Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04170 and RR42_RS04175 are separated by 20 nucleotides RR42_RS04175 and RR42_RS04180 overlap by 64 nucleotides RR42_RS04180 and RR42_RS04185 are separated by 38 nucleotides
RR42_RS04170: RR42_RS04170 - bactoprenol glucosyl transferase, at 921,597 to 922,622
_RS04170
RR42_RS04175: RR42_RS04175 - hypothetical protein, at 922,643 to 923,086
_RS04175
RR42_RS04180: RR42_RS04180 - methyltransferase, at 923,023 to 923,757
_RS04180
RR42_RS04185: RR42_RS04185 - Fis family transcriptional regulator, at 923,796 to 925,172
_RS04185
Position (kb)
923
924 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 922.029 kb on + strand, within RR42_RS04170 at 922.029 kb on + strand, within RR42_RS04170 at 922.029 kb on + strand, within RR42_RS04170 at 922.029 kb on + strand, within RR42_RS04170 at 922.033 kb on - strand, within RR42_RS04170 at 922.043 kb on + strand, within RR42_RS04170 at 922.043 kb on + strand, within RR42_RS04170 at 922.047 kb on + strand, within RR42_RS04170 at 922.048 kb on - strand, within RR42_RS04170 at 922.198 kb on - strand, within RR42_RS04170 at 922.215 kb on - strand, within RR42_RS04170 at 922.303 kb on + strand, within RR42_RS04170 at 922.311 kb on + strand, within RR42_RS04170 at 922.311 kb on + strand, within RR42_RS04170 at 922.312 kb on - strand, within RR42_RS04170 at 922.312 kb on - strand, within RR42_RS04170 at 922.362 kb on - strand, within RR42_RS04170 at 922.474 kb on - strand, within RR42_RS04170 at 922.491 kb on + strand, within RR42_RS04170 at 922.515 kb on + strand, within RR42_RS04170 at 922.516 kb on - strand, within RR42_RS04170 at 922.644 kb on + strand at 922.722 kb on + strand, within RR42_RS04175 at 922.723 kb on - strand, within RR42_RS04175 at 922.723 kb on - strand, within RR42_RS04175 at 922.723 kb on - strand, within RR42_RS04175 at 922.847 kb on - strand, within RR42_RS04175 at 922.847 kb on - strand, within RR42_RS04175 at 922.857 kb on + strand, within RR42_RS04175 at 922.991 kb on - strand, within RR42_RS04175 at 922.991 kb on - strand, within RR42_RS04175 at 923.105 kb on - strand, within RR42_RS04180 at 923.342 kb on + strand, within RR42_RS04180 at 923.741 kb on + strand at 923.741 kb on + strand at 923.772 kb on - strand at 923.772 kb on - strand at 924.152 kb on + strand, within RR42_RS04185 at 924.152 kb on + strand, within RR42_RS04185 at 924.153 kb on - strand, within RR42_RS04185 at 924.268 kb on + strand, within RR42_RS04185 at 924.269 kb on - strand, within RR42_RS04185 at 924.431 kb on + strand, within RR42_RS04185 at 924.431 kb on + strand, within RR42_RS04185 at 924.431 kb on + strand, within RR42_RS04185 at 924.633 kb on + strand, within RR42_RS04185 at 924.633 kb on + strand, within RR42_RS04185 at 924.677 kb on + strand, within RR42_RS04185 at 924.678 kb on - strand, within RR42_RS04185 at 924.699 kb on + strand, within RR42_RS04185
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 922,029 + RR42_RS04170 0.42 -1.7 922,029 + RR42_RS04170 0.42 -2.1 922,029 + RR42_RS04170 0.42 +0.8 922,029 + RR42_RS04170 0.42 -2.2 922,033 - RR42_RS04170 0.42 -1.2 922,043 + RR42_RS04170 0.43 -0.3 922,043 + RR42_RS04170 0.43 -1.9 922,047 + RR42_RS04170 0.44 +1.3 922,048 - RR42_RS04170 0.44 -1.4 922,198 - RR42_RS04170 0.59 +0.5 922,215 - RR42_RS04170 0.60 -1.4 922,303 + RR42_RS04170 0.69 -1.4 922,311 + RR42_RS04170 0.70 +1.2 922,311 + RR42_RS04170 0.70 +1.1 922,312 - RR42_RS04170 0.70 +0.6 922,312 - RR42_RS04170 0.70 -1.2 922,362 - RR42_RS04170 0.75 +0.1 922,474 - RR42_RS04170 0.85 +0.3 922,491 + RR42_RS04170 0.87 -0.1 922,515 + RR42_RS04170 0.89 -1.1 922,516 - RR42_RS04170 0.90 +0.9 922,644 + -0.9 922,722 + RR42_RS04175 0.18 +0.6 922,723 - RR42_RS04175 0.18 -1.4 922,723 - RR42_RS04175 0.18 +0.2 922,723 - RR42_RS04175 0.18 -0.7 922,847 - RR42_RS04175 0.46 -1.0 922,847 - RR42_RS04175 0.46 -0.0 922,857 + RR42_RS04175 0.48 +0.7 922,991 - RR42_RS04175 0.78 -0.3 922,991 - RR42_RS04175 0.78 +3.1 923,105 - RR42_RS04180 0.11 -0.2 923,342 + RR42_RS04180 0.43 -1.3 923,741 + +0.0 923,741 + -0.1 923,772 - -0.6 923,772 - +0.5 924,152 + RR42_RS04185 0.26 +0.2 924,152 + RR42_RS04185 0.26 -0.1 924,153 - RR42_RS04185 0.26 -0.6 924,268 + RR42_RS04185 0.34 +0.2 924,269 - RR42_RS04185 0.34 -0.0 924,431 + RR42_RS04185 0.46 +1.6 924,431 + RR42_RS04185 0.46 -0.1 924,431 + RR42_RS04185 0.46 +0.0 924,633 + RR42_RS04185 0.61 +0.3 924,633 + RR42_RS04185 0.61 -0.8 924,677 + RR42_RS04185 0.64 +0.4 924,678 - RR42_RS04185 0.64 -0.6 924,699 + RR42_RS04185 0.66 +0.7
Or see this region's nucleotide sequence