Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07210 and RR42_RS07215 overlap by 4 nucleotides RR42_RS07215 and RR42_RS07220 are separated by 305 nucleotides RR42_RS07220 and RR42_RS07225 are separated by 295 nucleotides
RR42_RS07210: RR42_RS07210 - hypothetical protein, at 1,539,140 to 1,539,517
_RS07210
RR42_RS07215: RR42_RS07215 - hypothetical protein, at 1,539,514 to 1,539,840
_RS07215
RR42_RS07220: RR42_RS07220 - hypothetical protein, at 1,540,146 to 1,540,331
_RS07220
RR42_RS07225: RR42_RS07225 - hypothetical protein, at 1,540,627 to 1,540,842
_RS07225
Position (kb) 1540
1541 Strain fitness (log2 ratio) -1
0
1 at 1539.168 kb on + strand at 1539.208 kb on + strand, within RR42_RS07210 at 1539.208 kb on + strand, within RR42_RS07210 at 1539.208 kb on + strand, within RR42_RS07210 at 1539.209 kb on - strand, within RR42_RS07210 at 1539.209 kb on - strand, within RR42_RS07210 at 1539.209 kb on - strand, within RR42_RS07210 at 1539.209 kb on - strand, within RR42_RS07210 at 1539.210 kb on + strand, within RR42_RS07210 at 1539.211 kb on - strand, within RR42_RS07210 at 1539.258 kb on + strand, within RR42_RS07210 at 1539.258 kb on + strand, within RR42_RS07210 at 1539.258 kb on + strand, within RR42_RS07210 at 1539.259 kb on - strand, within RR42_RS07210 at 1539.260 kb on + strand, within RR42_RS07210 at 1539.260 kb on + strand, within RR42_RS07210 at 1539.261 kb on - strand, within RR42_RS07210 at 1539.261 kb on - strand, within RR42_RS07210 at 1539.329 kb on - strand, within RR42_RS07210 at 1539.329 kb on - strand, within RR42_RS07210 at 1539.364 kb on + strand, within RR42_RS07210 at 1539.365 kb on - strand, within RR42_RS07210 at 1539.365 kb on - strand, within RR42_RS07210 at 1539.365 kb on - strand, within RR42_RS07210 at 1539.365 kb on - strand, within RR42_RS07210 at 1539.490 kb on - strand at 1539.665 kb on + strand, within RR42_RS07215 at 1539.689 kb on - strand, within RR42_RS07215 at 1539.759 kb on - strand, within RR42_RS07215 at 1539.853 kb on + strand at 1539.854 kb on + strand at 1539.854 kb on + strand at 1539.855 kb on - strand at 1539.874 kb on + strand at 1539.874 kb on + strand at 1540.050 kb on + strand at 1540.051 kb on - strand at 1540.051 kb on - strand at 1540.104 kb on - strand at 1540.104 kb on - strand at 1540.177 kb on - strand, within RR42_RS07220 at 1540.195 kb on - strand, within RR42_RS07220 at 1540.206 kb on - strand, within RR42_RS07220 at 1540.206 kb on - strand, within RR42_RS07220 at 1540.207 kb on + strand, within RR42_RS07220 at 1540.451 kb on + strand at 1540.451 kb on + strand at 1540.452 kb on - strand at 1540.466 kb on + strand at 1540.572 kb on + strand at 1540.573 kb on - strand at 1540.573 kb on - strand at 1540.715 kb on + strand, within RR42_RS07225 at 1540.894 kb on + strand at 1540.894 kb on + strand at 1540.894 kb on + strand at 1540.918 kb on + strand at 1541.243 kb on + strand at 1541.244 kb on - strand at 1541.273 kb on + strand at 1541.273 kb on + strand at 1541.273 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 1,539,168 + -0.3 1,539,208 + RR42_RS07210 0.18 +0.0 1,539,208 + RR42_RS07210 0.18 +1.0 1,539,208 + RR42_RS07210 0.18 -0.6 1,539,209 - RR42_RS07210 0.18 +0.4 1,539,209 - RR42_RS07210 0.18 -1.1 1,539,209 - RR42_RS07210 0.18 -1.0 1,539,209 - RR42_RS07210 0.18 -0.6 1,539,210 + RR42_RS07210 0.19 +1.1 1,539,211 - RR42_RS07210 0.19 +0.3 1,539,258 + RR42_RS07210 0.31 -0.4 1,539,258 + RR42_RS07210 0.31 -0.9 1,539,258 + RR42_RS07210 0.31 +0.2 1,539,259 - RR42_RS07210 0.31 -0.4 1,539,260 + RR42_RS07210 0.32 +0.8 1,539,260 + RR42_RS07210 0.32 -0.5 1,539,261 - RR42_RS07210 0.32 -0.3 1,539,261 - RR42_RS07210 0.32 +0.2 1,539,329 - RR42_RS07210 0.50 +1.3 1,539,329 - RR42_RS07210 0.50 -1.7 1,539,364 + RR42_RS07210 0.59 -0.5 1,539,365 - RR42_RS07210 0.60 -0.6 1,539,365 - RR42_RS07210 0.60 +0.3 1,539,365 - RR42_RS07210 0.60 +0.3 1,539,365 - RR42_RS07210 0.60 +1.5 1,539,490 - -1.0 1,539,665 + RR42_RS07215 0.46 -0.7 1,539,689 - RR42_RS07215 0.54 +0.8 1,539,759 - RR42_RS07215 0.75 +0.1 1,539,853 + -0.6 1,539,854 + +0.1 1,539,854 + +0.5 1,539,855 - +0.0 1,539,874 + -0.6 1,539,874 + +0.3 1,540,050 + -0.6 1,540,051 - +0.7 1,540,051 - +0.6 1,540,104 - +0.9 1,540,104 - -1.1 1,540,177 - RR42_RS07220 0.17 +0.7 1,540,195 - RR42_RS07220 0.26 +0.5 1,540,206 - RR42_RS07220 0.32 -0.5 1,540,206 - RR42_RS07220 0.32 +0.3 1,540,207 + RR42_RS07220 0.33 +1.4 1,540,451 + -0.1 1,540,451 + -0.1 1,540,452 - +0.1 1,540,466 + -0.1 1,540,572 + -0.2 1,540,573 - +0.7 1,540,573 - +0.2 1,540,715 + RR42_RS07225 0.41 +0.1 1,540,894 + +0.1 1,540,894 + -0.7 1,540,894 + -0.4 1,540,918 + -0.2 1,541,243 + -1.3 1,541,244 - +0.5 1,541,273 + -0.1 1,541,273 + +0.9 1,541,273 + +0.7
Or see this region's nucleotide sequence