Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07035 and RR42_RS07040 are separated by 12 nucleotides RR42_RS07040 and RR42_RS07045 are separated by 12 nucleotides RR42_RS07045 and RR42_RS07050 are separated by 198 nucleotides
RR42_RS07035: RR42_RS07035 - hypothetical protein, at 1,509,362 to 1,510,060
_RS07035
RR42_RS07040: RR42_RS07040 - hypothetical protein, at 1,510,073 to 1,510,633
_RS07040
RR42_RS07045: RR42_RS07045 - hypothetical protein, at 1,510,646 to 1,510,951
_RS07045
RR42_RS07050: RR42_RS07050 - hypothetical protein, at 1,511,150 to 1,511,752
_RS07050
Position (kb) 1510
1511 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1509.126 kb on + strand at 1509.127 kb on - strand at 1509.127 kb on - strand at 1509.200 kb on + strand at 1509.238 kb on + strand at 1509.238 kb on + strand at 1509.321 kb on - strand at 1509.352 kb on + strand at 1509.352 kb on + strand at 1509.352 kb on + strand at 1509.353 kb on - strand at 1509.400 kb on - strand at 1509.400 kb on - strand at 1509.404 kb on - strand at 1509.404 kb on - strand at 1509.404 kb on - strand at 1509.465 kb on + strand, within RR42_RS07035 at 1509.466 kb on - strand, within RR42_RS07035 at 1509.539 kb on + strand, within RR42_RS07035 at 1509.540 kb on - strand, within RR42_RS07035 at 1509.720 kb on + strand, within RR42_RS07035 at 1509.805 kb on + strand, within RR42_RS07035 at 1509.885 kb on + strand, within RR42_RS07035 at 1509.885 kb on + strand, within RR42_RS07035 at 1510.056 kb on - strand at 1510.056 kb on - strand at 1510.059 kb on - strand at 1510.109 kb on + strand at 1510.109 kb on + strand at 1510.109 kb on + strand at 1510.110 kb on - strand at 1510.110 kb on - strand at 1510.120 kb on + strand at 1510.121 kb on - strand at 1510.121 kb on - strand at 1510.210 kb on + strand, within RR42_RS07040 at 1510.242 kb on + strand, within RR42_RS07040 at 1510.371 kb on - strand, within RR42_RS07040 at 1510.371 kb on - strand, within RR42_RS07040 at 1510.560 kb on - strand, within RR42_RS07040 at 1510.585 kb on - strand at 1510.686 kb on - strand, within RR42_RS07045 at 1511.024 kb on + strand at 1511.024 kb on + strand at 1511.024 kb on + strand at 1511.024 kb on + strand at 1511.025 kb on - strand at 1511.025 kb on - strand at 1511.178 kb on - strand at 1511.285 kb on + strand, within RR42_RS07050 at 1511.472 kb on - strand, within RR42_RS07050 at 1511.547 kb on + strand, within RR42_RS07050 at 1511.547 kb on + strand, within RR42_RS07050 at 1511.548 kb on - strand, within RR42_RS07050 at 1511.585 kb on + strand, within RR42_RS07050 at 1511.585 kb on + strand, within RR42_RS07050
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 1,509,126 + +1.1 1,509,127 - +0.6 1,509,127 - +0.6 1,509,200 + -0.3 1,509,238 + -0.3 1,509,238 + -0.5 1,509,321 - +1.3 1,509,352 + -1.0 1,509,352 + -1.3 1,509,352 + +0.4 1,509,353 - -0.7 1,509,400 - +0.4 1,509,400 - -1.1 1,509,404 - -0.0 1,509,404 - -0.6 1,509,404 - -0.6 1,509,465 + RR42_RS07035 0.15 -1.1 1,509,466 - RR42_RS07035 0.15 -1.0 1,509,539 + RR42_RS07035 0.25 -0.9 1,509,540 - RR42_RS07035 0.25 -1.0 1,509,720 + RR42_RS07035 0.51 +1.0 1,509,805 + RR42_RS07035 0.63 +0.0 1,509,885 + RR42_RS07035 0.75 +1.6 1,509,885 + RR42_RS07035 0.75 -1.5 1,510,056 - -1.6 1,510,056 - -0.3 1,510,059 - +0.3 1,510,109 + +1.4 1,510,109 + -0.0 1,510,109 + -0.5 1,510,110 - -0.0 1,510,110 - +1.1 1,510,120 + -0.3 1,510,121 - -0.8 1,510,121 - +2.8 1,510,210 + RR42_RS07040 0.24 -0.9 1,510,242 + RR42_RS07040 0.30 +0.4 1,510,371 - RR42_RS07040 0.53 -0.4 1,510,371 - RR42_RS07040 0.53 -2.0 1,510,560 - RR42_RS07040 0.87 +1.2 1,510,585 - +1.3 1,510,686 - RR42_RS07045 0.13 +0.5 1,511,024 + +0.3 1,511,024 + +2.0 1,511,024 + +1.2 1,511,024 + +0.6 1,511,025 - -0.4 1,511,025 - +0.4 1,511,178 - +0.3 1,511,285 + RR42_RS07050 0.22 +0.3 1,511,472 - RR42_RS07050 0.53 +0.8 1,511,547 + RR42_RS07050 0.66 +1.1 1,511,547 + RR42_RS07050 0.66 -0.2 1,511,548 - RR42_RS07050 0.66 -0.6 1,511,585 + RR42_RS07050 0.72 -2.5 1,511,585 + RR42_RS07050 0.72 +0.4
Or see this region's nucleotide sequence