Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14310 and RR42_RS14315 are separated by 186 nucleotides RR42_RS14315 and RR42_RS14320 are separated by 29 nucleotides RR42_RS14320 and RR42_RS14325 are separated by 424 nucleotides
RR42_RS14310: RR42_RS14310 - MacB family efflux pump subunit, at 3,074,738 to 3,076,783
_RS14310
RR42_RS14315: RR42_RS14315 - hypothetical protein, at 3,076,970 to 3,077,200
_RS14315
RR42_RS14320: RR42_RS14320 - O-succinylhomoserine sulfhydrylase, at 3,077,230 to 3,078,435
_RS14320
RR42_RS14325: RR42_RS14325 - amidophosphoribosyltransferase, at 3,078,860 to 3,080,395
_RS14325
Position (kb)
3077
3078
3079 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 3076.250 kb on + strand, within RR42_RS14310 at 3076.250 kb on + strand, within RR42_RS14310 at 3076.251 kb on - strand, within RR42_RS14310 at 3076.251 kb on - strand, within RR42_RS14310 at 3076.386 kb on + strand, within RR42_RS14310 at 3076.387 kb on - strand, within RR42_RS14310 at 3076.485 kb on + strand, within RR42_RS14310 at 3076.486 kb on - strand, within RR42_RS14310 at 3076.724 kb on + strand at 3076.724 kb on + strand at 3076.725 kb on - strand at 3076.781 kb on + strand at 3076.809 kb on + strand at 3076.809 kb on + strand at 3076.809 kb on + strand at 3076.809 kb on + strand at 3076.809 kb on + strand at 3076.810 kb on - strand at 3076.810 kb on - strand at 3076.810 kb on - strand at 3076.810 kb on - strand at 3076.842 kb on + strand at 3076.842 kb on + strand at 3076.843 kb on - strand at 3076.922 kb on + strand at 3076.922 kb on + strand at 3076.922 kb on + strand at 3076.922 kb on + strand at 3076.923 kb on - strand at 3076.923 kb on - strand at 3076.923 kb on - strand at 3076.923 kb on - strand at 3076.923 kb on - strand at 3076.927 kb on - strand at 3076.927 kb on - strand at 3076.927 kb on - strand at 3077.071 kb on + strand, within RR42_RS14315 at 3077.133 kb on - strand, within RR42_RS14315 at 3077.133 kb on - strand, within RR42_RS14315 at 3077.133 kb on - strand, within RR42_RS14315 at 3077.133 kb on - strand, within RR42_RS14315 at 3077.133 kb on - strand, within RR42_RS14315 at 3077.133 kb on - strand, within RR42_RS14315 at 3077.367 kb on - strand, within RR42_RS14320 at 3077.367 kb on - strand, within RR42_RS14320 at 3077.567 kb on + strand, within RR42_RS14320 at 3077.568 kb on - strand, within RR42_RS14320 at 3077.568 kb on - strand, within RR42_RS14320 at 3077.568 kb on - strand, within RR42_RS14320 at 3077.874 kb on + strand, within RR42_RS14320 at 3078.233 kb on - strand, within RR42_RS14320 at 3078.258 kb on - strand, within RR42_RS14320 at 3078.336 kb on - strand at 3078.336 kb on - strand at 3078.396 kb on + strand at 3078.396 kb on + strand at 3078.397 kb on - strand at 3078.472 kb on + strand at 3078.473 kb on - strand at 3078.473 kb on - strand at 3078.482 kb on + strand at 3078.482 kb on + strand at 3078.583 kb on - strand at 3078.660 kb on + strand at 3078.660 kb on + strand at 3078.660 kb on + strand at 3078.661 kb on - strand at 3078.861 kb on + strand at 3078.862 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,076,250 + RR42_RS14310 0.74 -2.7 3,076,250 + RR42_RS14310 0.74 +0.1 3,076,251 - RR42_RS14310 0.74 +1.1 3,076,251 - RR42_RS14310 0.74 -2.2 3,076,386 + RR42_RS14310 0.81 -0.4 3,076,387 - RR42_RS14310 0.81 -0.7 3,076,485 + RR42_RS14310 0.85 -0.7 3,076,486 - RR42_RS14310 0.85 -0.4 3,076,724 + +0.4 3,076,724 + +0.7 3,076,725 - -0.0 3,076,781 + -0.8 3,076,809 + -0.4 3,076,809 + -1.7 3,076,809 + +0.9 3,076,809 + -0.3 3,076,809 + -0.4 3,076,810 - -0.7 3,076,810 - +0.7 3,076,810 - -0.9 3,076,810 - +1.0 3,076,842 + -1.4 3,076,842 + +0.3 3,076,843 - +0.2 3,076,922 + -0.1 3,076,922 + -0.0 3,076,922 + -0.6 3,076,922 + -0.6 3,076,923 - +0.0 3,076,923 - -0.9 3,076,923 - -1.5 3,076,923 - +2.1 3,076,923 - -1.1 3,076,927 - +0.0 3,076,927 - -1.7 3,076,927 - +0.6 3,077,071 + RR42_RS14315 0.44 -1.0 3,077,133 - RR42_RS14315 0.71 +3.1 3,077,133 - RR42_RS14315 0.71 +0.3 3,077,133 - RR42_RS14315 0.71 +0.5 3,077,133 - RR42_RS14315 0.71 +0.6 3,077,133 - RR42_RS14315 0.71 +0.8 3,077,133 - RR42_RS14315 0.71 -1.9 3,077,367 - RR42_RS14320 0.11 -0.5 3,077,367 - RR42_RS14320 0.11 -3.8 3,077,567 + RR42_RS14320 0.28 -1.7 3,077,568 - RR42_RS14320 0.28 -3.0 3,077,568 - RR42_RS14320 0.28 -2.4 3,077,568 - RR42_RS14320 0.28 -3.6 3,077,874 + RR42_RS14320 0.53 -2.8 3,078,233 - RR42_RS14320 0.83 -5.1 3,078,258 - RR42_RS14320 0.85 -2.9 3,078,336 - -2.6 3,078,336 - -3.0 3,078,396 + -3.7 3,078,396 + -0.5 3,078,397 - -2.0 3,078,472 + -2.0 3,078,473 - -1.5 3,078,473 - +0.3 3,078,482 + -2.9 3,078,482 + -3.3 3,078,583 - +0.3 3,078,660 + +0.1 3,078,660 + -3.3 3,078,660 + -3.6 3,078,661 - +0.5 3,078,861 + +0.0 3,078,862 - +0.4
Or see this region's nucleotide sequence