Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04885 and RR42_RS04890 are separated by 13 nucleotides RR42_RS04890 and RR42_RS04895 are separated by 139 nucleotides RR42_RS04895 and RR42_RS04900 are separated by 171 nucleotides
RR42_RS04885: RR42_RS04885 - nucleoside-triphosphate diphosphatase, at 1,084,074 to 1,084,691
_RS04885
RR42_RS04890: RR42_RS04890 - ribonuclease PH, at 1,084,705 to 1,085,424
_RS04890
RR42_RS04895: RR42_RS04895 - serine/threonine protein phosphatase, at 1,085,564 to 1,086,478
_RS04895
RR42_RS04900: RR42_RS04900 - serine/threonine protein kinase, at 1,086,650 to 1,087,702
_RS04900
Position (kb)
1085
1086
1087 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1084.704 kb on - strand at 1084.895 kb on + strand, within RR42_RS04890 at 1084.896 kb on - strand, within RR42_RS04890 at 1085.238 kb on - strand, within RR42_RS04890 at 1085.366 kb on + strand at 1085.366 kb on + strand at 1085.367 kb on - strand at 1085.385 kb on + strand at 1085.385 kb on + strand at 1085.906 kb on + strand, within RR42_RS04895 at 1085.907 kb on - strand, within RR42_RS04895 at 1085.907 kb on - strand, within RR42_RS04895 at 1085.907 kb on - strand, within RR42_RS04895 at 1085.988 kb on + strand, within RR42_RS04895 at 1085.988 kb on + strand, within RR42_RS04895 at 1085.988 kb on + strand, within RR42_RS04895 at 1085.988 kb on + strand, within RR42_RS04895 at 1085.988 kb on + strand, within RR42_RS04895 at 1085.988 kb on + strand, within RR42_RS04895 at 1085.988 kb on + strand, within RR42_RS04895 at 1085.989 kb on - strand, within RR42_RS04895 at 1085.989 kb on - strand, within RR42_RS04895 at 1085.989 kb on - strand, within RR42_RS04895 at 1085.989 kb on - strand, within RR42_RS04895 at 1085.989 kb on - strand, within RR42_RS04895 at 1086.094 kb on + strand, within RR42_RS04895 at 1086.104 kb on + strand, within RR42_RS04895 at 1086.105 kb on - strand, within RR42_RS04895 at 1086.105 kb on - strand, within RR42_RS04895 at 1086.111 kb on + strand, within RR42_RS04895 at 1086.111 kb on + strand, within RR42_RS04895 at 1086.111 kb on + strand, within RR42_RS04895 at 1086.111 kb on + strand, within RR42_RS04895 at 1086.181 kb on + strand, within RR42_RS04895 at 1086.181 kb on + strand, within RR42_RS04895 at 1086.217 kb on - strand, within RR42_RS04895 at 1086.411 kb on + strand at 1086.411 kb on + strand at 1086.411 kb on + strand at 1086.412 kb on - strand at 1086.412 kb on - strand at 1086.412 kb on - strand at 1086.462 kb on + strand at 1086.463 kb on - strand at 1086.487 kb on + strand at 1086.488 kb on + strand at 1086.488 kb on - strand at 1086.488 kb on - strand at 1086.576 kb on + strand at 1086.576 kb on + strand at 1086.576 kb on + strand at 1086.576 kb on + strand at 1086.576 kb on + strand at 1086.576 kb on + strand at 1086.577 kb on - strand at 1086.577 kb on - strand at 1086.577 kb on - strand at 1086.577 kb on - strand at 1086.577 kb on - strand at 1086.577 kb on - strand at 1086.577 kb on - strand at 1086.577 kb on - strand at 1086.584 kb on - strand at 1086.589 kb on + strand at 1086.788 kb on + strand, within RR42_RS04900 at 1086.898 kb on + strand, within RR42_RS04900 at 1086.898 kb on + strand, within RR42_RS04900 at 1086.899 kb on - strand, within RR42_RS04900 at 1086.899 kb on - strand, within RR42_RS04900 at 1086.899 kb on - strand, within RR42_RS04900 at 1086.899 kb on - strand, within RR42_RS04900 at 1086.900 kb on + strand, within RR42_RS04900 at 1086.900 kb on + strand, within RR42_RS04900 at 1086.901 kb on - strand, within RR42_RS04900 at 1086.993 kb on + strand, within RR42_RS04900 at 1086.994 kb on - strand, within RR42_RS04900 at 1087.014 kb on + strand, within RR42_RS04900 at 1087.014 kb on + strand, within RR42_RS04900 at 1087.015 kb on - strand, within RR42_RS04900 at 1087.015 kb on - strand, within RR42_RS04900 at 1087.015 kb on - strand, within RR42_RS04900 at 1087.054 kb on - strand, within RR42_RS04900 at 1087.083 kb on + strand, within RR42_RS04900 at 1087.083 kb on + strand, within RR42_RS04900 at 1087.083 kb on + strand, within RR42_RS04900 at 1087.083 kb on + strand, within RR42_RS04900 at 1087.084 kb on - strand, within RR42_RS04900 at 1087.173 kb on + strand, within RR42_RS04900 at 1087.173 kb on + strand, within RR42_RS04900 at 1087.173 kb on + strand, within RR42_RS04900 at 1087.173 kb on + strand, within RR42_RS04900 at 1087.173 kb on + strand, within RR42_RS04900 at 1087.174 kb on - strand, within RR42_RS04900 at 1087.174 kb on - strand, within RR42_RS04900 at 1087.174 kb on - strand, within RR42_RS04900 at 1087.174 kb on - strand, within RR42_RS04900 at 1087.174 kb on - strand, within RR42_RS04900 at 1087.216 kb on + strand, within RR42_RS04900 at 1087.217 kb on - strand, within RR42_RS04900 at 1087.344 kb on + strand, within RR42_RS04900 at 1087.344 kb on + strand, within RR42_RS04900 at 1087.345 kb on - strand, within RR42_RS04900 at 1087.345 kb on - strand, within RR42_RS04900 at 1087.359 kb on + strand, within RR42_RS04900 at 1087.359 kb on + strand, within RR42_RS04900 at 1087.359 kb on + strand, within RR42_RS04900 at 1087.360 kb on - strand, within RR42_RS04900 at 1087.360 kb on - strand, within RR42_RS04900 at 1087.360 kb on - strand, within RR42_RS04900 at 1087.360 kb on - strand, within RR42_RS04900 at 1087.450 kb on - strand, within RR42_RS04900
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 1,084,704 - +0.3 1,084,895 + RR42_RS04890 0.26 -0.1 1,084,896 - RR42_RS04890 0.27 +0.3 1,085,238 - RR42_RS04890 0.74 -0.7 1,085,366 + -1.6 1,085,366 + -0.8 1,085,367 - -1.0 1,085,385 + +0.5 1,085,385 + +1.0 1,085,906 + RR42_RS04895 0.37 -0.5 1,085,907 - RR42_RS04895 0.37 -2.2 1,085,907 - RR42_RS04895 0.37 -2.4 1,085,907 - RR42_RS04895 0.37 -1.6 1,085,988 + RR42_RS04895 0.46 -4.1 1,085,988 + RR42_RS04895 0.46 -1.9 1,085,988 + RR42_RS04895 0.46 -0.7 1,085,988 + RR42_RS04895 0.46 -0.2 1,085,988 + RR42_RS04895 0.46 -1.8 1,085,988 + RR42_RS04895 0.46 -2.0 1,085,988 + RR42_RS04895 0.46 -2.1 1,085,989 - RR42_RS04895 0.46 -3.2 1,085,989 - RR42_RS04895 0.46 +0.2 1,085,989 - RR42_RS04895 0.46 -2.4 1,085,989 - RR42_RS04895 0.46 -1.3 1,085,989 - RR42_RS04895 0.46 -2.9 1,086,094 + RR42_RS04895 0.58 -0.9 1,086,104 + RR42_RS04895 0.59 -1.1 1,086,105 - RR42_RS04895 0.59 -0.6 1,086,105 - RR42_RS04895 0.59 -0.3 1,086,111 + RR42_RS04895 0.60 +0.1 1,086,111 + RR42_RS04895 0.60 -1.6 1,086,111 + RR42_RS04895 0.60 -3.1 1,086,111 + RR42_RS04895 0.60 -3.2 1,086,181 + RR42_RS04895 0.67 -1.2 1,086,181 + RR42_RS04895 0.67 -1.3 1,086,217 - RR42_RS04895 0.71 +1.2 1,086,411 + -1.8 1,086,411 + -1.4 1,086,411 + -2.3 1,086,412 - -1.5 1,086,412 - -2.9 1,086,412 - -1.1 1,086,462 + -2.7 1,086,463 - -1.5 1,086,487 + -2.8 1,086,488 + -1.0 1,086,488 - -1.2 1,086,488 - -2.6 1,086,576 + +1.6 1,086,576 + -1.1 1,086,576 + -0.3 1,086,576 + -1.8 1,086,576 + +0.4 1,086,576 + +0.0 1,086,577 - +1.0 1,086,577 - +0.3 1,086,577 - -0.2 1,086,577 - +1.4 1,086,577 - -0.8 1,086,577 - +1.1 1,086,577 - +0.5 1,086,577 - +0.2 1,086,584 - -0.5 1,086,589 + -0.6 1,086,788 + RR42_RS04900 0.13 -0.3 1,086,898 + RR42_RS04900 0.24 +0.2 1,086,898 + RR42_RS04900 0.24 -0.3 1,086,899 - RR42_RS04900 0.24 -0.6 1,086,899 - RR42_RS04900 0.24 +0.0 1,086,899 - RR42_RS04900 0.24 +0.0 1,086,899 - RR42_RS04900 0.24 -0.0 1,086,900 + RR42_RS04900 0.24 -1.4 1,086,900 + RR42_RS04900 0.24 -1.8 1,086,901 - RR42_RS04900 0.24 -0.9 1,086,993 + RR42_RS04900 0.33 +0.9 1,086,994 - RR42_RS04900 0.33 -0.5 1,087,014 + RR42_RS04900 0.35 +0.3 1,087,014 + RR42_RS04900 0.35 +0.2 1,087,015 - RR42_RS04900 0.35 -0.5 1,087,015 - RR42_RS04900 0.35 +0.2 1,087,015 - RR42_RS04900 0.35 +2.0 1,087,054 - RR42_RS04900 0.38 -1.0 1,087,083 + RR42_RS04900 0.41 +0.7 1,087,083 + RR42_RS04900 0.41 -0.9 1,087,083 + RR42_RS04900 0.41 -1.1 1,087,083 + RR42_RS04900 0.41 +0.7 1,087,084 - RR42_RS04900 0.41 -0.9 1,087,173 + RR42_RS04900 0.50 -0.1 1,087,173 + RR42_RS04900 0.50 -1.6 1,087,173 + RR42_RS04900 0.50 +0.2 1,087,173 + RR42_RS04900 0.50 -0.8 1,087,173 + RR42_RS04900 0.50 -0.4 1,087,174 - RR42_RS04900 0.50 -1.1 1,087,174 - RR42_RS04900 0.50 +1.4 1,087,174 - RR42_RS04900 0.50 -1.8 1,087,174 - RR42_RS04900 0.50 -0.6 1,087,174 - RR42_RS04900 0.50 -0.3 1,087,216 + RR42_RS04900 0.54 -1.4 1,087,217 - RR42_RS04900 0.54 +0.4 1,087,344 + RR42_RS04900 0.66 -1.2 1,087,344 + RR42_RS04900 0.66 -1.1 1,087,345 - RR42_RS04900 0.66 -1.7 1,087,345 - RR42_RS04900 0.66 -1.9 1,087,359 + RR42_RS04900 0.67 -2.5 1,087,359 + RR42_RS04900 0.67 -0.5 1,087,359 + RR42_RS04900 0.67 -0.3 1,087,360 - RR42_RS04900 0.67 +0.2 1,087,360 - RR42_RS04900 0.67 +1.3 1,087,360 - RR42_RS04900 0.67 -0.9 1,087,360 - RR42_RS04900 0.67 +0.8 1,087,450 - RR42_RS04900 0.76 +0.9
Or see this region's nucleotide sequence