Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02150

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02145 and RR42_RS02150 are separated by 393 nucleotidesRR42_RS02150 and RR42_RS02155 are separated by 197 nucleotidesRR42_RS02155 and RR42_RS02160 are separated by 128 nucleotides RR42_RS02145: RR42_RS02145 - excinuclease ABC subunit A, at 474,837 to 477,701 _RS02145 RR42_RS02150: RR42_RS02150 - membrane protein, at 478,095 to 479,351 _RS02150 RR42_RS02155: RR42_RS02155 - single-stranded DNA-binding protein, at 479,549 to 480,103 _RS02155 RR42_RS02160: RR42_RS02160 - LacI family transcriptional regulator, at 480,232 to 481,215 _RS02160 Position (kb) 478 479 480Strain fitness (log2 ratio) -2 -1 0 1at 477.121 kb on + strand, within RR42_RS02145at 477.121 kb on + strand, within RR42_RS02145at 477.121 kb on + strand, within RR42_RS02145at 477.346 kb on + strand, within RR42_RS02145at 477.382 kb on + strand, within RR42_RS02145at 477.383 kb on - strand, within RR42_RS02145at 477.524 kb on - strandat 477.545 kb on - strandat 477.545 kb on - strandat 477.701 kb on + strandat 477.701 kb on + strandat 477.701 kb on + strandat 477.701 kb on + strandat 477.701 kb on + strandat 477.702 kb on - strandat 477.702 kb on - strandat 477.702 kb on - strandat 477.702 kb on - strandat 477.703 kb on + strandat 477.703 kb on + strandat 477.703 kb on + strandat 477.703 kb on + strandat 477.704 kb on - strandat 477.704 kb on - strandat 477.901 kb on + strandat 477.902 kb on - strandat 477.902 kb on - strandat 477.904 kb on + strandat 477.904 kb on + strandat 477.905 kb on - strandat 477.942 kb on + strandat 478.109 kb on + strandat 478.109 kb on + strandat 478.109 kb on + strandat 478.109 kb on + strandat 478.109 kb on + strandat 478.109 kb on + strandat 478.110 kb on - strandat 478.110 kb on - strandat 478.903 kb on - strand, within RR42_RS02150at 478.903 kb on - strand, within RR42_RS02150at 479.167 kb on - strand, within RR42_RS02150at 479.167 kb on - strand, within RR42_RS02150at 479.285 kb on + strandat 479.285 kb on + strandat 479.287 kb on + strandat 479.417 kb on + strandat 479.421 kb on + strandat 479.421 kb on + strandat 479.468 kb on + strandat 480.321 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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477,121 + RR42_RS02145 0.80 +0.1
477,121 + RR42_RS02145 0.80 +0.0
477,121 + RR42_RS02145 0.80 +0.1
477,346 + RR42_RS02145 0.88 +1.2
477,382 + RR42_RS02145 0.89 +1.4
477,383 - RR42_RS02145 0.89 +0.6
477,524 - +1.2
477,545 - -0.1
477,545 - -0.1
477,701 + -0.3
477,701 + -0.1
477,701 + -0.2
477,701 + +0.3
477,701 + +0.0
477,702 - +0.3
477,702 - +0.3
477,702 - +0.9
477,702 - +1.1
477,703 + +0.0
477,703 + +0.2
477,703 + +0.4
477,703 + -0.6
477,704 - +0.1
477,704 - -1.0
477,901 + +1.4
477,902 - -0.1
477,902 - +0.2
477,904 + -2.5
477,904 + -1.2
477,905 - -0.4
477,942 + -0.6
478,109 + -1.0
478,109 + +1.4
478,109 + +0.2
478,109 + +1.2
478,109 + -1.9
478,109 + +1.1
478,110 - -0.0
478,110 - -0.0
478,903 - RR42_RS02150 0.64 +0.4
478,903 - RR42_RS02150 0.64 -1.6
479,167 - RR42_RS02150 0.85 -1.1
479,167 - RR42_RS02150 0.85 -0.9
479,285 + -1.0
479,285 + -0.9
479,287 + -0.8
479,417 + -0.9
479,421 + -0.3
479,421 + +1.0
479,468 + -0.6
480,321 + -0.1

Or see this region's nucleotide sequence