Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01780

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01775 and RR42_RS01780 are separated by 29 nucleotidesRR42_RS01780 and RR42_RS01785 are separated by 52 nucleotidesRR42_RS01785 and RR42_RS01790 overlap by 32 nucleotidesRR42_RS01790 and RR42_RS01795 are separated by 139 nucleotides RR42_RS01775: RR42_RS01775 - glutamate--cysteine ligase, at 403,751 to 405,046 _RS01775 RR42_RS01780: RR42_RS01780 - glutathione synthetase, at 405,076 to 406,029 _RS01780 RR42_RS01785: RR42_RS01785 - PTS fructose transporter subunit IIA, at 406,082 to 406,537 _RS01785 RR42_RS01790: RR42_RS01790 - phosphocarrier protein HPr, at 406,506 to 406,775 _RS01790 RR42_RS01795: RR42_RS01795 - phosphoenolpyruvate-protein phosphotransferase, at 406,915 to 408,690 _RS01795 Position (kb) 405 406 407Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 404.337 kb on - strand, within RR42_RS01775at 404.337 kb on - strand, within RR42_RS01775at 404.562 kb on - strand, within RR42_RS01775at 404.591 kb on + strand, within RR42_RS01775at 404.591 kb on + strand, within RR42_RS01775at 404.592 kb on - strand, within RR42_RS01775at 404.622 kb on - strand, within RR42_RS01775at 404.622 kb on - strand, within RR42_RS01775at 404.795 kb on + strand, within RR42_RS01775at 404.795 kb on + strand, within RR42_RS01775at 404.796 kb on - strand, within RR42_RS01775at 404.829 kb on - strand, within RR42_RS01775at 404.964 kb on - strandat 404.965 kb on + strandat 404.965 kb on + strandat 404.966 kb on - strandat 404.966 kb on - strandat 404.966 kb on - strandat 404.969 kb on + strandat 404.970 kb on - strandat 404.970 kb on - strandat 404.970 kb on - strandat 405.122 kb on - strandat 405.136 kb on + strandat 405.136 kb on + strandat 405.355 kb on + strand, within RR42_RS01780at 405.356 kb on - strand, within RR42_RS01780at 405.356 kb on - strand, within RR42_RS01780at 405.472 kb on + strand, within RR42_RS01780at 405.472 kb on + strand, within RR42_RS01780at 405.473 kb on - strand, within RR42_RS01780at 405.511 kb on - strand, within RR42_RS01780at 405.511 kb on - strand, within RR42_RS01780at 405.670 kb on + strand, within RR42_RS01780at 405.671 kb on - strand, within RR42_RS01780at 405.671 kb on - strand, within RR42_RS01780at 405.671 kb on - strand, within RR42_RS01780at 405.671 kb on - strand, within RR42_RS01780at 405.672 kb on + strand, within RR42_RS01780at 405.673 kb on - strand, within RR42_RS01780at 405.673 kb on - strand, within RR42_RS01780at 405.733 kb on + strand, within RR42_RS01780at 405.748 kb on - strand, within RR42_RS01780at 405.904 kb on + strand, within RR42_RS01780at 405.905 kb on - strand, within RR42_RS01780at 406.010 kb on + strandat 406.011 kb on - strandat 406.050 kb on + strandat 406.051 kb on - strandat 406.051 kb on - strandat 406.051 kb on - strandat 406.459 kb on - strand, within RR42_RS01785at 406.459 kb on - strand, within RR42_RS01785at 406.459 kb on - strand, within RR42_RS01785at 406.459 kb on - strand, within RR42_RS01785at 406.505 kb on + strandat 406.505 kb on + strandat 406.505 kb on + strandat 406.505 kb on + strandat 406.505 kb on + strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.506 kb on - strandat 406.528 kb on + strandat 406.528 kb on + strandat 406.528 kb on + strandat 406.528 kb on + strandat 406.528 kb on + strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.529 kb on - strandat 406.535 kb on + strandat 406.535 kb on + strandat 406.535 kb on + strandat 406.536 kb on - strandat 406.536 kb on - strandat 406.773 kb on + strandat 406.773 kb on + strandat 406.774 kb on - strandat 406.774 kb on - strandat 406.774 kb on - strandat 406.786 kb on - strandat 406.912 kb on + strandat 406.913 kb on - strandat 406.913 kb on - strandat 406.913 kb on - strandat 406.913 kb on - strandat 406.913 kb on - strandat 406.913 kb on - strandat 406.913 kb on - strandat 406.913 kb on - strandat 407.008 kb on + strandat 407.008 kb on + strandat 407.008 kb on + strandat 407.008 kb on + strandat 407.009 kb on - strandat 407.009 kb on - strandat 407.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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404,337 - RR42_RS01775 0.45 -1.4
404,337 - RR42_RS01775 0.45 -0.8
404,562 - RR42_RS01775 0.63 -1.5
404,591 + RR42_RS01775 0.65 -0.8
404,591 + RR42_RS01775 0.65 -1.1
404,592 - RR42_RS01775 0.65 -0.9
404,622 - RR42_RS01775 0.67 -2.2
404,622 - RR42_RS01775 0.67 -4.2
404,795 + RR42_RS01775 0.81 -1.1
404,795 + RR42_RS01775 0.81 -2.4
404,796 - RR42_RS01775 0.81 -0.8
404,829 - RR42_RS01775 0.83 -1.6
404,964 - -1.3
404,965 + -1.1
404,965 + -1.0
404,966 - -2.0
404,966 - -1.1
404,966 - +0.4
404,969 + -3.0
404,970 - -0.6
404,970 - -2.1
404,970 - +0.7
405,122 - -0.1
405,136 + -1.6
405,136 + -1.1
405,355 + RR42_RS01780 0.29 -1.4
405,356 - RR42_RS01780 0.29 -1.8
405,356 - RR42_RS01780 0.29 -2.4
405,472 + RR42_RS01780 0.42 -2.8
405,472 + RR42_RS01780 0.42 -2.6
405,473 - RR42_RS01780 0.42 -0.1
405,511 - RR42_RS01780 0.46 -1.6
405,511 - RR42_RS01780 0.46 -0.5
405,670 + RR42_RS01780 0.62 -2.1
405,671 - RR42_RS01780 0.62 -0.6
405,671 - RR42_RS01780 0.62 -0.8
405,671 - RR42_RS01780 0.62 -1.1
405,671 - RR42_RS01780 0.62 -0.9
405,672 + RR42_RS01780 0.62 -0.0
405,673 - RR42_RS01780 0.63 -0.8
405,673 - RR42_RS01780 0.63 -1.1
405,733 + RR42_RS01780 0.69 -2.3
405,748 - RR42_RS01780 0.70 -1.3
405,904 + RR42_RS01780 0.87 +0.1
405,905 - RR42_RS01780 0.87 -3.3
406,010 + -0.3
406,011 - +1.4
406,050 + -1.4
406,051 - -0.3
406,051 - +0.8
406,051 - -1.1
406,459 - RR42_RS01785 0.83 -1.4
406,459 - RR42_RS01785 0.83 -1.8
406,459 - RR42_RS01785 0.83 -0.0
406,459 - RR42_RS01785 0.83 +1.8
406,505 + -0.6
406,505 + -1.3
406,505 + +1.6
406,505 + +0.3
406,505 + -2.1
406,506 - -2.8
406,506 - -0.8
406,506 - -2.3
406,506 - -1.6
406,506 - -2.6
406,506 - -0.5
406,506 - -0.6
406,506 - -1.3
406,506 - -1.1
406,506 - -0.3
406,506 - -2.1
406,506 - -1.1
406,506 - -2.3
406,506 - -0.5
406,506 - -2.7
406,528 + -1.1
406,528 + -1.3
406,528 + -1.1
406,528 + -1.3
406,528 + -1.1
406,529 - -0.6
406,529 - -1.6
406,529 - -2.9
406,529 - +0.9
406,529 - -1.2
406,529 - -1.9
406,529 - -1.7
406,529 - -2.9
406,529 - -1.0
406,529 - -1.2
406,529 - -0.6
406,529 - -3.3
406,535 + -0.6
406,535 + -1.6
406,535 + -2.1
406,536 - -1.2
406,536 - -2.7
406,773 + +0.3
406,773 + +0.3
406,774 - -0.1
406,774 - -0.2
406,774 - -1.7
406,786 - -0.7
406,912 + +1.7
406,913 - -1.1
406,913 - -0.9
406,913 - -0.4
406,913 - +2.0
406,913 - -0.3
406,913 - -2.6
406,913 - -2.7
406,913 - -1.4
407,008 + -1.4
407,008 + -2.1
407,008 + -2.4
407,008 + -1.4
407,009 - -1.9
407,009 - -1.7
407,009 - +0.4

Or see this region's nucleotide sequence