Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07615

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07610 and RR42_RS07615 are separated by 115 nucleotidesRR42_RS07615 and RR42_RS07620 are separated by 396 nucleotides RR42_RS07610: RR42_RS07610 - acetyl-CoA acetyltransferase, at 1,630,173 to 1,631,354 _RS07610 RR42_RS07615: RR42_RS07615 - 3-ketoacyl-ACP reductase, at 1,631,470 to 1,632,210 _RS07615 RR42_RS07620: RR42_RS07620 - polyhydroxyalkanoate synthesis repressor PhaR, at 1,632,607 to 1,633,158 _RS07620 Position (kb) 1631 1632 1633Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1630.626 kb on + strand, within RR42_RS07610at 1630.626 kb on + strand, within RR42_RS07610at 1630.627 kb on - strand, within RR42_RS07610at 1630.636 kb on - strand, within RR42_RS07610at 1630.674 kb on + strand, within RR42_RS07610at 1630.675 kb on - strand, within RR42_RS07610at 1631.174 kb on + strand, within RR42_RS07610at 1631.175 kb on - strand, within RR42_RS07610at 1631.444 kb on + strandat 1631.444 kb on + strandat 1631.451 kb on + strandat 1631.466 kb on - strandat 1631.466 kb on - strandat 1631.469 kb on + strandat 1631.469 kb on + strandat 1631.469 kb on + strandat 1631.470 kb on - strandat 1631.488 kb on + strandat 1631.488 kb on + strandat 1631.492 kb on + strandat 1631.492 kb on + strandat 1631.926 kb on + strand, within RR42_RS07615at 1631.926 kb on + strand, within RR42_RS07615at 1631.927 kb on - strand, within RR42_RS07615at 1632.324 kb on + strandat 1632.401 kb on + strandat 1632.401 kb on + strandat 1632.442 kb on + strandat 1632.492 kb on + strandat 1632.492 kb on + strandat 1632.492 kb on + strandat 1632.493 kb on - strandat 1632.541 kb on + strandat 1632.541 kb on + strandat 1632.667 kb on + strand, within RR42_RS07620at 1632.688 kb on + strand, within RR42_RS07620at 1632.689 kb on - strand, within RR42_RS07620at 1632.866 kb on - strand, within RR42_RS07620at 1632.898 kb on + strand, within RR42_RS07620at 1632.898 kb on + strand, within RR42_RS07620at 1632.967 kb on + strand, within RR42_RS07620at 1632.967 kb on + strand, within RR42_RS07620at 1632.968 kb on - strand, within RR42_RS07620at 1632.993 kb on + strand, within RR42_RS07620at 1632.994 kb on - strand, within RR42_RS07620at 1633.051 kb on + strand, within RR42_RS07620at 1633.051 kb on + strand, within RR42_RS07620at 1633.052 kb on - strand, within RR42_RS07620at 1633.157 kb on - strandat 1633.157 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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1,630,626 + RR42_RS07610 0.38 +1.7
1,630,626 + RR42_RS07610 0.38 +0.3
1,630,627 - RR42_RS07610 0.38 -0.7
1,630,636 - RR42_RS07610 0.39 +3.2
1,630,674 + RR42_RS07610 0.42 +0.4
1,630,675 - RR42_RS07610 0.42 -0.7
1,631,174 + RR42_RS07610 0.85 +0.0
1,631,175 - RR42_RS07610 0.85 -1.3
1,631,444 + +0.3
1,631,444 + -0.5
1,631,451 + +0.3
1,631,466 - -0.1
1,631,466 - -0.4
1,631,469 + -0.9
1,631,469 + -1.2
1,631,469 + -0.8
1,631,470 - +0.7
1,631,488 + -2.2
1,631,488 + -0.9
1,631,492 + -0.6
1,631,492 + +0.2
1,631,926 + RR42_RS07615 0.62 -0.7
1,631,926 + RR42_RS07615 0.62 -2.5
1,631,927 - RR42_RS07615 0.62 +0.3
1,632,324 + +0.3
1,632,401 + -1.1
1,632,401 + -0.3
1,632,442 + -0.2
1,632,492 + +1.0
1,632,492 + -2.1
1,632,492 + -0.2
1,632,493 - +1.4
1,632,541 + -1.5
1,632,541 + +0.1
1,632,667 + RR42_RS07620 0.11 +0.1
1,632,688 + RR42_RS07620 0.15 +0.4
1,632,689 - RR42_RS07620 0.15 -0.7
1,632,866 - RR42_RS07620 0.47 -0.0
1,632,898 + RR42_RS07620 0.53 -0.4
1,632,898 + RR42_RS07620 0.53 +0.4
1,632,967 + RR42_RS07620 0.65 -0.5
1,632,967 + RR42_RS07620 0.65 -1.4
1,632,968 - RR42_RS07620 0.65 -3.8
1,632,993 + RR42_RS07620 0.70 -2.7
1,632,994 - RR42_RS07620 0.70 -0.6
1,633,051 + RR42_RS07620 0.80 +0.5
1,633,051 + RR42_RS07620 0.80 +1.0
1,633,052 - RR42_RS07620 0.81 +0.2
1,633,157 - +1.5
1,633,157 - +0.5

Or see this region's nucleotide sequence