Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03540 and RR42_RS03545 are separated by 8 nucleotides RR42_RS03545 and RR42_RS03550 overlap by 4 nucleotides
RR42_RS03540: RR42_RS03540 - type VI secretion protein ImpA, at 785,350 to 787,818
_RS03540
RR42_RS03545: RR42_RS03545 - hypothetical protein, at 787,827 to 788,687
_RS03545
RR42_RS03550: RR42_RS03550 - hypothetical protein, at 788,684 to 791,272
_RS03550
Position (kb) 787
788
789 Strain fitness (log2 ratio) -1
0
1
2 at 786.920 kb on + strand, within RR42_RS03540 at 786.920 kb on + strand, within RR42_RS03540 at 786.921 kb on - strand, within RR42_RS03540 at 786.921 kb on - strand, within RR42_RS03540 at 786.970 kb on + strand, within RR42_RS03540 at 787.047 kb on + strand, within RR42_RS03540 at 787.047 kb on + strand, within RR42_RS03540 at 787.048 kb on - strand, within RR42_RS03540 at 787.095 kb on + strand, within RR42_RS03540 at 787.095 kb on + strand, within RR42_RS03540 at 787.345 kb on - strand, within RR42_RS03540 at 787.365 kb on + strand, within RR42_RS03540 at 787.410 kb on + strand, within RR42_RS03540 at 787.630 kb on - strand at 787.677 kb on + strand at 787.678 kb on - strand at 787.698 kb on + strand at 787.789 kb on - strand at 787.972 kb on + strand, within RR42_RS03545 at 787.973 kb on - strand, within RR42_RS03545 at 788.024 kb on + strand, within RR42_RS03545 at 788.025 kb on - strand, within RR42_RS03545 at 788.029 kb on - strand, within RR42_RS03545 at 788.164 kb on - strand, within RR42_RS03545 at 788.166 kb on + strand, within RR42_RS03545 at 788.254 kb on - strand, within RR42_RS03545 at 788.726 kb on + strand at 788.829 kb on - strand at 788.855 kb on + strand at 788.855 kb on + strand at 788.861 kb on + strand at 788.903 kb on + strand at 788.904 kb on - strand at 788.904 kb on - strand at 788.905 kb on + strand at 788.906 kb on - strand at 788.924 kb on + strand at 788.924 kb on + strand at 788.925 kb on - strand at 788.925 kb on - strand at 788.930 kb on + strand at 789.300 kb on - strand, within RR42_RS03550 at 789.423 kb on - strand, within RR42_RS03550 at 789.612 kb on - strand, within RR42_RS03550 at 789.612 kb on - strand, within RR42_RS03550
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 786,920 + RR42_RS03540 0.64 +0.5 786,920 + RR42_RS03540 0.64 +0.7 786,921 - RR42_RS03540 0.64 -0.4 786,921 - RR42_RS03540 0.64 +1.4 786,970 + RR42_RS03540 0.66 +0.1 787,047 + RR42_RS03540 0.69 -0.9 787,047 + RR42_RS03540 0.69 -1.2 787,048 - RR42_RS03540 0.69 -1.2 787,095 + RR42_RS03540 0.71 +2.4 787,095 + RR42_RS03540 0.71 +0.5 787,345 - RR42_RS03540 0.81 +0.9 787,365 + RR42_RS03540 0.82 -0.3 787,410 + RR42_RS03540 0.83 +0.7 787,630 - -0.1 787,677 + -0.4 787,678 - +1.4 787,698 + +0.1 787,789 - +0.0 787,972 + RR42_RS03545 0.17 -0.1 787,973 - RR42_RS03545 0.17 +0.9 788,024 + RR42_RS03545 0.23 +1.4 788,025 - RR42_RS03545 0.23 +0.8 788,029 - RR42_RS03545 0.23 +0.1 788,164 - RR42_RS03545 0.39 -0.2 788,166 + RR42_RS03545 0.39 +1.5 788,254 - RR42_RS03545 0.50 +1.4 788,726 + +1.7 788,829 - -0.1 788,855 + -0.2 788,855 + +0.1 788,861 + +0.6 788,903 + +1.4 788,904 - -0.6 788,904 - -0.2 788,905 + -0.1 788,906 - -0.1 788,924 + +0.2 788,924 + -1.6 788,925 - -0.0 788,925 - +0.7 788,930 + +0.2 789,300 - RR42_RS03550 0.24 -0.2 789,423 - RR42_RS03550 0.29 -1.2 789,612 - RR42_RS03550 0.36 -1.6 789,612 - RR42_RS03550 0.36 +0.4
Or see this region's nucleotide sequence