Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07610 and RR42_RS07615 are separated by 115 nucleotides RR42_RS07615 and RR42_RS07620 are separated by 396 nucleotides
RR42_RS07610: RR42_RS07610 - acetyl-CoA acetyltransferase, at 1,630,173 to 1,631,354
_RS07610
RR42_RS07615: RR42_RS07615 - 3-ketoacyl-ACP reductase, at 1,631,470 to 1,632,210
_RS07615
RR42_RS07620: RR42_RS07620 - polyhydroxyalkanoate synthesis repressor PhaR, at 1,632,607 to 1,633,158
_RS07620
Position (kb)
1631
1632
1633 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1630.626 kb on + strand, within RR42_RS07610 at 1630.626 kb on + strand, within RR42_RS07610 at 1630.627 kb on - strand, within RR42_RS07610 at 1630.636 kb on - strand, within RR42_RS07610 at 1630.674 kb on + strand, within RR42_RS07610 at 1630.675 kb on - strand, within RR42_RS07610 at 1631.174 kb on + strand, within RR42_RS07610 at 1631.175 kb on - strand, within RR42_RS07610 at 1631.444 kb on + strand at 1631.444 kb on + strand at 1631.451 kb on + strand at 1631.466 kb on - strand at 1631.466 kb on - strand at 1631.469 kb on + strand at 1631.469 kb on + strand at 1631.469 kb on + strand at 1631.470 kb on - strand at 1631.488 kb on + strand at 1631.488 kb on + strand at 1631.492 kb on + strand at 1631.492 kb on + strand at 1631.926 kb on + strand, within RR42_RS07615 at 1631.926 kb on + strand, within RR42_RS07615 at 1631.927 kb on - strand, within RR42_RS07615 at 1632.324 kb on + strand at 1632.401 kb on + strand at 1632.401 kb on + strand at 1632.442 kb on + strand at 1632.492 kb on + strand at 1632.492 kb on + strand at 1632.492 kb on + strand at 1632.493 kb on - strand at 1632.541 kb on + strand at 1632.541 kb on + strand at 1632.667 kb on + strand, within RR42_RS07620 at 1632.688 kb on + strand, within RR42_RS07620 at 1632.689 kb on - strand, within RR42_RS07620 at 1632.866 kb on - strand, within RR42_RS07620 at 1632.898 kb on + strand, within RR42_RS07620 at 1632.898 kb on + strand, within RR42_RS07620 at 1632.967 kb on + strand, within RR42_RS07620 at 1632.967 kb on + strand, within RR42_RS07620 at 1632.968 kb on - strand, within RR42_RS07620 at 1632.993 kb on + strand, within RR42_RS07620 at 1632.994 kb on - strand, within RR42_RS07620 at 1633.051 kb on + strand, within RR42_RS07620 at 1633.051 kb on + strand, within RR42_RS07620 at 1633.052 kb on - strand, within RR42_RS07620 at 1633.157 kb on - strand at 1633.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 1,630,626 + RR42_RS07610 0.38 +1.7 1,630,626 + RR42_RS07610 0.38 +0.3 1,630,627 - RR42_RS07610 0.38 -0.7 1,630,636 - RR42_RS07610 0.39 +3.2 1,630,674 + RR42_RS07610 0.42 +0.4 1,630,675 - RR42_RS07610 0.42 -0.7 1,631,174 + RR42_RS07610 0.85 +0.0 1,631,175 - RR42_RS07610 0.85 -1.3 1,631,444 + +0.3 1,631,444 + -0.5 1,631,451 + +0.3 1,631,466 - -0.1 1,631,466 - -0.4 1,631,469 + -0.9 1,631,469 + -1.2 1,631,469 + -0.8 1,631,470 - +0.7 1,631,488 + -2.2 1,631,488 + -0.9 1,631,492 + -0.6 1,631,492 + +0.2 1,631,926 + RR42_RS07615 0.62 -0.7 1,631,926 + RR42_RS07615 0.62 -2.5 1,631,927 - RR42_RS07615 0.62 +0.3 1,632,324 + +0.3 1,632,401 + -1.1 1,632,401 + -0.3 1,632,442 + -0.2 1,632,492 + +1.0 1,632,492 + -2.1 1,632,492 + -0.2 1,632,493 - +1.4 1,632,541 + -1.5 1,632,541 + +0.1 1,632,667 + RR42_RS07620 0.11 +0.1 1,632,688 + RR42_RS07620 0.15 +0.4 1,632,689 - RR42_RS07620 0.15 -0.7 1,632,866 - RR42_RS07620 0.47 -0.0 1,632,898 + RR42_RS07620 0.53 -0.4 1,632,898 + RR42_RS07620 0.53 +0.4 1,632,967 + RR42_RS07620 0.65 -0.5 1,632,967 + RR42_RS07620 0.65 -1.4 1,632,968 - RR42_RS07620 0.65 -3.8 1,632,993 + RR42_RS07620 0.70 -2.7 1,632,994 - RR42_RS07620 0.70 -0.6 1,633,051 + RR42_RS07620 0.80 +0.5 1,633,051 + RR42_RS07620 0.80 +1.0 1,633,052 - RR42_RS07620 0.81 +0.2 1,633,157 - +1.5 1,633,157 - +0.5
Or see this region's nucleotide sequence