Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11885

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11880 and RR42_RS11885 are separated by 67 nucleotidesRR42_RS11885 and RR42_RS11890 are separated by 23 nucleotides RR42_RS11880: RR42_RS11880 - methionine aminopeptidase, at 2,540,035 to 2,540,853 _RS11880 RR42_RS11885: RR42_RS11885 - (protein-PII) uridylyltransferase, at 2,540,921 to 2,543,506 _RS11885 RR42_RS11890: RR42_RS11890 - 16S rRNA pseudouridylate synthase, at 2,543,530 to 2,545,425 _RS11890 Position (kb) 2540 2541 2542 2543 2544Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2539.970 kb on + strandat 2539.970 kb on + strandat 2540.916 kb on + strandat 2541.754 kb on + strand, within RR42_RS11885at 2541.754 kb on + strand, within RR42_RS11885at 2541.792 kb on - strand, within RR42_RS11885at 2541.823 kb on + strand, within RR42_RS11885at 2541.824 kb on - strand, within RR42_RS11885at 2541.824 kb on - strand, within RR42_RS11885at 2541.841 kb on + strand, within RR42_RS11885at 2541.944 kb on + strand, within RR42_RS11885at 2541.945 kb on - strand, within RR42_RS11885at 2541.945 kb on - strand, within RR42_RS11885at 2541.986 kb on + strand, within RR42_RS11885at 2541.986 kb on + strand, within RR42_RS11885at 2541.987 kb on - strand, within RR42_RS11885at 2542.041 kb on - strand, within RR42_RS11885at 2542.041 kb on - strand, within RR42_RS11885at 2542.235 kb on + strand, within RR42_RS11885at 2542.595 kb on + strand, within RR42_RS11885at 2542.596 kb on - strand, within RR42_RS11885at 2542.596 kb on - strand, within RR42_RS11885at 2542.610 kb on + strand, within RR42_RS11885at 2542.692 kb on - strand, within RR42_RS11885at 2542.892 kb on + strand, within RR42_RS11885at 2542.892 kb on + strand, within RR42_RS11885at 2542.893 kb on - strand, within RR42_RS11885at 2542.893 kb on - strand, within RR42_RS11885at 2542.970 kb on + strand, within RR42_RS11885at 2542.970 kb on + strand, within RR42_RS11885at 2542.971 kb on - strand, within RR42_RS11885at 2543.073 kb on - strand, within RR42_RS11885at 2543.083 kb on + strand, within RR42_RS11885at 2543.133 kb on - strand, within RR42_RS11885at 2543.291 kb on + strandat 2543.292 kb on - strandat 2543.350 kb on - strandat 2543.452 kb on + strandat 2543.466 kb on + strandat 2543.467 kb on - strandat 2543.467 kb on - strandat 2543.505 kb on - strandat 2543.522 kb on + strandat 2543.522 kb on + strandat 2543.523 kb on - strandat 2543.523 kb on - strandat 2543.523 kb on - strandat 2543.523 kb on - strandat 2543.530 kb on - strandat 2543.530 kb on - strandat 2543.530 kb on - strandat 2543.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,539,970 + +0.4
2,539,970 + -0.5
2,540,916 + -0.5
2,541,754 + RR42_RS11885 0.32 -2.4
2,541,754 + RR42_RS11885 0.32 -1.4
2,541,792 - RR42_RS11885 0.34 -4.1
2,541,823 + RR42_RS11885 0.35 -3.1
2,541,824 - RR42_RS11885 0.35 -0.3
2,541,824 - RR42_RS11885 0.35 -0.4
2,541,841 + RR42_RS11885 0.36 -1.4
2,541,944 + RR42_RS11885 0.40 -0.9
2,541,945 - RR42_RS11885 0.40 -0.8
2,541,945 - RR42_RS11885 0.40 -1.6
2,541,986 + RR42_RS11885 0.41 -2.8
2,541,986 + RR42_RS11885 0.41 -1.4
2,541,987 - RR42_RS11885 0.41 -1.4
2,542,041 - RR42_RS11885 0.43 -2.5
2,542,041 - RR42_RS11885 0.43 -2.6
2,542,235 + RR42_RS11885 0.51 -1.4
2,542,595 + RR42_RS11885 0.65 -4.3
2,542,596 - RR42_RS11885 0.65 -2.8
2,542,596 - RR42_RS11885 0.65 -0.9
2,542,610 + RR42_RS11885 0.65 -1.4
2,542,692 - RR42_RS11885 0.68 -2.6
2,542,892 + RR42_RS11885 0.76 -2.8
2,542,892 + RR42_RS11885 0.76 -3.2
2,542,893 - RR42_RS11885 0.76 -0.1
2,542,893 - RR42_RS11885 0.76 -2.1
2,542,970 + RR42_RS11885 0.79 -1.6
2,542,970 + RR42_RS11885 0.79 -2.0
2,542,971 - RR42_RS11885 0.79 -2.4
2,543,073 - RR42_RS11885 0.83 -2.4
2,543,083 + RR42_RS11885 0.84 -2.4
2,543,133 - RR42_RS11885 0.86 -3.4
2,543,291 + -2.4
2,543,292 - +0.9
2,543,350 - -1.8
2,543,452 + -1.1
2,543,466 + -1.5
2,543,467 - -1.1
2,543,467 - -1.2
2,543,505 - -1.7
2,543,522 + -2.8
2,543,522 + -0.1
2,543,523 - +0.5
2,543,523 - -2.4
2,543,523 - -0.3
2,543,523 - +0.3
2,543,530 - -1.6
2,543,530 - -1.0
2,543,530 - -0.6
2,543,530 - -0.2

Or see this region's nucleotide sequence