Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS11880 and RR42_RS11885 are separated by 67 nucleotides RR42_RS11885 and RR42_RS11890 are separated by 23 nucleotides
RR42_RS11880: RR42_RS11880 - methionine aminopeptidase, at 2,540,035 to 2,540,853
_RS11880
RR42_RS11885: RR42_RS11885 - (protein-PII) uridylyltransferase, at 2,540,921 to 2,543,506
_RS11885
RR42_RS11890: RR42_RS11890 - 16S rRNA pseudouridylate synthase, at 2,543,530 to 2,545,425
_RS11890
Position (kb)
2540
2541
2542
2543
2544 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2539.970 kb on + strand at 2539.970 kb on + strand at 2540.916 kb on + strand at 2541.754 kb on + strand, within RR42_RS11885 at 2541.754 kb on + strand, within RR42_RS11885 at 2541.792 kb on - strand, within RR42_RS11885 at 2541.823 kb on + strand, within RR42_RS11885 at 2541.824 kb on - strand, within RR42_RS11885 at 2541.824 kb on - strand, within RR42_RS11885 at 2541.841 kb on + strand, within RR42_RS11885 at 2541.944 kb on + strand, within RR42_RS11885 at 2541.945 kb on - strand, within RR42_RS11885 at 2541.945 kb on - strand, within RR42_RS11885 at 2541.986 kb on + strand, within RR42_RS11885 at 2541.986 kb on + strand, within RR42_RS11885 at 2541.987 kb on - strand, within RR42_RS11885 at 2542.041 kb on - strand, within RR42_RS11885 at 2542.041 kb on - strand, within RR42_RS11885 at 2542.235 kb on + strand, within RR42_RS11885 at 2542.595 kb on + strand, within RR42_RS11885 at 2542.596 kb on - strand, within RR42_RS11885 at 2542.596 kb on - strand, within RR42_RS11885 at 2542.610 kb on + strand, within RR42_RS11885 at 2542.692 kb on - strand, within RR42_RS11885 at 2542.892 kb on + strand, within RR42_RS11885 at 2542.892 kb on + strand, within RR42_RS11885 at 2542.893 kb on - strand, within RR42_RS11885 at 2542.893 kb on - strand, within RR42_RS11885 at 2542.970 kb on + strand, within RR42_RS11885 at 2542.970 kb on + strand, within RR42_RS11885 at 2542.971 kb on - strand, within RR42_RS11885 at 2543.073 kb on - strand, within RR42_RS11885 at 2543.083 kb on + strand, within RR42_RS11885 at 2543.133 kb on - strand, within RR42_RS11885 at 2543.291 kb on + strand at 2543.292 kb on - strand at 2543.350 kb on - strand at 2543.452 kb on + strand at 2543.466 kb on + strand at 2543.467 kb on - strand at 2543.467 kb on - strand at 2543.505 kb on - strand at 2543.522 kb on + strand at 2543.522 kb on + strand at 2543.523 kb on - strand at 2543.523 kb on - strand at 2543.523 kb on - strand at 2543.523 kb on - strand at 2543.530 kb on - strand at 2543.530 kb on - strand at 2543.530 kb on - strand at 2543.530 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 2,539,970 + +0.4 2,539,970 + -0.5 2,540,916 + -0.5 2,541,754 + RR42_RS11885 0.32 -2.4 2,541,754 + RR42_RS11885 0.32 -1.4 2,541,792 - RR42_RS11885 0.34 -4.1 2,541,823 + RR42_RS11885 0.35 -3.1 2,541,824 - RR42_RS11885 0.35 -0.3 2,541,824 - RR42_RS11885 0.35 -0.4 2,541,841 + RR42_RS11885 0.36 -1.4 2,541,944 + RR42_RS11885 0.40 -0.9 2,541,945 - RR42_RS11885 0.40 -0.8 2,541,945 - RR42_RS11885 0.40 -1.6 2,541,986 + RR42_RS11885 0.41 -2.8 2,541,986 + RR42_RS11885 0.41 -1.4 2,541,987 - RR42_RS11885 0.41 -1.4 2,542,041 - RR42_RS11885 0.43 -2.5 2,542,041 - RR42_RS11885 0.43 -2.6 2,542,235 + RR42_RS11885 0.51 -1.4 2,542,595 + RR42_RS11885 0.65 -4.3 2,542,596 - RR42_RS11885 0.65 -2.8 2,542,596 - RR42_RS11885 0.65 -0.9 2,542,610 + RR42_RS11885 0.65 -1.4 2,542,692 - RR42_RS11885 0.68 -2.6 2,542,892 + RR42_RS11885 0.76 -2.8 2,542,892 + RR42_RS11885 0.76 -3.2 2,542,893 - RR42_RS11885 0.76 -0.1 2,542,893 - RR42_RS11885 0.76 -2.1 2,542,970 + RR42_RS11885 0.79 -1.6 2,542,970 + RR42_RS11885 0.79 -2.0 2,542,971 - RR42_RS11885 0.79 -2.4 2,543,073 - RR42_RS11885 0.83 -2.4 2,543,083 + RR42_RS11885 0.84 -2.4 2,543,133 - RR42_RS11885 0.86 -3.4 2,543,291 + -2.4 2,543,292 - +0.9 2,543,350 - -1.8 2,543,452 + -1.1 2,543,466 + -1.5 2,543,467 - -1.1 2,543,467 - -1.2 2,543,505 - -1.7 2,543,522 + -2.8 2,543,522 + -0.1 2,543,523 - +0.5 2,543,523 - -2.4 2,543,523 - -0.3 2,543,523 - +0.3 2,543,530 - -1.6 2,543,530 - -1.0 2,543,530 - -0.6 2,543,530 - -0.2
Or see this region's nucleotide sequence