Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04895

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04885 and RR42_RS04890 are separated by 13 nucleotidesRR42_RS04890 and RR42_RS04895 are separated by 139 nucleotidesRR42_RS04895 and RR42_RS04900 are separated by 171 nucleotides RR42_RS04885: RR42_RS04885 - nucleoside-triphosphate diphosphatase, at 1,084,074 to 1,084,691 _RS04885 RR42_RS04890: RR42_RS04890 - ribonuclease PH, at 1,084,705 to 1,085,424 _RS04890 RR42_RS04895: RR42_RS04895 - serine/threonine protein phosphatase, at 1,085,564 to 1,086,478 _RS04895 RR42_RS04900: RR42_RS04900 - serine/threonine protein kinase, at 1,086,650 to 1,087,702 _RS04900 Position (kb) 1085 1086 1087Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1084.704 kb on - strandat 1084.895 kb on + strand, within RR42_RS04890at 1084.896 kb on - strand, within RR42_RS04890at 1085.238 kb on - strand, within RR42_RS04890at 1085.366 kb on + strandat 1085.366 kb on + strandat 1085.367 kb on - strandat 1085.385 kb on + strandat 1085.385 kb on + strandat 1085.906 kb on + strand, within RR42_RS04895at 1085.907 kb on - strand, within RR42_RS04895at 1085.907 kb on - strand, within RR42_RS04895at 1085.907 kb on - strand, within RR42_RS04895at 1085.988 kb on + strand, within RR42_RS04895at 1085.988 kb on + strand, within RR42_RS04895at 1085.988 kb on + strand, within RR42_RS04895at 1085.988 kb on + strand, within RR42_RS04895at 1085.988 kb on + strand, within RR42_RS04895at 1085.988 kb on + strand, within RR42_RS04895at 1085.988 kb on + strand, within RR42_RS04895at 1085.989 kb on - strand, within RR42_RS04895at 1085.989 kb on - strand, within RR42_RS04895at 1085.989 kb on - strand, within RR42_RS04895at 1085.989 kb on - strand, within RR42_RS04895at 1085.989 kb on - strand, within RR42_RS04895at 1086.094 kb on + strand, within RR42_RS04895at 1086.104 kb on + strand, within RR42_RS04895at 1086.105 kb on - strand, within RR42_RS04895at 1086.105 kb on - strand, within RR42_RS04895at 1086.111 kb on + strand, within RR42_RS04895at 1086.111 kb on + strand, within RR42_RS04895at 1086.111 kb on + strand, within RR42_RS04895at 1086.111 kb on + strand, within RR42_RS04895at 1086.181 kb on + strand, within RR42_RS04895at 1086.181 kb on + strand, within RR42_RS04895at 1086.217 kb on - strand, within RR42_RS04895at 1086.411 kb on + strandat 1086.411 kb on + strandat 1086.411 kb on + strandat 1086.412 kb on - strandat 1086.412 kb on - strandat 1086.412 kb on - strandat 1086.462 kb on + strandat 1086.463 kb on - strandat 1086.487 kb on + strandat 1086.488 kb on + strandat 1086.488 kb on - strandat 1086.488 kb on - strandat 1086.576 kb on + strandat 1086.576 kb on + strandat 1086.576 kb on + strandat 1086.576 kb on + strandat 1086.576 kb on + strandat 1086.576 kb on + strandat 1086.577 kb on - strandat 1086.577 kb on - strandat 1086.577 kb on - strandat 1086.577 kb on - strandat 1086.577 kb on - strandat 1086.577 kb on - strandat 1086.577 kb on - strandat 1086.577 kb on - strandat 1086.584 kb on - strandat 1086.589 kb on + strandat 1086.788 kb on + strand, within RR42_RS04900at 1086.898 kb on + strand, within RR42_RS04900at 1086.898 kb on + strand, within RR42_RS04900at 1086.899 kb on - strand, within RR42_RS04900at 1086.899 kb on - strand, within RR42_RS04900at 1086.899 kb on - strand, within RR42_RS04900at 1086.899 kb on - strand, within RR42_RS04900at 1086.900 kb on + strand, within RR42_RS04900at 1086.900 kb on + strand, within RR42_RS04900at 1086.901 kb on - strand, within RR42_RS04900at 1086.993 kb on + strand, within RR42_RS04900at 1086.994 kb on - strand, within RR42_RS04900at 1087.014 kb on + strand, within RR42_RS04900at 1087.014 kb on + strand, within RR42_RS04900at 1087.015 kb on - strand, within RR42_RS04900at 1087.015 kb on - strand, within RR42_RS04900at 1087.015 kb on - strand, within RR42_RS04900at 1087.054 kb on - strand, within RR42_RS04900at 1087.083 kb on + strand, within RR42_RS04900at 1087.083 kb on + strand, within RR42_RS04900at 1087.083 kb on + strand, within RR42_RS04900at 1087.083 kb on + strand, within RR42_RS04900at 1087.084 kb on - strand, within RR42_RS04900at 1087.173 kb on + strand, within RR42_RS04900at 1087.173 kb on + strand, within RR42_RS04900at 1087.173 kb on + strand, within RR42_RS04900at 1087.173 kb on + strand, within RR42_RS04900at 1087.173 kb on + strand, within RR42_RS04900at 1087.174 kb on - strand, within RR42_RS04900at 1087.174 kb on - strand, within RR42_RS04900at 1087.174 kb on - strand, within RR42_RS04900at 1087.174 kb on - strand, within RR42_RS04900at 1087.174 kb on - strand, within RR42_RS04900at 1087.216 kb on + strand, within RR42_RS04900at 1087.217 kb on - strand, within RR42_RS04900at 1087.344 kb on + strand, within RR42_RS04900at 1087.344 kb on + strand, within RR42_RS04900at 1087.345 kb on - strand, within RR42_RS04900at 1087.345 kb on - strand, within RR42_RS04900at 1087.359 kb on + strand, within RR42_RS04900at 1087.359 kb on + strand, within RR42_RS04900at 1087.359 kb on + strand, within RR42_RS04900at 1087.360 kb on - strand, within RR42_RS04900at 1087.360 kb on - strand, within RR42_RS04900at 1087.360 kb on - strand, within RR42_RS04900at 1087.360 kb on - strand, within RR42_RS04900at 1087.450 kb on - strand, within RR42_RS04900

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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1,084,704 - +0.3
1,084,895 + RR42_RS04890 0.26 -0.1
1,084,896 - RR42_RS04890 0.27 +0.3
1,085,238 - RR42_RS04890 0.74 -0.7
1,085,366 + -1.6
1,085,366 + -0.8
1,085,367 - -1.0
1,085,385 + +0.5
1,085,385 + +1.0
1,085,906 + RR42_RS04895 0.37 -0.5
1,085,907 - RR42_RS04895 0.37 -2.2
1,085,907 - RR42_RS04895 0.37 -2.4
1,085,907 - RR42_RS04895 0.37 -1.6
1,085,988 + RR42_RS04895 0.46 -4.1
1,085,988 + RR42_RS04895 0.46 -1.9
1,085,988 + RR42_RS04895 0.46 -0.7
1,085,988 + RR42_RS04895 0.46 -0.2
1,085,988 + RR42_RS04895 0.46 -1.8
1,085,988 + RR42_RS04895 0.46 -2.0
1,085,988 + RR42_RS04895 0.46 -2.1
1,085,989 - RR42_RS04895 0.46 -3.2
1,085,989 - RR42_RS04895 0.46 +0.2
1,085,989 - RR42_RS04895 0.46 -2.4
1,085,989 - RR42_RS04895 0.46 -1.3
1,085,989 - RR42_RS04895 0.46 -2.9
1,086,094 + RR42_RS04895 0.58 -0.9
1,086,104 + RR42_RS04895 0.59 -1.1
1,086,105 - RR42_RS04895 0.59 -0.6
1,086,105 - RR42_RS04895 0.59 -0.3
1,086,111 + RR42_RS04895 0.60 +0.1
1,086,111 + RR42_RS04895 0.60 -1.6
1,086,111 + RR42_RS04895 0.60 -3.1
1,086,111 + RR42_RS04895 0.60 -3.2
1,086,181 + RR42_RS04895 0.67 -1.2
1,086,181 + RR42_RS04895 0.67 -1.3
1,086,217 - RR42_RS04895 0.71 +1.2
1,086,411 + -1.8
1,086,411 + -1.4
1,086,411 + -2.3
1,086,412 - -1.5
1,086,412 - -2.9
1,086,412 - -1.1
1,086,462 + -2.7
1,086,463 - -1.5
1,086,487 + -2.8
1,086,488 + -1.0
1,086,488 - -1.2
1,086,488 - -2.6
1,086,576 + +1.6
1,086,576 + -1.1
1,086,576 + -0.3
1,086,576 + -1.8
1,086,576 + +0.4
1,086,576 + +0.0
1,086,577 - +1.0
1,086,577 - +0.3
1,086,577 - -0.2
1,086,577 - +1.4
1,086,577 - -0.8
1,086,577 - +1.1
1,086,577 - +0.5
1,086,577 - +0.2
1,086,584 - -0.5
1,086,589 + -0.6
1,086,788 + RR42_RS04900 0.13 -0.3
1,086,898 + RR42_RS04900 0.24 +0.2
1,086,898 + RR42_RS04900 0.24 -0.3
1,086,899 - RR42_RS04900 0.24 -0.6
1,086,899 - RR42_RS04900 0.24 +0.0
1,086,899 - RR42_RS04900 0.24 +0.0
1,086,899 - RR42_RS04900 0.24 -0.0
1,086,900 + RR42_RS04900 0.24 -1.4
1,086,900 + RR42_RS04900 0.24 -1.8
1,086,901 - RR42_RS04900 0.24 -0.9
1,086,993 + RR42_RS04900 0.33 +0.9
1,086,994 - RR42_RS04900 0.33 -0.5
1,087,014 + RR42_RS04900 0.35 +0.3
1,087,014 + RR42_RS04900 0.35 +0.2
1,087,015 - RR42_RS04900 0.35 -0.5
1,087,015 - RR42_RS04900 0.35 +0.2
1,087,015 - RR42_RS04900 0.35 +2.0
1,087,054 - RR42_RS04900 0.38 -1.0
1,087,083 + RR42_RS04900 0.41 +0.7
1,087,083 + RR42_RS04900 0.41 -0.9
1,087,083 + RR42_RS04900 0.41 -1.1
1,087,083 + RR42_RS04900 0.41 +0.7
1,087,084 - RR42_RS04900 0.41 -0.9
1,087,173 + RR42_RS04900 0.50 -0.1
1,087,173 + RR42_RS04900 0.50 -1.6
1,087,173 + RR42_RS04900 0.50 +0.2
1,087,173 + RR42_RS04900 0.50 -0.8
1,087,173 + RR42_RS04900 0.50 -0.4
1,087,174 - RR42_RS04900 0.50 -1.1
1,087,174 - RR42_RS04900 0.50 +1.4
1,087,174 - RR42_RS04900 0.50 -1.8
1,087,174 - RR42_RS04900 0.50 -0.6
1,087,174 - RR42_RS04900 0.50 -0.3
1,087,216 + RR42_RS04900 0.54 -1.4
1,087,217 - RR42_RS04900 0.54 +0.4
1,087,344 + RR42_RS04900 0.66 -1.2
1,087,344 + RR42_RS04900 0.66 -1.1
1,087,345 - RR42_RS04900 0.66 -1.7
1,087,345 - RR42_RS04900 0.66 -1.9
1,087,359 + RR42_RS04900 0.67 -2.5
1,087,359 + RR42_RS04900 0.67 -0.5
1,087,359 + RR42_RS04900 0.67 -0.3
1,087,360 - RR42_RS04900 0.67 +0.2
1,087,360 - RR42_RS04900 0.67 +1.3
1,087,360 - RR42_RS04900 0.67 -0.9
1,087,360 - RR42_RS04900 0.67 +0.8
1,087,450 - RR42_RS04900 0.76 +0.9

Or see this region's nucleotide sequence