Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08770

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08765 and RR42_RS08770 are separated by 312 nucleotidesRR42_RS08770 and RR42_RS08775 are separated by 396 nucleotides RR42_RS08765: RR42_RS08765 - histidine kinase, at 1,835,959 to 1,837,890 _RS08765 RR42_RS08770: RR42_RS08770 - 2-nitropropane dioxygenase, at 1,838,203 to 1,839,384 _RS08770 RR42_RS08775: RR42_RS08775 - protease, at 1,839,781 to 1,840,734 _RS08775 Position (kb) 1838 1839 1840Strain fitness (log2 ratio) -1 0 1at 1837.310 kb on + strand, within RR42_RS08765at 1837.311 kb on - strand, within RR42_RS08765at 1837.311 kb on - strand, within RR42_RS08765at 1837.311 kb on - strand, within RR42_RS08765at 1837.981 kb on + strandat 1837.981 kb on + strandat 1837.981 kb on + strandat 1837.982 kb on - strandat 1837.986 kb on + strandat 1837.987 kb on - strandat 1838.133 kb on + strandat 1838.133 kb on + strandat 1838.508 kb on - strand, within RR42_RS08770at 1839.334 kb on + strandat 1839.384 kb on + strandat 1839.385 kb on - strandat 1839.396 kb on + strandat 1839.447 kb on + strandat 1839.448 kb on - strandat 1839.518 kb on - strandat 1839.518 kb on - strandat 1839.657 kb on + strandat 1839.811 kb on + strandat 1839.936 kb on + strand, within RR42_RS08775at 1839.937 kb on - strand, within RR42_RS08775at 1839.937 kb on - strand, within RR42_RS08775at 1839.937 kb on - strand, within RR42_RS08775at 1840.143 kb on - strand, within RR42_RS08775at 1840.279 kb on + strand, within RR42_RS08775

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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1,837,310 + RR42_RS08765 0.70 -0.0
1,837,311 - RR42_RS08765 0.70 +1.1
1,837,311 - RR42_RS08765 0.70 -0.9
1,837,311 - RR42_RS08765 0.70 +0.3
1,837,981 + +0.3
1,837,981 + +1.2
1,837,981 + +0.2
1,837,982 - -0.1
1,837,986 + +0.3
1,837,987 - +0.2
1,838,133 + -0.1
1,838,133 + +0.1
1,838,508 - RR42_RS08770 0.26 -1.2
1,839,334 + +1.0
1,839,384 + -0.0
1,839,385 - -0.1
1,839,396 + +0.1
1,839,447 + -0.8
1,839,448 - +0.4
1,839,518 - +0.3
1,839,518 - +1.3
1,839,657 + +0.1
1,839,811 + -1.7
1,839,936 + RR42_RS08775 0.16 -0.3
1,839,937 - RR42_RS08775 0.16 +0.7
1,839,937 - RR42_RS08775 0.16 +0.0
1,839,937 - RR42_RS08775 0.16 -1.3
1,840,143 - RR42_RS08775 0.38 -1.4
1,840,279 + RR42_RS08775 0.52 +0.8

Or see this region's nucleotide sequence