42_RS14315at 3077.133 kb on - strand, within RR42_RS14315at 3077.133 kb on - strand, within RR42_RS14315at 3077.133 kb on - strand, within RR42_RS14315at 3077.133 kb on - strand, within RR42_RS14315at 3077.133 kb on - strand, within RR42_RS14315at 3077.133 kb on - strand, within RR42_RS14315at 3077.367 kb on - strand, within RR42_RS14320at 3077.367 kb on - strand, within RR42_RS14320at 3077.567 kb on + strand, within RR42_RS14320at 3077.568 kb on - strand, within RR42_RS14320at 3077.568 kb on - strand, within RR42_RS14320at 3077.568 kb on - strand, within RR42_RS14320at 3077.874 kb on + strand, within RR42_RS14320at 3078.233 kb on - strand, within RR42_RS14320at 3078.258 kb on - strand, within RR42_RS14320at 3078.336 kb on - strandat 3078.336 kb on - strandat 3078.396 kb on + strandat 3078.396 kb on + strandat 3078.397 kb on - strandat 3078.472 kb on + strandat 3078.473 kb on - strandat 3078.473 kb on - strandat 3078.482 kb on + strandat 3078.482 kb on + strandat 3078.583 kb on - strandat 3078.660 kb on + strandat 3078.660 kb on + strandat 3078.660 kb on + strandat 3078.661 kb on - strandat 3078.861 kb on + strandat 3078.862 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,076,250 + RR42_RS14310 0.74 -2.7
3,076,250 + RR42_RS14310 0.74 +0.1
3,076,251 - RR42_RS14310 0.74 +1.1
3,076,251 - RR42_RS14310 0.74 -2.2
3,076,386 + RR42_RS14310 0.81 -0.4
3,076,387 - RR42_RS14310 0.81 -0.7
3,076,485 + RR42_RS14310 0.85 -0.7
3,076,486 - RR42_RS14310 0.85 -0.4
3,076,724 + +0.4
3,076,724 + +0.7
3,076,725 - -0.0
3,076,781 + -0.8
3,076,809 + -0.4
3,076,809 + -1.7
3,076,809 + +0.9
3,076,809 + -0.3
3,076,809 + -0.4
3,076,810 - -0.7
3,076,810 - +0.7
3,076,810 - -0.9
3,076,810 - +1.0
3,076,842 + -1.4
3,076,842 + +0.3
3,076,843 - +0.2
3,076,922 + -0.1
3,076,922 + -0.0
3,076,922 + -0.6
3,076,922 + -0.6
3,076,923 - +0.0
3,076,923 - -0.9
3,076,923 - -1.5
3,076,923 - +2.1
3,076,923 - -1.1
3,076,927 - +0.0
3,076,927 - -1.7
3,076,927 - +0.6
3,077,071 + RR42_RS14315 0.44 -1.0
3,077,133 - RR42_RS14315 0.71 +3.1
3,077,133 - RR42_RS14315 0.71 +0.3
3,077,133 - RR42_RS14315 0.71 +0.5
3,077,133 - RR42_RS14315 0.71 +0.6
3,077,133 - RR42_RS14315 0.71 +0.8
3,077,133 - RR42_RS14315 0.71 -1.9
3,077,367 - RR42_RS14320 0.11 -0.5
3,077,367 - RR42_RS14320 0.11 -3.8
3,077,567 + RR42_RS14320 0.28 -1.7
3,077,568 - RR42_RS14320 0.28 -3.0
3,077,568 - RR42_RS14320 0.28 -2.4
3,077,568 - RR42_RS14320 0.28 -3.6
3,077,874 + RR42_RS14320 0.53 -2.8
3,078,233 - RR42_RS14320 0.83 -5.1
3,078,258 - RR42_RS14320 0.85 -2.9
3,078,336 - -2.6
3,078,336 - -3.0
3,078,396 + -3.7
3,078,396 + -0.5
3,078,397 - -2.0
3,078,472 + -2.0
3,078,473 - -1.5
3,078,473 - +0.3
3,078,482 + -2.9
3,078,482 + -3.3
3,078,583 - +0.3
3,078,660 + +0.1
3,078,660 + -3.3
3,078,660 + -3.6
3,078,661 - +0.5
3,078,861 + +0.0
3,078,862 - +0.4

Or see this region's nucleotide sequence