Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04175 and RR42_RS04180 overlap by 64 nucleotides RR42_RS04180 and RR42_RS04185 are separated by 38 nucleotides
RR42_RS04175: RR42_RS04175 - hypothetical protein, at 922,643 to 923,086
_RS04175
RR42_RS04180: RR42_RS04180 - methyltransferase, at 923,023 to 923,757
_RS04180
RR42_RS04185: RR42_RS04185 - Fis family transcriptional regulator, at 923,796 to 925,172
_RS04185
Position (kb) 923
924
925
926 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 922.847 kb on - strand, within RR42_RS04175 at 922.847 kb on - strand, within RR42_RS04175 at 922.857 kb on + strand, within RR42_RS04175 at 922.991 kb on - strand, within RR42_RS04175 at 922.991 kb on - strand, within RR42_RS04175 at 923.105 kb on - strand, within RR42_RS04180 at 923.342 kb on + strand, within RR42_RS04180 at 923.741 kb on + strand at 923.741 kb on + strand at 923.772 kb on - strand at 923.772 kb on - strand at 924.152 kb on + strand, within RR42_RS04185 at 924.152 kb on + strand, within RR42_RS04185 at 924.153 kb on - strand, within RR42_RS04185 at 924.268 kb on + strand, within RR42_RS04185 at 924.269 kb on - strand, within RR42_RS04185 at 924.431 kb on + strand, within RR42_RS04185 at 924.431 kb on + strand, within RR42_RS04185 at 924.431 kb on + strand, within RR42_RS04185 at 924.633 kb on + strand, within RR42_RS04185 at 924.633 kb on + strand, within RR42_RS04185 at 924.677 kb on + strand, within RR42_RS04185 at 924.678 kb on - strand, within RR42_RS04185 at 924.699 kb on + strand, within RR42_RS04185 at 924.842 kb on + strand, within RR42_RS04185 at 924.842 kb on + strand, within RR42_RS04185 at 924.842 kb on + strand, within RR42_RS04185 at 924.843 kb on - strand, within RR42_RS04185 at 924.860 kb on - strand, within RR42_RS04185 at 924.860 kb on - strand, within RR42_RS04185 at 924.863 kb on - strand, within RR42_RS04185 at 924.945 kb on - strand, within RR42_RS04185 at 925.005 kb on + strand, within RR42_RS04185 at 925.005 kb on + strand, within RR42_RS04185 at 925.005 kb on + strand, within RR42_RS04185 at 925.005 kb on + strand, within RR42_RS04185 at 925.005 kb on + strand, within RR42_RS04185 at 925.006 kb on - strand, within RR42_RS04185 at 925.006 kb on - strand, within RR42_RS04185 at 925.006 kb on - strand, within RR42_RS04185 at 925.007 kb on + strand, within RR42_RS04185 at 925.163 kb on - strand at 925.172 kb on + strand at 925.172 kb on + strand at 925.172 kb on + strand at 925.173 kb on - strand at 925.174 kb on + strand at 925.174 kb on + strand at 925.174 kb on + strand at 925.174 kb on + strand at 925.175 kb on - strand at 925.210 kb on - strand at 925.210 kb on - strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.621 kb on + strand at 925.621 kb on + strand at 925.622 kb on - strand at 925.622 kb on - strand at 925.622 kb on - strand at 925.669 kb on + strand at 925.669 kb on + strand at 925.669 kb on + strand at 925.670 kb on - strand at 925.670 kb on - strand at 925.670 kb on - strand at 925.734 kb on + strand at 925.734 kb on + strand at 925.734 kb on + strand at 925.734 kb on + strand at 925.734 kb on + strand at 925.734 kb on + strand at 925.734 kb on + strand at 925.735 kb on - strand at 925.735 kb on - strand at 925.829 kb on - strand at 925.855 kb on + strand at 925.856 kb on - strand at 925.856 kb on - strand at 926.001 kb on + strand at 926.001 kb on + strand at 926.001 kb on + strand at 926.001 kb on + strand at 926.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 922,847 - RR42_RS04175 0.46 -1.0 922,847 - RR42_RS04175 0.46 -0.0 922,857 + RR42_RS04175 0.48 +0.7 922,991 - RR42_RS04175 0.78 -0.3 922,991 - RR42_RS04175 0.78 +3.1 923,105 - RR42_RS04180 0.11 -0.2 923,342 + RR42_RS04180 0.43 -1.3 923,741 + +0.0 923,741 + -0.1 923,772 - -0.6 923,772 - +0.5 924,152 + RR42_RS04185 0.26 +0.2 924,152 + RR42_RS04185 0.26 -0.1 924,153 - RR42_RS04185 0.26 -0.6 924,268 + RR42_RS04185 0.34 +0.2 924,269 - RR42_RS04185 0.34 -0.0 924,431 + RR42_RS04185 0.46 +1.6 924,431 + RR42_RS04185 0.46 -0.1 924,431 + RR42_RS04185 0.46 +0.0 924,633 + RR42_RS04185 0.61 +0.3 924,633 + RR42_RS04185 0.61 -0.8 924,677 + RR42_RS04185 0.64 +0.4 924,678 - RR42_RS04185 0.64 -0.6 924,699 + RR42_RS04185 0.66 +0.7 924,842 + RR42_RS04185 0.76 +0.7 924,842 + RR42_RS04185 0.76 -0.2 924,842 + RR42_RS04185 0.76 +0.4 924,843 - RR42_RS04185 0.76 +0.1 924,860 - RR42_RS04185 0.77 +1.2 924,860 - RR42_RS04185 0.77 -1.3 924,863 - RR42_RS04185 0.77 +0.1 924,945 - RR42_RS04185 0.83 +0.2 925,005 + RR42_RS04185 0.88 -0.1 925,005 + RR42_RS04185 0.88 -0.6 925,005 + RR42_RS04185 0.88 -0.0 925,005 + RR42_RS04185 0.88 -0.1 925,005 + RR42_RS04185 0.88 -0.5 925,006 - RR42_RS04185 0.88 +0.5 925,006 - RR42_RS04185 0.88 -0.6 925,006 - RR42_RS04185 0.88 -1.1 925,007 + RR42_RS04185 0.88 +0.0 925,163 - -0.1 925,172 + -0.4 925,172 + -0.4 925,172 + +0.6 925,173 - -0.1 925,174 + +0.6 925,174 + +1.5 925,174 + -1.3 925,174 + +0.1 925,175 - -1.1 925,210 - -1.9 925,210 - +1.2 925,367 + +0.2 925,367 + +0.1 925,621 + -0.3 925,621 + +0.6 925,622 - -0.3 925,622 - -0.2 925,622 - -0.1 925,669 + +0.9 925,669 + -0.1 925,669 + -0.3 925,670 - +0.1 925,670 - -0.6 925,670 - +0.2 925,734 + +0.7 925,734 + +0.6 925,734 + +0.3 925,734 + +1.6 925,734 + +0.1 925,734 + -0.1 925,734 + -2.5 925,735 - -2.3 925,735 - +1.0 925,829 - +0.6 925,855 + +0.4 925,856 - +0.1 925,856 - +0.4 926,001 + -1.0 926,001 + +0.4 926,001 + -0.7 926,001 + -2.5 926,002 - +0.2
Or see this region's nucleotide sequence