Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04180

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS04170 and RR42_RS04175 are separated by 20 nucleotidesRR42_RS04175 and RR42_RS04180 overlap by 64 nucleotidesRR42_RS04180 and RR42_RS04185 are separated by 38 nucleotides RR42_RS04170: RR42_RS04170 - bactoprenol glucosyl transferase, at 921,597 to 922,622 _RS04170 RR42_RS04175: RR42_RS04175 - hypothetical protein, at 922,643 to 923,086 _RS04175 RR42_RS04180: RR42_RS04180 - methyltransferase, at 923,023 to 923,757 _RS04180 RR42_RS04185: RR42_RS04185 - Fis family transcriptional regulator, at 923,796 to 925,172 _RS04185 Position (kb) 923 924Strain fitness (log2 ratio) -2 -1 0 1 2 3at 922.029 kb on + strand, within RR42_RS04170at 922.029 kb on + strand, within RR42_RS04170at 922.029 kb on + strand, within RR42_RS04170at 922.029 kb on + strand, within RR42_RS04170at 922.033 kb on - strand, within RR42_RS04170at 922.043 kb on + strand, within RR42_RS04170at 922.043 kb on + strand, within RR42_RS04170at 922.047 kb on + strand, within RR42_RS04170at 922.048 kb on - strand, within RR42_RS04170at 922.198 kb on - strand, within RR42_RS04170at 922.215 kb on - strand, within RR42_RS04170at 922.303 kb on + strand, within RR42_RS04170at 922.311 kb on + strand, within RR42_RS04170at 922.311 kb on + strand, within RR42_RS04170at 922.312 kb on - strand, within RR42_RS04170at 922.312 kb on - strand, within RR42_RS04170at 922.362 kb on - strand, within RR42_RS04170at 922.474 kb on - strand, within RR42_RS04170at 922.491 kb on + strand, within RR42_RS04170at 922.515 kb on + strand, within RR42_RS04170at 922.516 kb on - strand, within RR42_RS04170at 922.644 kb on + strandat 922.722 kb on + strand, within RR42_RS04175at 922.723 kb on - strand, within RR42_RS04175at 922.723 kb on - strand, within RR42_RS04175at 922.723 kb on - strand, within RR42_RS04175at 922.847 kb on - strand, within RR42_RS04175at 922.847 kb on - strand, within RR42_RS04175at 922.857 kb on + strand, within RR42_RS04175at 922.991 kb on - strand, within RR42_RS04175at 922.991 kb on - strand, within RR42_RS04175at 923.105 kb on - strand, within RR42_RS04180at 923.342 kb on + strand, within RR42_RS04180at 923.741 kb on + strandat 923.741 kb on + strandat 923.772 kb on - strandat 923.772 kb on - strandat 924.152 kb on + strand, within RR42_RS04185at 924.152 kb on + strand, within RR42_RS04185at 924.153 kb on - strand, within RR42_RS04185at 924.268 kb on + strand, within RR42_RS04185at 924.269 kb on - strand, within RR42_RS04185at 924.431 kb on + strand, within RR42_RS04185at 924.431 kb on + strand, within RR42_RS04185at 924.431 kb on + strand, within RR42_RS04185at 924.633 kb on + strand, within RR42_RS04185at 924.633 kb on + strand, within RR42_RS04185at 924.677 kb on + strand, within RR42_RS04185at 924.678 kb on - strand, within RR42_RS04185at 924.699 kb on + strand, within RR42_RS04185

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
922,029 + RR42_RS04170 0.42 -1.7
922,029 + RR42_RS04170 0.42 -2.1
922,029 + RR42_RS04170 0.42 +0.8
922,029 + RR42_RS04170 0.42 -2.2
922,033 - RR42_RS04170 0.42 -1.2
922,043 + RR42_RS04170 0.43 -0.3
922,043 + RR42_RS04170 0.43 -1.9
922,047 + RR42_RS04170 0.44 +1.3
922,048 - RR42_RS04170 0.44 -1.4
922,198 - RR42_RS04170 0.59 +0.5
922,215 - RR42_RS04170 0.60 -1.4
922,303 + RR42_RS04170 0.69 -1.4
922,311 + RR42_RS04170 0.70 +1.2
922,311 + RR42_RS04170 0.70 +1.1
922,312 - RR42_RS04170 0.70 +0.6
922,312 - RR42_RS04170 0.70 -1.2
922,362 - RR42_RS04170 0.75 +0.1
922,474 - RR42_RS04170 0.85 +0.3
922,491 + RR42_RS04170 0.87 -0.1
922,515 + RR42_RS04170 0.89 -1.1
922,516 - RR42_RS04170 0.90 +0.9
922,644 + -0.9
922,722 + RR42_RS04175 0.18 +0.6
922,723 - RR42_RS04175 0.18 -1.4
922,723 - RR42_RS04175 0.18 +0.2
922,723 - RR42_RS04175 0.18 -0.7
922,847 - RR42_RS04175 0.46 -1.0
922,847 - RR42_RS04175 0.46 -0.0
922,857 + RR42_RS04175 0.48 +0.7
922,991 - RR42_RS04175 0.78 -0.3
922,991 - RR42_RS04175 0.78 +3.1
923,105 - RR42_RS04180 0.11 -0.2
923,342 + RR42_RS04180 0.43 -1.3
923,741 + +0.0
923,741 + -0.1
923,772 - -0.6
923,772 - +0.5
924,152 + RR42_RS04185 0.26 +0.2
924,152 + RR42_RS04185 0.26 -0.1
924,153 - RR42_RS04185 0.26 -0.6
924,268 + RR42_RS04185 0.34 +0.2
924,269 - RR42_RS04185 0.34 -0.0
924,431 + RR42_RS04185 0.46 +1.6
924,431 + RR42_RS04185 0.46 -0.1
924,431 + RR42_RS04185 0.46 +0.0
924,633 + RR42_RS04185 0.61 +0.3
924,633 + RR42_RS04185 0.61 -0.8
924,677 + RR42_RS04185 0.64 +0.4
924,678 - RR42_RS04185 0.64 -0.6
924,699 + RR42_RS04185 0.66 +0.7

Or see this region's nucleotide sequence