Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01845

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01835 and RR42_RS01840 are separated by 164 nucleotidesRR42_RS01840 and RR42_RS01845 are separated by 117 nucleotidesRR42_RS01845 and RR42_RS01850 are separated by 7 nucleotides RR42_RS01835: RR42_RS01835 - glutaredoxin, at 416,293 to 416,550 _RS01835 RR42_RS01840: RR42_RS01840 - preprotein translocase subunit SecB, at 416,715 to 417,233 _RS01840 RR42_RS01845: RR42_RS01845 - glycerol-3-phosphate dehydrogenase, at 417,351 to 418,367 _RS01845 RR42_RS01850: RR42_RS01850 - ABC transporter substrate-binding protein, at 418,375 to 419,367 _RS01850 Position (kb) 417 418 419Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 416.464 kb on + strand, within RR42_RS01835at 416.464 kb on + strand, within RR42_RS01835at 416.596 kb on + strandat 416.596 kb on + strandat 416.596 kb on + strandat 416.597 kb on - strandat 416.597 kb on - strandat 416.597 kb on - strandat 416.597 kb on - strandat 416.601 kb on + strandat 416.601 kb on + strandat 416.601 kb on + strandat 416.601 kb on + strandat 416.601 kb on + strandat 416.601 kb on + strandat 416.601 kb on + strandat 416.603 kb on + strandat 417.316 kb on - strandat 417.762 kb on + strand, within RR42_RS01845at 417.762 kb on + strand, within RR42_RS01845at 418.288 kb on + strandat 418.655 kb on - strand, within RR42_RS01850at 418.656 kb on + strand, within RR42_RS01850at 418.656 kb on + strand, within RR42_RS01850at 418.656 kb on + strand, within RR42_RS01850at 418.656 kb on + strand, within RR42_RS01850at 418.656 kb on + strand, within RR42_RS01850at 418.656 kb on + strand, within RR42_RS01850at 418.657 kb on - strand, within RR42_RS01850at 418.657 kb on - strand, within RR42_RS01850at 418.657 kb on - strand, within RR42_RS01850at 418.657 kb on - strand, within RR42_RS01850at 418.657 kb on - strand, within RR42_RS01850at 418.657 kb on - strand, within RR42_RS01850at 418.657 kb on - strand, within RR42_RS01850at 418.657 kb on - strand, within RR42_RS01850at 418.859 kb on - strand, within RR42_RS01850at 418.859 kb on - strand, within RR42_RS01850at 418.859 kb on - strand, within RR42_RS01850at 418.859 kb on - strand, within RR42_RS01850at 419.260 kb on + strand, within RR42_RS01850at 419.260 kb on + strand, within RR42_RS01850at 419.261 kb on - strand, within RR42_RS01850at 419.261 kb on - strand, within RR42_RS01850at 419.261 kb on - strand, within RR42_RS01850at 419.366 kb on - strandat 419.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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416,464 + RR42_RS01835 0.66 +0.8
416,464 + RR42_RS01835 0.66 +0.2
416,596 + -0.4
416,596 + -1.3
416,596 + -0.0
416,597 - -0.7
416,597 - -0.7
416,597 - -0.1
416,597 - -1.9
416,601 + +0.5
416,601 + -1.4
416,601 + -0.8
416,601 + -0.4
416,601 + +0.4
416,601 + -0.7
416,601 + +0.1
416,603 + -0.1
417,316 - -2.0
417,762 + RR42_RS01845 0.40 -2.7
417,762 + RR42_RS01845 0.40 -3.3
418,288 + -1.1
418,655 - RR42_RS01850 0.28 -0.1
418,656 + RR42_RS01850 0.28 +0.7
418,656 + RR42_RS01850 0.28 -1.7
418,656 + RR42_RS01850 0.28 -1.9
418,656 + RR42_RS01850 0.28 +2.0
418,656 + RR42_RS01850 0.28 -0.5
418,656 + RR42_RS01850 0.28 -1.0
418,657 - RR42_RS01850 0.28 +0.1
418,657 - RR42_RS01850 0.28 +1.4
418,657 - RR42_RS01850 0.28 +0.2
418,657 - RR42_RS01850 0.28 -2.5
418,657 - RR42_RS01850 0.28 +0.3
418,657 - RR42_RS01850 0.28 -0.7
418,657 - RR42_RS01850 0.28 -0.1
418,657 - RR42_RS01850 0.28 -0.1
418,859 - RR42_RS01850 0.49 -0.4
418,859 - RR42_RS01850 0.49 -0.8
418,859 - RR42_RS01850 0.49 -0.7
418,859 - RR42_RS01850 0.49 -1.3
419,260 + RR42_RS01850 0.89 -0.0
419,260 + RR42_RS01850 0.89 -0.4
419,261 - RR42_RS01850 0.89 -0.3
419,261 - RR42_RS01850 0.89 +1.2
419,261 - RR42_RS01850 0.89 -1.4
419,366 - +1.1
419,366 - +1.0

Or see this region's nucleotide sequence