Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01795

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01780 and RR42_RS01785 are separated by 52 nucleotidesRR42_RS01785 and RR42_RS01790 overlap by 32 nucleotidesRR42_RS01790 and RR42_RS01795 are separated by 139 nucleotidesRR42_RS01795 and RR42_RS01800 are separated by 643 nucleotides RR42_RS01780: RR42_RS01780 - glutathione synthetase, at 405,076 to 406,029 _RS01780 RR42_RS01785: RR42_RS01785 - PTS fructose transporter subunit IIA, at 406,082 to 406,537 _RS01785 RR42_RS01790: RR42_RS01790 - phosphocarrier protein HPr, at 406,506 to 406,775 _RS01790 RR42_RS01795: RR42_RS01795 - phosphoenolpyruvate-protein phosphotransferase, at 406,915 to 408,690 _RS01795 RR42_RS01800: RR42_RS01800 - bacterioferritin, at 409,334 to 409,813 _RS01800 Position (kb) 406 407 408 409Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 406.010 kb on + strandat 406.011 kb on - strandat 406.050 kb on + strandat 406.051 kb on - strandat 406.051 kb on - strandat 406.051 kb on - strandat 406.459 kb on - strand, within RR42_RS01785at 406.459 kb on - strand, within RR42_RS01785at 406.459 kb on - strand, within RR42_RS01785at 406.459 kb on - strand, within RR42_RS01785at 406.505 kb on + strandat 406.505 kb on + strandat 406.505 kb on + strandat 406.505 kb on + strandat 406.505 kb on + strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.528 kb on + strandat 406.528 kb on + strandat 406.528 kb on + strandat 406.528 kb on + strandat 406.528 kb on + strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.535 kb on + strandat 406.535 kb on + strandat 406.535 kb on + strandat 406.536 kb on - strandat 406.536 kb on - strandat 406.773 kb on + strandat 406.773 kb on + strandat 406.774 kb on - strandat 406.774 kb on - strandat 406.774 kb on - strandat 406.786 kb on - strandat 406.912 kb on + strandat 406.913 kb on - strandat 406.913 kb on - strandat 406.913 kb on - strandat 406.913 kb on - strandat 406.913 kb on - strandat 406.913 kb on - strandat 406.913 kb on - strandat 406.913 kb on - strandat 407.008 kb on + strandat 407.008 kb on + strandat 407.008 kb on + strandat 407.008 kb on + strandat 407.009 kb on - strandat 407.009 kb on - strandat 407.009 kb on - strandat 407.089 kb on - strandat 407.089 kb on - strandat 407.215 kb on + strand, within RR42_RS01795at 407.215 kb on + strand, within RR42_RS01795at 407.215 kb on + strand, within RR42_RS01795at 407.216 kb on - strand, within RR42_RS01795at 407.287 kb on + strand, within RR42_RS01795at 407.287 kb on + strand, within RR42_RS01795at 407.288 kb on - strand, within RR42_RS01795at 407.288 kb on - strand, within RR42_RS01795at 407.288 kb on - strand, within RR42_RS01795at 407.288 kb on - strand, within RR42_RS01795at 407.288 kb on - strand, within RR42_RS01795at 407.288 kb on - strand, within RR42_RS01795at 407.288 kb on - strand, within RR42_RS01795at 407.360 kb on + strand, within RR42_RS01795at 407.360 kb on + strand, within RR42_RS01795at 407.523 kb on + strand, within RR42_RS01795at 407.672 kb on - strand, within RR42_RS01795at 407.672 kb on - strand, within RR42_RS01795at 407.672 kb on - strand, within RR42_RS01795at 407.672 kb on - strand, within RR42_RS01795at 407.730 kb on + strand, within RR42_RS01795at 407.730 kb on + strand, within RR42_RS01795at 407.731 kb on - strand, within RR42_RS01795at 407.855 kb on + strand, within RR42_RS01795at 407.855 kb on + strand, within RR42_RS01795at 407.855 kb on + strand, within RR42_RS01795at 407.855 kb on + strand, within RR42_RS01795at 407.856 kb on - strand, within RR42_RS01795at 407.856 kb on - strand, within RR42_RS01795at 407.856 kb on - strand, within RR42_RS01795at 407.908 kb on + strand, within RR42_RS01795at 408.358 kb on + strand, within RR42_RS01795at 408.358 kb on + strand, within RR42_RS01795at 408.359 kb on - strand, within RR42_RS01795at 408.359 kb on - strand, within RR42_RS01795at 408.359 kb on - strand, within RR42_RS01795at 408.403 kb on + strand, within RR42_RS01795at 408.403 kb on + strand, within RR42_RS01795at 408.404 kb on - strand, within RR42_RS01795at 408.404 kb on - strand, within RR42_RS01795at 408.649 kb on + strandat 408.649 kb on + strandat 408.649 kb on + strandat 408.649 kb on + strandat 408.649 kb on + strandat 408.650 kb on - strandat 408.650 kb on - strandat 408.650 kb on - strandat 408.716 kb on - strandat 408.735 kb on + strandat 408.735 kb on + strandat 408.735 kb on + strandat 408.736 kb on - strandat 408.739 kb on + strandat 408.799 kb on - strandat 408.820 kb on + strandat 408.820 kb on + strandat 408.821 kb on - strandat 408.821 kb on - strandat 408.876 kb on + strandat 408.876 kb on + strandat 408.876 kb on + strandat 408.876 kb on + strandat 408.876 kb on + strandat 408.877 kb on - strandat 408.928 kb on + strandat 408.929 kb on - strandat 408.983 kb on + strandat 408.983 kb on + strandat 408.984 kb on - strandat 408.984 kb on - strandat 409.019 kb on + strandat 409.019 kb on + strandat 409.406 kb on + strand, within RR42_RS01800at 409.407 kb on - strand, within RR42_RS01800at 409.407 kb on - strand, within RR42_RS01800at 409.407 kb on - strand, within RR42_RS01800at 409.427 kb on + strand, within RR42_RS01800at 409.428 kb on - strand, within RR42_RS01800at 409.428 kb on - strand, within RR42_RS01800at 409.466 kb on + strand, within RR42_RS01800at 409.466 kb on + strand, within RR42_RS01800at 409.466 kb on + strand, within RR42_RS01800at 409.467 kb on - strand, within RR42_RS01800at 409.467 kb on - strand, within RR42_RS01800at 409.467 kb on - strand, within RR42_RS01800at 409.648 kb on + strand, within RR42_RS01800at 409.649 kb on - strand, within RR42_RS01800at 409.649 kb on - strand, within RR42_RS01800at 409.649 kb on - strand, within RR42_RS01800at 409.649 kb on - strand, within RR42_RS01800at 409.652 kb on + strand, within RR42_RS01800at 409.653 kb on - strand, within RR42_RS01800at 409.653 kb on - strand, within RR42_RS01800at 409.653 kb on - strand, within RR42_RS01800at 409.674 kb on - strand, within RR42_RS01800

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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406,010 + -0.3
406,011 - +1.4
406,050 + -1.4
406,051 - -0.3
406,051 - +0.8
406,051 - -1.1
406,459 - RR42_RS01785 0.83 -1.4
406,459 - RR42_RS01785 0.83 -1.8
406,459 - RR42_RS01785 0.83 -0.0
406,459 - RR42_RS01785 0.83 +1.8
406,505 + -0.6
406,505 + -1.3
406,505 + +1.6
406,505 + +0.3
406,505 + -2.1
406,506 - -2.8
406,506 - -0.8
406,506 - -2.3
406,506 - -1.6
406,506 - -2.6
406,506 - -0.5
406,506 - -0.6
406,506 - -1.3
406,506 - -1.1
406,506 - -0.3
406,506 - -2.1
406,506 - -1.1
406,506 - -2.3
406,506 - -0.5
406,506 - -2.7
406,528 + -1.1
406,528 + -1.3
406,528 + -1.1
406,528 + -1.3
406,528 + -1.1
406,529 - -0.6
406,529 - -1.6
406,529 - -2.9
406,529 - +0.9
406,529 - -1.2
406,529 - -1.9
406,529 - -1.7
406,529 - -2.9
406,529 - -1.0
406,529 - -1.2
406,529 - -0.6
406,529 - -3.3
406,535 + -0.6
406,535 + -1.6
406,535 + -2.1
406,536 - -1.2
406,536 - -2.7
406,773 + +0.3
406,773 + +0.3
406,774 - -0.1
406,774 - -0.2
406,774 - -1.7
406,786 - -0.7
406,912 + +1.7
406,913 - -1.1
406,913 - -0.9
406,913 - -0.4
406,913 - +2.0
406,913 - -0.3
406,913 - -2.6
406,913 - -2.7
406,913 - -1.4
407,008 + -1.4
407,008 + -2.1
407,008 + -2.4
407,008 + -1.4
407,009 - -1.9
407,009 - -1.7
407,009 - +0.4
407,089 - -4.3
407,089 - -1.4
407,215 + RR42_RS01795 0.17 -2.4
407,215 + RR42_RS01795 0.17 -2.1
407,215 + RR42_RS01795 0.17 -2.6
407,216 - RR42_RS01795 0.17 -2.1
407,287 + RR42_RS01795 0.21 -0.6
407,287 + RR42_RS01795 0.21 -1.0
407,288 - RR42_RS01795 0.21 -2.5
407,288 - RR42_RS01795 0.21 -1.5
407,288 - RR42_RS01795 0.21 -1.1
407,288 - RR42_RS01795 0.21 -2.0
407,288 - RR42_RS01795 0.21 -3.6
407,288 - RR42_RS01795 0.21 -1.4
407,288 - RR42_RS01795 0.21 -3.3
407,360 + RR42_RS01795 0.25 -1.7
407,360 + RR42_RS01795 0.25 -1.7
407,523 + RR42_RS01795 0.34 -1.8
407,672 - RR42_RS01795 0.43 -0.1
407,672 - RR42_RS01795 0.43 -0.9
407,672 - RR42_RS01795 0.43 -3.8
407,672 - RR42_RS01795 0.43 -2.4
407,730 + RR42_RS01795 0.46 -2.6
407,730 + RR42_RS01795 0.46 -1.3
407,731 - RR42_RS01795 0.46 -2.0
407,855 + RR42_RS01795 0.53 -2.3
407,855 + RR42_RS01795 0.53 -1.8
407,855 + RR42_RS01795 0.53 -1.5
407,855 + RR42_RS01795 0.53 -1.4
407,856 - RR42_RS01795 0.53 -1.4
407,856 - RR42_RS01795 0.53 -2.4
407,856 - RR42_RS01795 0.53 -0.4
407,908 + RR42_RS01795 0.56 -2.3
408,358 + RR42_RS01795 0.81 -2.0
408,358 + RR42_RS01795 0.81 -0.6
408,359 - RR42_RS01795 0.81 -1.7
408,359 - RR42_RS01795 0.81 -3.0
408,359 - RR42_RS01795 0.81 -1.7
408,403 + RR42_RS01795 0.84 -3.9
408,403 + RR42_RS01795 0.84 -2.1
408,404 - RR42_RS01795 0.84 -1.9
408,404 - RR42_RS01795 0.84 +0.4
408,649 + -0.7
408,649 + -0.2
408,649 + -1.1
408,649 + -0.0
408,649 + +1.4
408,650 - -0.6
408,650 - +1.3
408,650 - -0.1
408,716 - +0.4
408,735 + -0.0
408,735 + -0.4
408,735 + -1.3
408,736 - -1.1
408,739 + +0.7
408,799 - +0.0
408,820 + +1.9
408,820 + +0.8
408,821 - +0.6
408,821 - +0.9
408,876 + +1.8
408,876 + +0.7
408,876 + -0.3
408,876 + +0.1
408,876 + -0.0
408,877 - +0.7
408,928 + -0.3
408,929 - -1.6
408,983 + +0.0
408,983 + +0.4
408,984 - -0.6
408,984 - -1.1
409,019 + +0.5
409,019 + -0.4
409,406 + RR42_RS01800 0.15 -0.5
409,407 - RR42_RS01800 0.15 -0.1
409,407 - RR42_RS01800 0.15 -3.0
409,407 - RR42_RS01800 0.15 -0.2
409,427 + RR42_RS01800 0.19 +2.8
409,428 - RR42_RS01800 0.20 +0.4
409,428 - RR42_RS01800 0.20 +0.5
409,466 + RR42_RS01800 0.28 -1.1
409,466 + RR42_RS01800 0.28 -1.6
409,466 + RR42_RS01800 0.28 -2.0
409,467 - RR42_RS01800 0.28 -0.8
409,467 - RR42_RS01800 0.28 +1.1
409,467 - RR42_RS01800 0.28 -0.2
409,648 + RR42_RS01800 0.65 -0.6
409,649 - RR42_RS01800 0.66 +0.0
409,649 - RR42_RS01800 0.66 -0.8
409,649 - RR42_RS01800 0.66 -0.4
409,649 - RR42_RS01800 0.66 +1.6
409,652 + RR42_RS01800 0.66 +0.3
409,653 - RR42_RS01800 0.66 +0.5
409,653 - RR42_RS01800 0.66 -0.4
409,653 - RR42_RS01800 0.66 +0.7
409,674 - RR42_RS01800 0.71 -1.6

Or see this region's nucleotide sequence